Wall clock time and date at job start Mon Mar 30 2020 06:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34234 * 116.99935 * 2 1 4 4 O 1.20827 * 120.00027 * 0.02562 * 3 2 1 5 5 C 1.50692 * 120.00130 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47359 * 179.97438 * 5 3 2 7 7 C 1.50701 * 109.47547 * 179.97438 * 6 5 3 8 8 C 1.38374 * 120.17077 * 269.72765 * 7 6 5 9 9 S 1.76207 * 119.95387 * 0.02562 * 8 7 6 10 10 C 1.39358 * 120.08819 * 179.76870 * 8 7 6 11 11 C 1.38501 * 120.41642 * 0.50565 * 10 8 7 12 12 C 1.37667 * 120.32965 * 359.74717 * 11 10 8 13 13 C 1.40551 * 120.15951 * 90.00128 * 7 6 5 14 14 C 1.41405 * 120.20605 * 0.02562 * 13 7 6 15 15 H 1.08006 * 119.99880 * 333.75043 * 14 13 7 16 16 C 1.39921 * 120.00166 * 153.75660 * 14 13 7 17 17 N 1.30835 * 119.99764 * 343.93288 * 16 14 13 18 18 Si 1.86799 * 120.00470 * 163.93024 * 16 14 13 19 19 H 1.48505 * 109.46868 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47230 * 119.99846 * 18 16 14 21 21 H 1.48500 * 109.47665 * 240.00303 * 18 16 14 22 22 H 1.08995 * 109.46639 * 299.99734 * 1 2 3 23 23 H 1.09002 * 109.47029 * 59.99770 * 1 2 3 24 24 H 1.08996 * 109.46656 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47513 * 300.00126 * 5 3 2 26 26 H 1.09001 * 109.47562 * 59.99936 * 5 3 2 27 27 H 1.09001 * 109.47447 * 300.00315 * 6 5 3 28 28 H 1.09007 * 109.46605 * 59.99932 * 6 5 3 29 29 H 1.34498 * 102.99747 * 90.00268 * 9 8 7 30 30 H 1.07995 * 119.79421 * 180.28004 * 10 8 7 31 31 H 1.07997 * 119.83276 * 179.72432 * 11 10 8 32 32 H 1.07999 * 120.04707 * 179.97438 * 12 11 10 33 33 H 0.97003 * 119.99670 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7422 -0.0011 7 6 5.5050 2.8212 -0.0011 8 6 6.1992 2.8637 1.1952 9 16 5.3222 2.8249 2.7231 10 6 7.5911 2.9319 1.1933 11 6 8.2897 2.9681 -0.0020 12 6 7.6162 2.9319 -1.2022 13 6 6.2103 2.8577 -1.2163 14 6 5.5121 2.8212 -2.4454 15 1 4.5388 2.3563 -2.4999 16 6 6.0822 3.3873 -3.5910 17 7 7.0906 4.2134 -3.4798 18 14 5.4036 2.9636 -5.2790 19 1 4.2709 2.0143 -5.1331 20 1 4.9280 4.2020 -5.9465 21 1 6.4717 2.3381 -6.0993 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 3.9565 0.7807 0.8891 26 1 3.9558 0.7810 -0.8908 27 1 3.6100 3.2362 -0.8910 28 1 3.6106 3.2365 0.8890 29 1 5.2409 1.5095 2.9918 30 1 8.1282 2.9603 2.1298 31 1 9.3681 3.0254 0.0075 32 1 8.1656 2.9608 -2.1316 33 1 7.4861 4.6056 -4.2741 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396027813.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:14 Heat of formation + Delta-G solvation = -92.032768 kcal Electronic energy + Delta-G solvation = -17765.332897 eV Core-core repulsion = 14881.150970 eV Total energy + Delta-G solvation = -2884.181927 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.49674 -39.67651 -37.58758 -35.55386 -34.90305 -31.56870 -30.91016 -28.59478 -27.29403 -25.35838 -23.17197 -22.09206 -21.14604 -19.53508 -18.61563 -18.09266 -17.66798 -17.47269 -17.17130 -16.29119 -16.01214 -15.54189 -14.79153 -14.59323 -14.52134 -14.11608 -13.70003 -13.45970 -13.29780 -13.03177 -12.87233 -12.75046 -12.62693 -12.27951 -12.04543 -11.91280 -11.78588 -11.59058 -11.22329 -11.17086 -11.03002 -9.32045 -9.28181 -8.88783 -8.63326 -6.33627 0.47204 0.91046 1.05929 1.16851 1.39930 1.48012 1.52829 1.81243 2.04929 2.21301 2.71990 3.60989 3.83146 4.12124 4.21234 4.31581 4.33592 4.44758 4.58793 4.65895 4.71117 4.80773 5.00159 5.16479 5.19334 5.25697 5.35695 5.43185 5.59845 5.88176 6.03330 6.05550 6.25308 6.62809 6.73731 6.92612 6.96377 8.33832 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.012653 B = 0.008642 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.453459 B = 3239.244798 C = 5172.452942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.367 6.367 3 C 0.468 3.532 4 O -0.533 6.533 5 C -0.096 4.096 6 C -0.042 4.042 7 C -0.156 4.156 8 C -0.082 4.082 9 S -0.147 6.147 10 C -0.189 4.189 11 C -0.115 4.115 12 C -0.160 4.160 13 C 0.085 3.915 14 C -0.481 4.481 15 H 0.081 0.919 16 C 0.039 3.961 17 N -0.824 5.824 18 Si 0.970 3.030 19 H -0.258 1.258 20 H -0.271 1.271 21 H -0.263 1.263 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.134 0.866 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.124 0.876 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.867 -7.357 3.752 10.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C 0.313 3.687 4 O -0.422 6.422 5 C -0.134 4.134 6 C -0.080 4.080 7 C -0.160 4.160 8 C -0.194 4.194 9 S 0.010 5.990 10 C -0.211 4.211 11 C -0.135 4.135 12 C -0.180 4.180 13 C 0.080 3.920 14 C -0.511 4.511 15 H 0.099 0.901 16 C -0.177 4.177 17 N -0.450 5.450 18 Si 0.792 3.208 19 H -0.182 1.182 20 H -0.196 1.196 21 H -0.188 1.188 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.152 0.848 25 H 0.122 0.878 26 H 0.125 0.875 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.041 0.959 30 H 0.141 0.859 31 H 0.137 0.863 32 H 0.125 0.875 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.430 -6.713 4.439 10.301 hybrid contribution 0.342 -0.732 -1.641 1.829 sum -6.088 -7.445 2.798 10.016 Atomic orbital electron populations 1.23563 0.74869 1.05719 1.02530 1.86515 1.25105 1.32797 1.83910 1.24020 0.92368 0.81191 0.71130 1.90631 1.67769 1.37276 1.46525 1.21323 0.86312 1.00044 1.05695 1.20033 0.91416 0.93832 1.02717 1.20030 0.94445 1.09610 0.91884 1.20821 0.95569 1.09659 0.93335 1.85383 1.75599 1.11843 1.26149 1.21061 0.92340 1.10008 0.97659 1.20994 0.99123 1.00881 0.92465 1.21515 0.94684 1.04744 0.97062 1.17747 0.92208 0.89722 0.92273 1.19762 1.04248 1.33923 0.93128 0.90115 1.26628 0.94295 0.92175 1.04555 1.69853 1.21027 1.21080 1.33086 0.85318 0.79382 0.79139 0.76959 1.18181 1.19641 1.18800 0.91806 0.92204 0.84807 0.87788 0.87534 0.92380 0.90353 0.95944 0.85851 0.86298 0.87481 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.73 16 2 O -0.37 -10.35 10.57 -51.46 -0.54 -10.90 16 3 C 0.47 15.77 7.96 71.23 0.57 16.34 16 4 O -0.53 -20.64 15.73 21.96 0.35 -20.30 16 5 C -0.10 -3.31 5.78 29.85 0.17 -3.14 16 6 C -0.04 -1.73 3.59 29.85 0.11 -1.62 16 7 C -0.16 -7.03 5.21 -19.27 -0.10 -7.13 16 8 C -0.08 -3.45 6.10 22.57 0.14 -3.31 16 9 S -0.15 -5.15 23.96 -56.49 -1.35 -6.50 16 10 C -0.19 -7.76 9.80 22.60 0.22 -7.54 16 11 C -0.11 -4.94 10.01 22.20 0.22 -4.72 16 12 C -0.16 -7.87 8.68 22.76 0.20 -7.68 16 13 C 0.08 4.23 5.56 -21.31 -0.12 4.11 16 14 C -0.48 -24.09 8.11 23.46 0.19 -23.90 16 15 H 0.08 3.91 6.60 -2.91 -0.02 3.89 16 16 C 0.04 1.86 5.16 85.25 0.44 2.30 16 17 N -0.82 -41.35 10.96 21.82 0.24 -41.11 16 18 Si 0.97 37.06 29.59 68.60 2.03 39.09 16 19 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 20 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 21 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 22 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 23 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 24 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 26 H 0.11 3.68 7.86 -2.39 -0.02 3.67 16 27 H 0.06 2.62 6.74 -2.39 -0.02 2.61 16 28 H 0.08 3.18 6.72 -2.38 -0.02 3.16 16 29 H 0.08 2.37 9.07 73.35 0.67 3.04 16 30 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 31 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 32 H 0.11 5.50 6.22 -2.91 -0.02 5.48 16 33 H 0.29 13.11 8.30 -92.71 -0.77 12.34 16 Total: -1.00 -57.04 298.81 5.76 -51.28 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 1.80 Total: 23.00 kcal Atomic # 6 Polarization: -37.80 SS G_CDS: 3.23 Total: -34.57 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.24 Total: -41.11 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.20 Total: -31.19 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 2.03 Total: 39.09 kcal Atomic # 16 Polarization: -5.15 SS G_CDS: -1.35 Total: -6.50 kcal Total: -57.04 5.76 -51.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396027813.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.750 kcal (2) G-P(sol) polarization free energy of solvation -57.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds