Wall clock time and date at job start Mon Mar 30 2020 06:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34229 * 117.00184 * 2 1 4 4 O 1.20820 * 119.99974 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99990 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47172 * 180.02562 * 5 3 2 7 7 C 1.50706 * 109.47090 * 179.97438 * 6 5 3 8 8 C 1.36438 * 120.01867 * 264.72336 * 7 6 5 9 9 C 1.38927 * 120.61994 * 179.77354 * 8 7 6 10 10 C 1.38100 * 120.64764 * 0.50730 * 9 8 7 11 11 C 1.38874 * 120.01427 * 359.74854 * 10 9 8 12 12 S 1.76200 * 120.30906 * 180.02562 * 11 10 9 13 13 C 1.40715 * 120.01495 * 84.99965 * 7 6 5 14 14 C 1.40966 * 120.32127 * 359.95532 * 13 7 6 15 15 H 1.07993 * 119.99665 * 45.28845 * 14 13 7 16 16 C 1.39901 * 120.00279 * 225.28982 * 14 13 7 17 17 N 1.30902 * 119.99722 * 20.87156 * 16 14 13 18 18 Si 1.86796 * 120.00155 * 200.87310 * 16 14 13 19 19 H 1.48502 * 109.46738 * 89.99996 * 18 16 14 20 20 H 1.48500 * 109.47155 * 209.99937 * 18 16 14 21 21 H 1.48499 * 109.47262 * 329.99911 * 18 16 14 22 22 H 1.08993 * 109.47203 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.46902 * 300.00489 * 1 2 3 24 24 H 1.09007 * 109.46831 * 60.00176 * 1 2 3 25 25 H 1.08997 * 109.47274 * 59.99986 * 5 3 2 26 26 H 1.09001 * 109.46966 * 299.99960 * 5 3 2 27 27 H 1.08997 * 109.47104 * 59.99794 * 6 5 3 28 28 H 1.09001 * 109.47070 * 299.99808 * 6 5 3 29 29 H 1.08000 * 119.69197 * 0.02562 * 8 7 6 30 30 H 1.08005 * 119.67659 * 180.23927 * 9 8 7 31 31 H 1.07998 * 119.99369 * 179.77496 * 10 9 8 32 32 H 1.41000 * 100.00233 * 269.98137 * 12 11 10 33 33 H 0.96995 * 119.99843 * 181.40297 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 6 5.5052 2.8208 0.0023 8 6 6.1802 2.9649 1.1792 9 6 7.5677 3.0341 1.1953 10 6 8.2895 2.9690 0.0198 11 6 7.6293 2.8277 -1.1938 12 16 8.5425 2.7431 -2.6983 13 6 6.2147 2.7517 -1.2109 14 6 5.5246 2.6078 -2.4317 15 1 4.6525 3.2120 -2.6334 16 6 5.9694 1.6823 -3.3818 17 7 6.7358 0.6861 -3.0163 18 14 5.4696 1.8681 -5.1720 19 1 6.4714 2.7037 -5.8814 20 1 5.4024 0.5283 -5.8089 21 1 4.1375 2.5200 -5.2490 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 3.9564 0.7805 -0.8891 26 1 3.9557 0.7808 0.8908 27 1 3.6102 3.2359 0.8910 28 1 3.6109 3.2363 -0.8889 29 1 5.6310 3.0215 2.1075 30 1 8.0867 3.1443 2.1361 31 1 9.3676 3.0275 0.0442 32 1 8.5967 4.1127 -3.0292 33 1 7.0608 0.0560 -3.6782 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396021405.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:00 Heat of formation + Delta-G solvation = -74.075302 kcal Electronic energy + Delta-G solvation = -17883.845150 eV Core-core repulsion = 15000.441917 eV Total energy + Delta-G solvation = -2883.403233 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.10541 -37.98192 -36.22624 -33.65686 -33.16605 -29.82275 -29.37406 -27.41146 -25.38075 -23.79092 -21.38450 -20.59054 -19.56438 -17.40237 -17.14514 -16.30213 -16.21181 -15.95653 -15.33375 -14.43232 -14.38237 -13.73785 -13.41116 -13.19474 -12.72962 -12.37522 -12.23369 -11.97676 -11.73750 -11.46136 -11.23885 -11.15516 -10.85595 -10.64571 -10.60146 -10.32319 -10.24532 -10.04096 -9.52072 -9.48998 -8.95009 -7.55643 -7.34970 -6.73189 -6.35183 -4.45303 2.33562 2.59796 2.72033 3.09551 3.15450 3.18494 3.21787 3.27430 4.02801 4.07782 4.72705 5.18115 5.19745 5.25697 5.29644 5.57829 5.71483 5.87830 6.02074 6.07401 6.27527 6.36007 6.50774 6.68079 6.68897 6.87062 7.03308 7.25452 7.33865 7.59378 7.66754 7.88400 8.03410 8.11446 8.43174 8.74536 8.87830 10.28767 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016871 B = 0.007712 C = 0.005700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.285502 B = 3629.733159 C = 4911.412430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.462 3.538 4 O -0.516 6.516 5 C -0.103 4.103 6 C -0.035 4.035 7 C -0.175 4.175 8 C -0.071 4.071 9 C -0.241 4.241 10 C -0.047 4.047 11 C -0.170 4.170 12 S -0.133 6.133 13 C 0.167 3.833 14 C -0.487 4.487 15 H 0.083 0.917 16 C 0.116 3.884 17 N -0.767 5.767 18 Si 0.892 3.108 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.267 1.267 22 H 0.096 0.904 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.120 0.880 26 H 0.096 0.904 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.035 0.965 33 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.033 -1.778 3.255 6.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.307 3.693 4 O -0.404 6.404 5 C -0.140 4.140 6 C -0.073 4.073 7 C -0.178 4.178 8 C -0.089 4.089 9 C -0.262 4.262 10 C -0.068 4.068 11 C -0.284 4.284 12 S 0.024 5.976 13 C 0.162 3.838 14 C -0.515 4.515 15 H 0.101 0.899 16 C -0.106 4.106 17 N -0.390 5.390 18 Si 0.717 3.283 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.191 1.191 22 H 0.114 0.886 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.138 0.862 26 H 0.115 0.885 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.000 1.000 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.654 -1.998 2.388 5.600 hybrid contribution -0.815 0.926 -0.106 1.238 sum -5.469 -1.073 2.282 6.022 Atomic orbital electron populations 1.23169 0.77451 1.03111 1.02199 1.86566 1.22667 1.34393 1.84427 1.24423 0.92866 0.80768 0.71262 1.90611 1.67509 1.36397 1.45891 1.21485 0.84817 1.01437 1.06300 1.19965 0.92737 0.92547 1.02025 1.19550 0.93787 1.11432 0.93032 1.20397 0.94074 0.98206 0.96263 1.20348 0.93814 1.15719 0.96329 1.21063 0.97670 0.95849 0.92207 1.21259 0.95671 1.18739 0.92691 1.86322 1.70421 1.08331 1.32480 1.17564 0.89924 0.84194 0.92077 1.19226 1.12673 1.19871 0.99737 0.89940 1.25422 0.92355 0.93192 0.99657 1.69647 1.24093 1.08755 1.36554 0.86569 0.79798 0.78571 0.83385 1.18969 1.20394 1.19108 0.88590 0.92302 0.92162 0.86196 0.88547 0.92793 0.90698 0.88821 0.88707 0.88299 0.99959 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.47 16 2 O -0.36 -5.67 10.57 -39.26 -0.41 -6.09 16 3 C 0.46 8.11 7.96 36.00 0.29 8.40 16 4 O -0.52 -10.06 15.73 -18.75 -0.29 -10.35 16 5 C -0.10 -1.85 5.79 -27.88 -0.16 -2.01 16 6 C -0.04 -0.69 4.16 -27.88 -0.12 -0.81 16 7 C -0.18 -3.84 5.15 -104.33 -0.54 -4.38 16 8 C -0.07 -1.45 9.58 -39.98 -0.38 -1.84 16 9 C -0.24 -4.96 10.03 -39.38 -0.40 -5.36 16 10 C -0.05 -1.03 9.80 -39.40 -0.39 -1.42 16 11 C -0.17 -4.13 5.80 -38.04 -0.22 -4.35 16 12 S -0.13 -3.09 21.62 -107.50 -2.32 -5.41 16 13 C 0.17 4.09 5.26 -106.62 -0.56 3.53 16 14 C -0.49 -11.96 7.49 -37.93 -0.28 -12.24 16 15 H 0.08 2.02 7.01 -52.49 -0.37 1.65 16 16 C 0.12 2.76 3.66 -17.33 -0.06 2.70 16 17 N -0.77 -18.89 11.15 55.55 0.62 -18.27 16 18 Si 0.89 18.71 29.61 -169.99 -5.03 13.68 16 19 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 22 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 24 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 25 H 0.12 2.36 7.96 -51.93 -0.41 1.95 16 26 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 27 H 0.05 0.99 7.99 -51.93 -0.42 0.57 16 28 H 0.07 1.57 6.72 -51.93 -0.35 1.22 16 29 H 0.09 1.66 8.05 -52.49 -0.42 1.24 16 30 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 31 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 32 H 0.04 0.79 9.55 96.90 0.93 1.72 16 33 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 LS Contribution 299.47 15.07 4.51 4.51 Total: -1.00 -27.06 299.47 -7.40 -34.46 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -2.71 Total: 3.77 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -1.75 Total: -16.30 kcal Atomic # 7 Polarization: -18.89 SS G_CDS: 0.62 Total: -18.27 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.71 Total: -16.44 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.32 Total: -5.41 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.06 -7.40 -34.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396021405.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.614 kcal (2) G-P(sol) polarization free energy of solvation -27.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds