Wall clock time and date at job start Mon Mar 30 2020 06:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34233 * 116.99902 * 2 1 4 4 O 1.20825 * 120.00252 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99752 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.47079 * 180.02562 * 5 3 2 7 7 C 1.50697 * 109.47430 * 179.97438 * 6 5 3 8 8 C 1.36281 * 119.92540 * 99.99497 * 7 6 5 9 9 C 1.40914 * 119.84655 * 180.02562 * 8 7 6 10 10 C 1.41065 * 120.14707 * 180.02562 * 9 8 7 11 11 H 1.08003 * 120.00408 * 24.62946 * 10 9 8 12 12 C 1.39837 * 120.00333 * 204.62918 * 10 9 8 13 13 N 1.30921 * 119.99622 * 18.00508 * 12 10 9 14 14 Si 1.86802 * 120.00162 * 198.00538 * 12 10 9 15 15 H 1.48495 * 109.47182 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.46923 * 120.00374 * 14 12 10 17 17 H 1.48508 * 109.46791 * 239.99828 * 14 12 10 18 18 C 1.40951 * 119.70772 * 0.02562 * 9 8 7 19 19 C 1.36245 * 119.84532 * 0.25230 * 18 9 8 20 20 C 1.39677 * 119.92267 * 279.97741 * 7 6 5 21 21 S 1.76196 * 119.84857 * 0.02562 * 20 7 6 22 22 H 1.09004 * 109.47584 * 60.00148 * 1 2 3 23 23 H 1.09001 * 109.46993 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46840 * 300.00007 * 1 2 3 25 25 H 1.08997 * 109.47907 * 59.99545 * 5 3 2 26 26 H 1.09004 * 109.47204 * 299.99549 * 5 3 2 27 27 H 1.08995 * 109.47374 * 59.99530 * 6 5 3 28 28 H 1.09004 * 109.46701 * 299.99817 * 6 5 3 29 29 H 1.08001 * 120.07838 * 0.02562 * 8 7 6 30 30 H 0.97005 * 120.00031 * 180.02562 * 13 12 10 31 31 H 1.08001 * 120.07637 * 179.97438 * 18 9 8 32 32 H 1.07999 * 119.92480 * 179.74866 * 19 18 9 33 33 H 1.41006 * 100.00069 * 90.00644 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5662 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 6 5.5050 2.8210 0.0002 8 6 6.1732 3.0620 -1.1628 9 6 7.5804 3.1349 -1.1610 10 6 8.2785 3.3845 -2.3611 11 1 7.7883 3.8998 -3.1739 12 6 9.6053 2.9647 -2.4986 13 7 10.0905 2.0540 -1.6928 14 14 10.6853 3.7034 -3.8318 15 1 9.9048 4.7036 -4.6035 16 1 11.8591 4.3651 -3.2078 17 1 11.1504 2.6280 -4.7443 18 6 8.2875 2.9573 0.0454 19 6 7.6074 2.7114 1.2001 20 6 6.2117 2.6474 1.1924 21 16 5.3397 2.3361 2.6915 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 3.9557 0.7809 -0.8907 26 1 3.9563 0.7806 0.8892 27 1 3.6107 3.2357 0.8906 28 1 3.6100 3.2368 -0.8894 29 1 5.6255 3.1967 -2.0838 30 1 11.0110 1.7631 -1.7879 31 1 9.3661 3.0116 0.0536 32 1 8.1481 2.5711 2.1244 33 1 5.2908 0.9273 2.6583 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396026855.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:12 Heat of formation + Delta-G solvation = -82.212421 kcal Electronic energy + Delta-G solvation = -17296.875194 eV Core-core repulsion = 14413.119109 eV Total energy + Delta-G solvation = -2883.756085 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.32339 -37.97196 -36.45569 -34.47500 -32.90073 -30.07294 -29.40530 -27.48423 -25.57458 -24.08528 -21.16336 -20.82985 -19.94045 -17.65583 -17.04790 -16.72610 -16.51913 -16.28537 -15.48590 -14.55172 -14.48340 -13.92126 -13.53892 -13.35090 -12.80501 -12.51478 -12.49552 -12.02374 -11.91402 -11.77610 -11.45757 -11.27967 -10.95860 -10.81330 -10.78002 -10.50109 -10.32766 -10.14984 -9.73057 -9.53806 -9.29721 -7.68607 -7.49666 -7.28100 -7.02296 -4.62519 2.16607 2.36307 2.72147 2.76426 2.95245 3.00727 3.02639 3.08393 3.61417 3.74691 4.37969 4.92729 5.04736 5.11074 5.29520 5.38265 5.43342 5.59971 5.82849 6.01091 6.06952 6.35277 6.44205 6.63419 6.76634 6.81013 6.99517 7.12767 7.41053 7.54499 7.81208 7.84850 7.88751 8.04040 8.39393 8.62071 8.71281 9.88908 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.024270 B = 0.004755 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.401702 B = 5887.563546 C = 6663.029744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.463 3.537 4 O -0.507 6.507 5 C -0.104 4.104 6 C -0.064 4.064 7 C -0.011 4.011 8 C -0.224 4.224 9 C 0.129 3.871 10 C -0.443 4.443 11 H 0.085 0.915 12 C 0.074 3.926 13 N -0.775 5.775 14 Si 0.912 3.088 15 H -0.257 1.257 16 H -0.269 1.269 17 H -0.272 1.272 18 C -0.176 4.176 19 C -0.050 4.050 20 C -0.233 4.233 21 S -0.184 6.184 22 H 0.061 0.939 23 H 0.097 0.903 24 H 0.061 0.939 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.285 0.715 31 H 0.121 0.879 32 H 0.097 0.903 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.972 -3.344 1.135 8.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.307 3.693 4 O -0.394 6.394 5 C -0.142 4.142 6 C -0.102 4.102 7 C -0.014 4.014 8 C -0.245 4.245 9 C 0.126 3.874 10 C -0.471 4.471 11 H 0.103 0.897 12 C -0.146 4.146 13 N -0.399 5.399 14 Si 0.736 3.264 15 H -0.181 1.181 16 H -0.194 1.194 17 H -0.197 1.197 18 C -0.198 4.198 19 C -0.072 4.072 20 C -0.347 4.347 21 S -0.027 6.027 22 H 0.080 0.920 23 H 0.116 0.884 24 H 0.080 0.920 25 H 0.122 0.878 26 H 0.117 0.883 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.096 0.904 31 H 0.139 0.861 32 H 0.115 0.885 33 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -8.467 -3.138 2.030 9.255 hybrid contribution 0.932 -0.629 -1.495 1.871 sum -7.535 -3.766 0.535 8.440 Atomic orbital electron populations 1.23210 0.76971 1.03305 1.02426 1.86539 1.23045 1.34142 1.84434 1.24104 0.92458 0.80995 0.71751 1.90641 1.67279 1.36271 1.45245 1.21463 0.86011 1.01101 1.05613 1.20413 0.93107 0.92904 1.03776 1.19139 0.92668 0.96858 0.92717 1.20617 0.94418 1.13792 0.95722 1.17763 0.90985 0.85729 0.92966 1.19756 0.95947 1.31063 1.00324 0.89720 1.26045 0.98535 0.92943 0.97117 1.69872 1.16343 1.19937 1.33719 0.86180 0.79756 0.80031 0.80434 1.18079 1.19378 1.19730 1.21036 0.99866 1.07608 0.91247 1.20717 0.92225 0.96949 0.97262 1.20188 0.94664 1.27066 0.92762 1.86299 1.76293 1.08842 1.31294 0.92043 0.88436 0.92029 0.87770 0.88283 0.89433 0.91161 0.88297 0.90368 0.86150 0.88469 0.97755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -5.04 10.57 -39.27 -0.41 -5.46 16 3 C 0.46 7.29 7.96 36.00 0.29 7.57 16 4 O -0.51 -9.04 15.73 -18.75 -0.29 -9.34 16 5 C -0.10 -1.66 5.73 -27.88 -0.16 -1.82 16 6 C -0.06 -1.17 4.05 -27.88 -0.11 -1.28 16 7 C -0.01 -0.23 5.12 -104.79 -0.54 -0.77 16 8 C -0.22 -5.14 9.34 -39.27 -0.37 -5.50 16 9 C 0.13 3.20 5.57 -106.79 -0.60 2.61 16 10 C -0.44 -10.86 9.03 -37.91 -0.34 -11.21 16 11 H 0.08 1.99 7.91 -52.48 -0.41 1.57 16 12 C 0.07 1.72 5.13 -17.34 -0.09 1.63 16 13 N -0.78 -18.55 10.96 55.54 0.61 -17.94 16 14 Si 0.91 17.24 29.60 -169.99 -5.03 12.21 16 15 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 16 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 17 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 18 C -0.18 -4.33 8.63 -39.27 -0.34 -4.67 16 19 C -0.05 -1.15 9.73 -39.75 -0.39 -1.54 16 20 C -0.23 -5.08 6.15 -38.49 -0.24 -5.31 16 21 S -0.18 -3.48 23.28 -107.50 -2.50 -5.99 16 22 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 23 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 25 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 26 H 0.10 1.58 6.68 -51.93 -0.35 1.23 16 27 H 0.09 1.63 7.20 -51.93 -0.37 1.26 16 28 H 0.07 1.25 7.94 -51.93 -0.41 0.84 16 29 H 0.10 2.13 8.01 -52.49 -0.42 1.70 16 30 H 0.29 6.15 8.30 -40.82 -0.34 5.81 16 31 H 0.12 3.03 6.16 -52.49 -0.32 2.71 16 32 H 0.10 2.05 8.06 -52.49 -0.42 1.62 16 33 H 0.06 1.02 9.04 96.90 0.88 1.90 16 LS Contribution 300.30 15.07 4.53 4.53 Total: -1.00 -26.55 300.30 -7.58 -34.13 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -2.66 Total: 6.72 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -1.81 Total: -18.87 kcal Atomic # 7 Polarization: -18.55 SS G_CDS: 0.61 Total: -17.94 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.71 Total: -14.80 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.03 Total: 12.21 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -2.50 Total: -5.99 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -26.55 -7.58 -34.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396026855.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.078 kcal (2) G-P(sol) polarization free energy of solvation -26.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds