Wall clock time and date at job start Mon Mar 30 2020 06:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34234 * 116.99935 * 2 1 4 4 O 1.20827 * 120.00027 * 0.02562 * 3 2 1 5 5 C 1.50692 * 120.00130 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47359 * 179.97438 * 5 3 2 7 7 C 1.50701 * 109.47547 * 179.97438 * 6 5 3 8 8 C 1.38374 * 120.17077 * 269.72765 * 7 6 5 9 9 S 1.76207 * 119.95387 * 0.02562 * 8 7 6 10 10 C 1.39358 * 120.08819 * 179.76870 * 8 7 6 11 11 C 1.38501 * 120.41642 * 0.50565 * 10 8 7 12 12 C 1.37667 * 120.32965 * 359.74717 * 11 10 8 13 13 C 1.40551 * 120.15951 * 90.00128 * 7 6 5 14 14 C 1.41405 * 120.20605 * 0.02562 * 13 7 6 15 15 H 1.08006 * 119.99880 * 333.75043 * 14 13 7 16 16 C 1.39921 * 120.00166 * 153.75660 * 14 13 7 17 17 N 1.30835 * 119.99764 * 343.93288 * 16 14 13 18 18 Si 1.86799 * 120.00470 * 163.93024 * 16 14 13 19 19 H 1.48505 * 109.46868 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47230 * 119.99846 * 18 16 14 21 21 H 1.48500 * 109.47665 * 240.00303 * 18 16 14 22 22 H 1.08995 * 109.46639 * 299.99734 * 1 2 3 23 23 H 1.09002 * 109.47029 * 59.99770 * 1 2 3 24 24 H 1.08996 * 109.46656 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47513 * 300.00126 * 5 3 2 26 26 H 1.09001 * 109.47562 * 59.99936 * 5 3 2 27 27 H 1.09001 * 109.47447 * 300.00315 * 6 5 3 28 28 H 1.09007 * 109.46605 * 59.99932 * 6 5 3 29 29 H 1.34498 * 102.99747 * 90.00268 * 9 8 7 30 30 H 1.07995 * 119.79421 * 180.28004 * 10 8 7 31 31 H 1.07997 * 119.83276 * 179.72432 * 11 10 8 32 32 H 1.07999 * 120.04707 * 179.97438 * 12 11 10 33 33 H 0.97003 * 119.99670 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7422 -0.0011 7 6 5.5050 2.8212 -0.0011 8 6 6.1992 2.8637 1.1952 9 16 5.3222 2.8249 2.7231 10 6 7.5911 2.9319 1.1933 11 6 8.2897 2.9681 -0.0020 12 6 7.6162 2.9319 -1.2022 13 6 6.2103 2.8577 -1.2163 14 6 5.5121 2.8212 -2.4454 15 1 4.5388 2.3563 -2.4999 16 6 6.0822 3.3873 -3.5910 17 7 7.0906 4.2134 -3.4798 18 14 5.4036 2.9636 -5.2790 19 1 4.2709 2.0143 -5.1331 20 1 4.9280 4.2020 -5.9465 21 1 6.4717 2.3381 -6.0993 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 3.9565 0.7807 0.8891 26 1 3.9558 0.7810 -0.8908 27 1 3.6100 3.2362 -0.8910 28 1 3.6106 3.2365 0.8890 29 1 5.2409 1.5095 2.9918 30 1 8.1282 2.9603 2.1298 31 1 9.3681 3.0254 0.0075 32 1 8.1656 2.9608 -2.1316 33 1 7.4861 4.6056 -4.2741 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396027813.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:15 Heat of formation + Delta-G solvation = -79.668586 kcal Electronic energy + Delta-G solvation = -17764.796746 eV Core-core repulsion = 14881.150970 eV Total energy + Delta-G solvation = -2883.645776 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.16124 -37.97343 -36.27814 -33.79045 -33.30240 -29.82403 -29.34818 -27.44752 -25.57121 -23.81934 -21.42587 -20.65545 -19.53053 -17.86487 -17.23884 -16.52149 -16.33782 -16.18024 -15.48612 -14.66768 -14.41675 -13.94867 -13.42422 -13.24003 -12.91851 -12.52450 -12.28641 -12.04243 -11.73300 -11.55166 -11.34239 -11.06353 -11.02076 -10.67776 -10.65268 -10.43153 -10.28357 -10.16531 -9.51498 -9.48432 -9.29428 -7.57872 -7.53379 -7.39117 -6.87872 -4.50403 2.07456 2.53580 2.60714 2.70846 3.02410 3.03578 3.07218 3.10124 3.58233 3.85554 4.47367 5.10859 5.15497 5.21693 5.36845 5.54088 5.59639 5.74941 6.06546 6.15326 6.24751 6.46981 6.61754 6.67530 6.89100 6.95318 7.00187 7.15798 7.31892 7.61666 7.78212 7.84240 8.02937 8.05666 8.42809 8.72038 8.75605 10.07018 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.012653 B = 0.008642 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.453459 B = 3239.244798 C = 5172.452942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.461 3.539 4 O -0.505 6.505 5 C -0.103 4.103 6 C -0.051 4.051 7 C -0.149 4.149 8 C -0.066 4.066 9 S -0.168 6.168 10 C -0.190 4.190 11 C -0.113 4.113 12 C -0.137 4.137 13 C 0.111 3.889 14 C -0.456 4.456 15 H 0.082 0.918 16 C 0.077 3.923 17 N -0.792 5.792 18 Si 0.906 3.094 19 H -0.260 1.260 20 H -0.273 1.273 21 H -0.271 1.271 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.123 0.877 33 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.164 -6.177 2.986 8.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.305 3.695 4 O -0.392 6.392 5 C -0.140 4.140 6 C -0.089 4.089 7 C -0.153 4.153 8 C -0.178 4.178 9 S -0.010 6.010 10 C -0.212 4.212 11 C -0.133 4.133 12 C -0.156 4.156 13 C 0.107 3.893 14 C -0.485 4.485 15 H 0.100 0.900 16 C -0.141 4.141 17 N -0.417 5.417 18 Si 0.730 3.270 19 H -0.183 1.183 20 H -0.199 1.199 21 H -0.196 1.196 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.114 0.886 25 H 0.107 0.893 26 H 0.125 0.875 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.022 0.978 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.141 0.859 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.728 -5.512 3.663 8.753 hybrid contribution 0.160 -1.060 -1.557 1.891 sum -5.568 -6.572 2.106 8.867 Atomic orbital electron populations 1.23181 0.77256 1.03117 1.02374 1.86544 1.22850 1.34416 1.84589 1.24240 0.92617 0.80906 0.71761 1.90639 1.67250 1.36246 1.45051 1.21498 0.85554 1.02011 1.04973 1.20188 0.92669 0.92042 1.03986 1.19791 0.93427 1.10237 0.91888 1.20552 0.94932 1.10348 0.91982 1.85508 1.76216 1.10528 1.28737 1.20727 0.92167 1.11348 0.96963 1.20727 0.97792 1.01847 0.92937 1.21526 0.94534 1.02820 0.96716 1.17444 0.91663 0.88918 0.91314 1.19580 1.03904 1.32815 0.92203 0.89981 1.25896 0.94115 0.92682 1.01457 1.69802 1.19784 1.20152 1.31920 0.86286 0.79968 0.79498 0.81240 1.18319 1.19854 1.19649 0.92154 0.92072 0.88597 0.89296 0.87528 0.90111 0.90265 0.97780 0.88243 0.88644 0.85950 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.37 -5.54 10.57 -39.27 -0.41 -5.95 16 3 C 0.46 8.01 7.96 36.00 0.29 8.29 16 4 O -0.50 -9.91 15.73 -18.75 -0.29 -10.21 16 5 C -0.10 -1.81 5.78 -27.89 -0.16 -1.97 16 6 C -0.05 -1.04 3.59 -27.88 -0.10 -1.14 16 7 C -0.15 -3.36 5.21 -103.70 -0.54 -3.90 16 8 C -0.07 -1.43 6.10 -39.11 -0.24 -1.67 16 9 S -0.17 -3.12 23.96 -107.50 -2.58 -5.70 16 10 C -0.19 -4.05 9.80 -39.07 -0.38 -4.43 16 11 C -0.11 -2.46 10.01 -39.69 -0.40 -2.86 16 12 C -0.14 -3.28 8.68 -38.82 -0.34 -3.62 16 13 C 0.11 2.71 5.56 -106.85 -0.59 2.12 16 14 C -0.46 -11.10 8.11 -37.75 -0.31 -11.41 16 15 H 0.08 1.93 6.60 -52.48 -0.35 1.58 16 16 C 0.08 1.81 5.16 -17.35 -0.09 1.72 16 17 N -0.79 -19.35 10.96 55.55 0.61 -18.74 16 18 Si 0.91 17.88 29.59 -169.99 -5.03 12.85 16 19 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 22 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 23 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 24 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 26 H 0.11 1.86 7.86 -51.93 -0.41 1.45 16 27 H 0.08 1.77 6.74 -51.93 -0.35 1.42 16 28 H 0.08 1.62 6.72 -51.93 -0.35 1.27 16 29 H 0.06 0.99 9.07 97.61 0.89 1.88 16 30 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 31 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.12 3.03 6.22 -52.49 -0.33 2.70 16 33 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 LS Contribution 298.81 15.07 4.50 4.50 Total: -1.00 -26.58 298.81 -7.56 -34.14 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -2.56 Total: 6.52 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -1.79 Total: -17.42 kcal Atomic # 7 Polarization: -19.35 SS G_CDS: 0.61 Total: -18.74 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.71 Total: -16.16 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.58 Total: -5.70 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -26.58 -7.56 -34.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396027813.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.529 kcal (2) G-P(sol) polarization free energy of solvation -26.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds