Wall clock time and date at job start Mon Mar 30 2020 06:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38238 * 119.99149 * 2 1 4 4 C 1.38338 * 119.98208 * 179.79178 * 3 2 1 5 5 Cl 1.73602 * 120.00969 * 180.23118 * 4 3 2 6 6 C 1.38371 * 119.97268 * 0.50472 * 4 3 2 7 7 C 1.38196 * 119.98735 * 359.72890 * 6 4 3 8 8 C 1.50708 * 119.99049 * 179.97438 * 7 6 4 9 9 H 1.08999 * 110.27109 * 205.72052 * 8 7 6 10 10 C 1.54944 * 110.30795 * 83.62941 * 8 7 6 11 11 C 1.55304 * 100.94083 * 204.63764 * 10 8 7 12 12 C 1.54384 * 102.25171 * 34.13554 * 11 10 8 13 13 H 1.08998 * 109.83031 * 98.24763 * 12 11 10 14 14 C 1.50702 * 109.82912 * 219.12731 * 12 11 10 15 15 H 1.07997 * 119.99997 * 0.02562 * 14 12 11 16 16 C 1.37876 * 119.99834 * 180.02562 * 14 12 11 17 17 N 1.31510 * 120.00034 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99930 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47163 * 59.99968 * 18 16 14 20 20 H 1.48503 * 109.47226 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47165 * 300.00181 * 18 16 14 22 22 O 1.43375 * 107.61174 * 338.55917 * 12 11 10 23 23 C 1.38223 * 119.99212 * 180.27479 * 2 1 3 24 24 H 1.09002 * 109.47152 * 269.72340 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.72440 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.72421 * 1 2 3 27 27 H 1.07995 * 120.00701 * 0.02562 * 3 2 1 28 28 H 1.07997 * 120.00600 * 179.70025 * 6 4 3 29 29 H 1.09004 * 111.12657 * 322.55793 * 10 8 7 30 30 H 1.09000 * 111.12597 * 86.67641 * 10 8 7 31 31 H 1.09000 * 110.84722 * 152.32315 * 11 10 8 32 32 H 1.08996 * 110.85068 * 275.94280 * 11 10 8 33 33 H 0.96997 * 119.99998 * 179.97438 * 17 16 14 34 34 H 1.07994 * 119.98801 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1973 0.0000 4 6 3.5814 1.1971 0.0044 5 17 4.4499 2.7002 0.0104 6 6 4.2725 -0.0017 -0.0019 7 6 3.5805 -1.1979 -0.0067 8 6 4.3332 -2.5036 -0.0141 9 1 3.7231 -3.2886 -0.4608 10 6 4.7434 -2.8959 1.4276 11 6 5.9709 -3.8052 1.1477 12 6 6.5931 -3.1409 -0.0993 13 1 7.4198 -2.4962 0.1988 14 6 7.0884 -4.2006 -1.0495 15 1 6.9757 -5.2452 -0.7997 16 6 7.6854 -3.8364 -2.2378 17 7 7.8222 -2.5644 -2.5422 18 14 8.2988 -5.1499 -3.4159 19 1 7.1623 -6.0095 -3.8341 20 1 8.8954 -4.5026 -4.6118 21 1 9.3256 -5.9819 -2.7386 22 8 5.5690 -2.3626 -0.7327 23 6 2.1980 -1.1971 -0.0057 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3633 -0.8875 -0.5181 26 1 -0.3633 0.8925 -0.5096 27 1 1.6580 2.1325 0.0004 28 1 5.3525 -0.0025 -0.0033 29 1 5.0287 -2.0182 2.0076 30 1 3.9480 -3.4508 1.9251 31 1 6.6674 -3.7855 1.9859 32 1 5.6560 -4.8252 0.9276 33 1 8.2425 -2.3082 -3.3779 34 1 1.6577 -2.1322 -0.0098 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395165086.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:51 Heat of formation + Delta-G solvation = -58.653803 kcal Electronic energy + Delta-G solvation = -17750.972283 eV Core-core repulsion = 14866.194070 eV Total energy + Delta-G solvation = -2884.778213 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.89189 -39.39621 -37.46317 -34.88475 -33.73332 -32.74414 -32.28532 -29.60981 -27.81599 -26.57105 -23.76910 -22.99739 -22.03243 -21.10119 -18.61249 -17.88978 -17.34477 -16.74497 -16.46781 -15.97593 -15.72626 -15.09202 -14.81808 -14.29926 -14.16030 -13.85455 -13.67335 -13.65141 -13.22095 -12.92503 -12.77934 -12.52983 -12.42044 -12.29017 -12.22934 -12.12836 -11.92630 -11.57373 -11.51592 -11.10379 -10.67403 -9.96949 -9.57170 -9.54020 -8.12119 -6.34356 0.18832 0.30010 1.14229 1.39657 1.42363 1.50053 2.40935 2.58801 3.07935 3.51221 3.74791 3.84206 3.95501 4.12409 4.22509 4.27632 4.41138 4.45496 4.56906 4.67083 4.72489 4.90815 4.92790 4.94809 4.96388 5.10147 5.19113 5.26823 5.31184 5.49802 5.54782 5.68885 5.75956 5.89581 6.18823 6.59665 7.03481 7.43030 8.94497 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021290 B = 0.005403 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.844760 B = 5181.346677 C = 5679.654465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.072 4.072 3 C -0.119 4.119 4 C -0.040 4.040 5 Cl -0.078 7.078 6 C -0.113 4.113 7 C -0.070 4.070 8 C 0.102 3.898 9 H 0.067 0.933 10 C -0.130 4.130 11 C -0.136 4.136 12 C 0.197 3.803 13 H 0.000 1.000 14 C -0.564 4.564 15 H 0.064 0.936 16 C 0.022 3.978 17 N -0.904 5.904 18 Si 0.959 3.041 19 H -0.269 1.269 20 H -0.286 1.286 21 H -0.264 1.264 22 O -0.385 6.385 23 C -0.113 4.113 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.155 0.845 28 H 0.104 0.896 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.260 0.740 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.001 5.122 7.447 17.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.072 4.072 3 C -0.137 4.137 4 C -0.066 4.066 5 Cl -0.049 7.049 6 C -0.132 4.132 7 C -0.071 4.071 8 C 0.044 3.956 9 H 0.085 0.915 10 C -0.167 4.167 11 C -0.174 4.174 12 C 0.142 3.858 13 H 0.017 0.983 14 C -0.601 4.601 15 H 0.082 0.918 16 C -0.180 4.180 17 N -0.541 5.541 18 Si 0.783 3.217 19 H -0.194 1.194 20 H -0.211 1.211 21 H -0.188 1.188 22 O -0.305 6.305 23 C -0.131 4.131 24 H 0.107 0.893 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.172 0.828 28 H 0.123 0.877 29 H 0.087 0.913 30 H 0.123 0.877 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -14.817 5.508 7.146 17.348 hybrid contribution 1.238 -0.373 -0.743 1.491 sum -13.579 5.135 6.403 15.867 Atomic orbital electron populations 1.20849 0.87486 1.04201 1.03837 1.20180 0.98151 0.91227 0.97631 1.21167 0.90772 1.00006 1.01763 1.20998 0.93219 0.86359 1.06056 1.98341 1.77362 1.32124 1.97046 1.20802 1.00041 0.91364 1.00996 1.20010 0.94471 0.93884 0.98699 1.21819 0.88182 0.92788 0.92784 0.91491 1.23177 0.98401 0.99678 0.95448 1.23094 0.97121 0.99541 0.97639 1.20221 0.86395 0.89062 0.90170 0.98274 1.21805 1.39669 0.93172 1.05493 0.91781 1.25957 0.94954 0.97229 0.99811 1.70184 1.42584 1.17471 1.23901 0.85629 0.78829 0.79143 0.78088 1.19386 1.21113 1.18836 1.88762 1.18113 1.70548 1.53056 1.21188 0.92020 0.99616 1.00262 0.89306 0.90224 0.90064 0.82775 0.87740 0.91292 0.87726 0.90557 0.90952 0.93147 0.83294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 10.01 71.24 0.71 -0.79 16 2 C -0.07 -1.64 5.88 -19.87 -0.12 -1.75 16 3 C -0.12 -2.98 9.49 22.29 0.21 -2.77 16 4 C -0.04 -1.26 6.32 22.33 0.14 -1.12 16 5 Cl -0.08 -2.32 28.96 -2.72 -0.08 -2.40 16 6 C -0.11 -4.28 9.15 22.29 0.20 -4.08 16 7 C -0.07 -2.49 5.05 -19.87 -0.10 -2.59 16 8 C 0.10 4.10 3.65 30.52 0.11 4.21 16 9 H 0.07 2.60 8.08 -2.39 -0.02 2.58 16 10 C -0.13 -4.40 6.56 32.05 0.21 -4.19 16 11 C -0.14 -5.45 6.53 31.86 0.21 -5.25 16 12 C 0.20 10.45 3.36 30.32 0.10 10.55 16 13 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 14 C -0.56 -32.20 8.74 25.60 0.22 -31.98 16 15 H 0.06 3.48 7.52 -2.91 -0.02 3.45 16 16 C 0.02 1.30 5.41 84.66 0.46 1.75 16 17 N -0.90 -56.36 12.93 21.45 0.28 -56.09 16 18 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 21 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 22 O -0.38 -20.52 9.33 -148.98 -1.39 -21.91 16 23 C -0.11 -3.06 9.35 22.27 0.21 -2.85 16 24 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 0.98 8.09 -2.39 -0.02 0.97 16 26 H 0.08 0.94 8.08 -2.38 -0.02 0.92 16 27 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 28 H 0.10 4.65 7.58 -2.91 -0.02 4.63 16 29 H 0.07 2.31 8.05 -2.39 -0.02 2.30 16 30 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.07 2.80 7.65 -2.39 -0.02 2.78 16 33 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 34 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -68.99 303.62 4.50 -64.50 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.09 Total: 9.96 kcal Atomic # 6 Polarization: -43.42 SS G_CDS: 2.57 Total: -40.85 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.28 Total: -56.09 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -1.39 Total: -21.91 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -0.08 Total: -2.40 kcal Total: -68.99 4.50 -64.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395165086.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.844 kcal (2) G-P(sol) polarization free energy of solvation -68.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds