Wall clock time and date at job start Mon Mar 30 2020 06:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 116.99501 * 2 1 4 4 O 1.20830 * 120.00203 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99865 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47504 * 180.02562 * 5 3 2 7 7 C 1.50697 * 109.47140 * 180.02562 * 6 5 3 8 8 C 1.38098 * 119.99241 * 265.23196 * 7 6 5 9 9 C 1.38926 * 120.64187 * 180.28707 * 8 7 6 10 10 C 1.36448 * 120.62838 * 359.74014 * 9 8 7 11 11 C 1.40710 * 119.95616 * 0.02562 * 10 9 8 12 12 C 1.40966 * 120.31322 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99943 * 205.10911 * 12 11 10 14 14 C 1.39900 * 120.00215 * 25.11664 * 12 11 10 15 15 N 1.30899 * 120.00121 * 17.41518 * 14 12 11 16 16 Si 1.86793 * 120.00095 * 197.41971 * 14 12 11 17 17 H 1.48499 * 109.47339 * 59.99534 * 16 14 12 18 18 H 1.48501 * 109.47288 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.47400 * 299.99522 * 16 14 12 20 20 C 1.38871 * 119.99065 * 85.00742 * 7 6 5 21 21 S 1.76201 * 120.30941 * 359.97438 * 20 7 6 22 22 H 1.09001 * 109.47650 * 299.99743 * 1 2 3 23 23 H 1.09005 * 109.47119 * 59.99934 * 1 2 3 24 24 H 1.09005 * 109.46773 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46784 * 60.00163 * 5 3 2 26 26 H 1.09001 * 109.47350 * 300.00927 * 5 3 2 27 27 H 1.09000 * 109.46694 * 60.00239 * 6 5 3 28 28 H 1.08999 * 109.46970 * 300.00518 * 6 5 3 29 29 H 1.07998 * 119.67714 * 0.02562 * 8 7 6 30 30 H 1.08003 * 119.68766 * 179.72363 * 9 8 7 31 31 H 1.08000 * 120.02059 * 180.02562 * 10 9 8 32 32 H 0.96994 * 119.99981 * 180.02562 * 15 14 12 33 33 H 1.41001 * 99.99915 * 269.72598 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 0.0006 6 6 4.0000 2.7423 0.0011 7 6 5.5049 2.8211 0.0011 8 6 6.1892 2.9561 1.1930 9 6 7.5760 3.0361 1.2081 10 6 8.2885 2.9774 0.0459 11 6 7.6178 2.8352 -1.1829 12 6 8.3463 2.7744 -2.3882 13 1 7.8795 3.0682 -3.3168 14 6 9.6740 2.3334 -2.3816 15 7 10.1366 1.6652 -1.3555 16 14 10.7865 2.6981 -3.8371 17 1 10.8975 4.1676 -4.0194 18 1 12.1343 2.1278 -3.5851 19 1 10.2124 2.0891 -5.0639 20 6 6.2035 2.7534 -1.1972 21 16 5.3387 2.5746 -2.7219 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.9563 0.7808 -0.8892 26 1 3.9557 0.7810 0.8907 27 1 3.6100 3.2361 0.8911 28 1 3.6105 3.2366 -0.8889 29 1 5.6405 3.0042 2.1220 30 1 8.0952 3.1459 2.1488 31 1 9.3664 3.0401 0.0691 32 1 11.0572 1.3597 -1.3508 33 1 5.2972 1.1683 -2.8164 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396028063.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:18 Heat of formation + Delta-G solvation = -80.374528 kcal Electronic energy + Delta-G solvation = -17418.289674 eV Core-core repulsion = 14534.613286 eV Total energy + Delta-G solvation = -2883.676388 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.31444 -37.87137 -36.44643 -34.43867 -32.86391 -30.02715 -29.33606 -27.45446 -25.47403 -24.05591 -21.14333 -20.83445 -19.90777 -17.65276 -16.88133 -16.52771 -16.46072 -16.26893 -15.37726 -14.66568 -14.38855 -13.88662 -13.51317 -13.33055 -12.64885 -12.62427 -12.46348 -12.15430 -11.75211 -11.70222 -11.23395 -11.08447 -11.01095 -10.78942 -10.59615 -10.55565 -10.31316 -10.15553 -9.86705 -9.37536 -9.20407 -7.57150 -7.48390 -6.98523 -6.81679 -4.55526 2.32126 2.36874 2.65072 2.88817 2.99787 3.03729 3.16808 3.19610 3.81671 3.87602 4.45262 4.93596 5.05071 5.11474 5.32639 5.39675 5.44058 5.61441 5.84014 6.01911 6.12535 6.38091 6.44510 6.48381 6.68824 6.87071 7.06753 7.18973 7.38547 7.66333 7.82319 7.88863 7.95110 8.09291 8.46115 8.68678 8.76718 9.96497 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.029773 B = 0.004950 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.215317 B = 5654.696501 C = 6141.330931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.463 3.537 4 O -0.507 6.507 5 C -0.103 4.103 6 C -0.065 4.065 7 C -0.013 4.013 8 C -0.241 4.241 9 C -0.089 4.089 10 C -0.157 4.157 11 C 0.143 3.857 12 C -0.438 4.438 13 H 0.100 0.900 14 C 0.074 3.926 15 N -0.783 5.783 16 Si 0.913 3.087 17 H -0.260 1.260 18 H -0.278 1.278 19 H -0.262 1.262 20 C -0.222 4.222 21 S -0.171 6.171 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.097 0.903 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.120 0.880 32 H 0.285 0.715 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.126 -2.955 1.814 8.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.306 3.694 4 O -0.395 6.395 5 C -0.140 4.140 6 C -0.103 4.103 7 C -0.016 4.016 8 C -0.263 4.263 9 C -0.108 4.108 10 C -0.178 4.178 11 C 0.137 3.863 12 C -0.466 4.466 13 H 0.117 0.883 14 C -0.146 4.146 15 N -0.407 5.407 16 Si 0.737 3.263 17 H -0.184 1.184 18 H -0.203 1.203 19 H -0.186 1.186 20 C -0.336 4.336 21 S -0.014 6.014 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.116 0.884 25 H 0.119 0.881 26 H 0.121 0.879 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.138 0.862 32 H 0.096 0.904 33 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -8.619 -2.661 1.044 9.080 hybrid contribution 0.983 -0.852 0.387 1.357 sum -7.636 -3.513 1.431 8.526 Atomic orbital electron populations 1.23209 0.76989 1.03301 1.02414 1.86543 1.23030 1.34146 1.84427 1.24128 0.92489 0.80987 0.71748 1.90642 1.67283 1.36278 1.45252 1.21428 0.85913 1.01074 1.05612 1.20422 0.93158 0.92886 1.03841 1.19384 0.92593 0.96889 0.92715 1.20187 0.93985 1.16769 0.95311 1.20528 0.93831 0.99342 0.97118 1.21132 0.99873 1.05039 0.91736 1.17733 0.89636 0.85519 0.93382 1.19914 0.95079 1.35707 0.95933 0.88255 1.26099 0.98710 0.92263 0.97530 1.69852 1.17049 1.23906 1.29879 0.86261 0.78330 0.80333 0.81358 1.18421 1.20308 1.18619 1.20748 0.95275 1.25869 0.91715 1.85934 1.74252 1.09718 1.31469 0.92086 0.92004 0.88440 0.88143 0.87908 0.91390 0.89170 0.88955 0.89100 0.86185 0.90441 0.97485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -5.05 10.57 -39.26 -0.41 -5.46 16 3 C 0.46 7.27 7.96 36.00 0.29 7.56 16 4 O -0.51 -9.04 15.73 -18.75 -0.29 -9.33 16 5 C -0.10 -1.64 5.79 -27.88 -0.16 -1.80 16 6 C -0.07 -1.19 4.10 -27.88 -0.11 -1.30 16 7 C -0.01 -0.27 5.15 -104.44 -0.54 -0.81 16 8 C -0.24 -5.10 9.67 -39.38 -0.38 -5.48 16 9 C -0.09 -1.98 9.96 -39.97 -0.40 -2.38 16 10 C -0.16 -3.86 8.63 -39.29 -0.34 -4.20 16 11 C 0.14 3.64 5.58 -106.62 -0.60 3.04 16 12 C -0.44 -11.06 8.47 -37.93 -0.32 -11.38 16 13 H 0.10 2.48 7.02 -52.48 -0.37 2.11 16 14 C 0.07 1.75 5.14 -17.33 -0.09 1.67 16 15 N -0.78 -19.04 10.97 55.55 0.61 -18.43 16 16 Si 0.91 17.89 29.59 -169.99 -5.03 12.86 16 17 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 18 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 19 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 20 C -0.22 -5.23 6.19 -38.04 -0.24 -5.46 16 21 S -0.17 -3.64 22.27 -107.50 -2.39 -6.04 16 22 H 0.06 0.60 8.13 -51.93 -0.42 0.17 16 23 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 24 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.10 1.65 7.67 -51.93 -0.40 1.25 16 26 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.07 1.18 8.01 -51.93 -0.42 0.76 16 28 H 0.09 1.72 6.98 -51.93 -0.36 1.36 16 29 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 30 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 31 H 0.12 3.02 6.18 -52.49 -0.32 2.69 16 32 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 33 H 0.06 1.23 9.47 96.90 0.92 2.15 16 LS Contribution 299.95 15.07 4.52 4.52 Total: -1.00 -27.15 299.95 -7.45 -34.60 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -2.62 Total: 6.41 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -1.82 Total: -19.13 kcal Atomic # 7 Polarization: -19.04 SS G_CDS: 0.61 Total: -18.43 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.71 Total: -14.79 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -2.39 Total: -6.04 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.15 -7.45 -34.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396028063.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.775 kcal (2) G-P(sol) polarization free energy of solvation -27.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds