Wall clock time and date at job start Mon Mar 30 2020 06:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34229 * 117.00184 * 2 1 4 4 O 1.20820 * 119.99974 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99990 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47172 * 180.02562 * 5 3 2 7 7 C 1.50706 * 109.47090 * 179.97438 * 6 5 3 8 8 C 1.36438 * 120.01867 * 264.72336 * 7 6 5 9 9 C 1.38927 * 120.61994 * 179.77354 * 8 7 6 10 10 C 1.38100 * 120.64764 * 0.50730 * 9 8 7 11 11 C 1.38874 * 120.01427 * 359.74854 * 10 9 8 12 12 S 1.76200 * 120.30906 * 180.02562 * 11 10 9 13 13 C 1.40715 * 120.01495 * 84.99965 * 7 6 5 14 14 C 1.40966 * 120.32127 * 359.95532 * 13 7 6 15 15 H 1.07993 * 119.99665 * 45.28845 * 14 13 7 16 16 C 1.39901 * 120.00279 * 225.28982 * 14 13 7 17 17 N 1.30902 * 119.99722 * 20.87156 * 16 14 13 18 18 Si 1.86796 * 120.00155 * 200.87310 * 16 14 13 19 19 H 1.48502 * 109.46738 * 89.99996 * 18 16 14 20 20 H 1.48500 * 109.47155 * 209.99937 * 18 16 14 21 21 H 1.48499 * 109.47262 * 329.99911 * 18 16 14 22 22 H 1.08993 * 109.47203 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.46902 * 300.00489 * 1 2 3 24 24 H 1.09007 * 109.46831 * 60.00176 * 1 2 3 25 25 H 1.08997 * 109.47274 * 59.99986 * 5 3 2 26 26 H 1.09001 * 109.46966 * 299.99960 * 5 3 2 27 27 H 1.08997 * 109.47104 * 59.99794 * 6 5 3 28 28 H 1.09001 * 109.47070 * 299.99808 * 6 5 3 29 29 H 1.08000 * 119.69197 * 0.02562 * 8 7 6 30 30 H 1.08005 * 119.67659 * 180.23927 * 9 8 7 31 31 H 1.07998 * 119.99369 * 179.77496 * 10 9 8 32 32 H 1.41000 * 100.00233 * 269.98137 * 12 11 10 33 33 H 0.96995 * 119.99843 * 181.40297 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 6 5.5052 2.8208 0.0023 8 6 6.1802 2.9649 1.1792 9 6 7.5677 3.0341 1.1953 10 6 8.2895 2.9690 0.0198 11 6 7.6293 2.8277 -1.1938 12 16 8.5425 2.7431 -2.6983 13 6 6.2147 2.7517 -1.2109 14 6 5.5246 2.6078 -2.4317 15 1 4.6525 3.2120 -2.6334 16 6 5.9694 1.6823 -3.3818 17 7 6.7358 0.6861 -3.0163 18 14 5.4696 1.8681 -5.1720 19 1 6.4714 2.7037 -5.8814 20 1 5.4024 0.5283 -5.8089 21 1 4.1375 2.5200 -5.2490 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 3.9564 0.7805 -0.8891 26 1 3.9557 0.7808 0.8908 27 1 3.6102 3.2359 0.8910 28 1 3.6109 3.2363 -0.8889 29 1 5.6310 3.0215 2.1075 30 1 8.0867 3.1443 2.1361 31 1 9.3676 3.0275 0.0442 32 1 8.5967 4.1127 -3.0292 33 1 7.0608 0.0560 -3.6782 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396021405.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:59 Heat of formation + Delta-G solvation = -86.870560 kcal Electronic energy + Delta-G solvation = -17884.399994 eV Core-core repulsion = 15000.441917 eV Total energy + Delta-G solvation = -2883.958077 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.45396 -39.65261 -37.55043 -35.42281 -34.74479 -31.56327 -30.90937 -28.55989 -27.10005 -25.30566 -23.10790 -22.03960 -21.15153 -19.08416 -18.61332 -17.81500 -17.60721 -17.41525 -17.04560 -16.09347 -15.98757 -15.36373 -14.77610 -14.53461 -14.41242 -13.95934 -13.66693 -13.47908 -13.17478 -13.06512 -12.91748 -12.68426 -12.57963 -12.27417 -11.93790 -11.89204 -11.75130 -11.51443 -11.26236 -11.19198 -10.71561 -9.25727 -9.11562 -8.51749 -8.16517 -6.28625 0.60010 1.01281 1.21384 1.42720 1.47481 1.51199 1.54644 1.87102 2.27689 2.32959 2.95433 3.55070 3.88676 4.20790 4.32448 4.34311 4.35644 4.45597 4.51459 4.70975 4.78432 4.78999 4.92745 5.07743 5.24863 5.31346 5.41598 5.48961 5.66707 5.89563 5.95624 6.13339 6.34741 6.63239 6.77551 6.97300 7.07040 8.51678 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016871 B = 0.007712 C = 0.005700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.285502 B = 3629.733159 C = 4911.412430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.368 6.368 3 C 0.470 3.530 4 O -0.539 6.539 5 C -0.096 4.096 6 C -0.028 4.028 7 C -0.183 4.183 8 C -0.073 4.073 9 C -0.231 4.231 10 C -0.061 4.061 11 C -0.198 4.198 12 S -0.138 6.138 13 C 0.141 3.859 14 C -0.508 4.508 15 H 0.071 0.929 16 C 0.092 3.908 17 N -0.794 5.794 18 Si 0.937 3.063 19 H -0.268 1.268 20 H -0.269 1.269 21 H -0.268 1.268 22 H 0.132 0.868 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.099 0.901 26 H 0.116 0.884 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.114 0.886 32 H 0.037 0.963 33 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.548 -2.192 4.575 7.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C 0.315 3.685 4 O -0.429 6.429 5 C -0.133 4.133 6 C -0.065 4.065 7 C -0.185 4.185 8 C -0.091 4.091 9 C -0.251 4.251 10 C -0.082 4.082 11 C -0.311 4.311 12 S 0.020 5.980 13 C 0.136 3.864 14 C -0.537 4.537 15 H 0.089 0.911 16 C -0.127 4.127 17 N -0.419 5.419 18 Si 0.760 3.240 19 H -0.193 1.193 20 H -0.193 1.193 21 H -0.192 1.192 22 H 0.150 0.850 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.117 0.883 26 H 0.134 0.866 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.132 0.868 32 H 0.002 0.998 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.175 -2.426 3.713 6.815 hybrid contribution -0.686 1.061 -0.369 1.316 sum -5.861 -1.365 3.344 6.884 Atomic orbital electron populations 1.23546 0.75012 1.05641 1.02461 1.86535 1.25020 1.33050 1.83819 1.24180 0.92586 0.81021 0.70728 1.90601 1.67941 1.37241 1.47145 1.21306 0.85570 1.00229 1.06194 1.19860 0.91447 0.93604 1.01620 1.19845 0.94927 1.10809 0.92958 1.20785 0.94414 0.96910 0.97027 1.20795 0.94090 1.13144 0.97105 1.21335 0.98736 0.96016 0.92095 1.21572 0.96019 1.19919 0.93597 1.86220 1.70145 1.08522 1.33159 1.17875 0.90485 0.84994 0.93049 1.19226 1.12945 1.20654 1.00874 0.91137 1.25843 0.92240 0.92654 1.01989 1.69677 1.25488 1.09379 1.37342 0.85887 0.79176 0.78768 0.80146 1.19275 1.19325 1.19250 0.84990 0.91605 0.92405 0.88291 0.86615 0.91270 0.92890 0.85442 0.85388 0.86761 0.99804 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.56 113.37 1.20 1.76 16 2 O -0.37 -10.89 10.57 -51.41 -0.54 -11.43 16 3 C 0.47 16.03 7.96 71.23 0.57 16.60 16 4 O -0.54 -20.61 15.73 21.98 0.35 -20.27 16 5 C -0.10 -3.37 5.79 29.85 0.17 -3.20 16 6 C -0.03 -1.07 4.16 29.85 0.12 -0.95 16 7 C -0.18 -7.86 5.15 -19.68 -0.10 -7.96 16 8 C -0.07 -2.80 9.58 22.01 0.21 -2.59 16 9 C -0.23 -8.82 10.03 22.40 0.22 -8.59 16 10 C -0.06 -2.60 9.80 22.39 0.22 -2.38 16 11 C -0.20 -9.57 5.80 23.27 0.13 -9.43 16 12 S -0.14 -6.44 21.62 -56.49 -1.22 -7.66 16 13 C 0.14 6.92 5.26 -21.16 -0.11 6.81 16 14 C -0.51 -25.53 7.49 23.34 0.17 -25.35 16 15 H 0.07 3.59 7.01 -2.91 -0.02 3.57 16 16 C 0.09 4.46 3.66 85.23 0.31 4.77 16 17 N -0.79 -39.59 11.15 21.82 0.24 -39.35 16 18 Si 0.94 38.72 29.61 68.60 2.03 40.75 16 19 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 20 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 21 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 22 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.07 1.32 8.13 -2.39 -0.02 1.30 16 24 H 0.06 1.26 8.13 -2.38 -0.02 1.24 16 25 H 0.10 3.96 7.96 -2.39 -0.02 3.94 16 26 H 0.12 3.58 8.14 -2.39 -0.02 3.56 16 27 H 0.07 2.42 7.99 -2.39 -0.02 2.40 16 28 H 0.05 2.26 6.72 -2.39 -0.02 2.25 16 29 H 0.13 3.98 8.05 -2.91 -0.02 3.96 16 30 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 31 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16 32 H 0.04 1.67 9.55 73.80 0.70 2.37 16 33 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 Total: -1.00 -57.47 299.47 5.81 -51.66 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 1.83 Total: 16.81 kcal Atomic # 6 Polarization: -33.64 SS G_CDS: 3.12 Total: -30.51 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.24 Total: -39.35 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.20 Total: -31.70 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Atomic # 16 Polarization: -6.44 SS G_CDS: -1.22 Total: -7.66 kcal Total: -57.47 5.81 -51.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396021405.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.210 kcal (2) G-P(sol) polarization free energy of solvation -57.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds