Wall clock time and date at job start Mon Mar 30 2020 07:19:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.50699 * 109.47154 * 2 1
4 4 C 1.38301 * 119.83536 * 101.55354 * 3 2 1
5 5 C 1.37751 * 120.44311 * 179.97438 * 4 3 2
6 6 C 1.40807 * 120.10072 * 359.97438 * 5 4 3
7 7 C 1.41448 * 120.16738 * 180.02562 * 6 5 4
8 8 H 1.08004 * 119.99951 * 150.31603 * 7 6 5
9 9 C 1.39933 * 120.00158 * 330.32409 * 7 6 5
10 10 N 1.30833 * 119.99348 * 347.69549 * 9 7 6
11 11 Si 1.86800 * 120.00167 * 167.69800 * 9 7 6
12 12 H 1.48497 * 109.47104 * 359.97438 * 11 9 7
13 13 H 1.48493 * 109.46843 * 119.99984 * 11 9 7
14 14 H 1.48503 * 109.46810 * 239.99860 * 11 9 7
15 15 C 1.40436 * 119.66941 * 359.77535 * 6 5 4
16 16 C 1.39323 * 119.56214 * 0.48070 * 15 6 5
17 17 C 1.47211 * 120.05411 * 179.77697 * 16 15 6
18 18 O 1.21251 * 120.00481 * 175.38765 * 17 16 15
19 19 C 1.50706 * 120.00079 * 355.37310 * 17 16 15
20 20 C 1.52995 * 109.47436 * 180.02562 * 19 17 16
21 21 Cl 1.80299 * 109.47379 * 180.02562 * 20 19 17
22 22 H 1.09001 * 109.47291 * 60.00023 * 1 2 3
23 23 H 1.09006 * 109.46951 * 179.97438 * 1 2 3
24 24 H 1.08994 * 109.47364 * 300.00158 * 1 2 3
25 25 H 1.09001 * 109.47150 * 240.00145 * 2 1 3
26 26 H 1.09001 * 109.47291 * 119.99976 * 2 1 3
27 27 H 1.07997 * 119.77532 * 359.97088 * 4 3 2
28 28 H 1.08008 * 119.94989 * 180.02562 * 5 4 3
29 29 H 0.97004 * 119.99119 * 180.02562 * 10 9 7
30 30 H 1.07999 * 120.21951 * 180.25384 * 15 6 5
31 31 H 1.09002 * 109.47242 * 300.01233 * 19 17 16
32 32 H 1.08999 * 109.46237 * 60.00642 * 19 17 16
33 33 H 1.09002 * 109.47125 * 300.00935 * 20 19 17
34 34 H 1.09000 * 109.46808 * 60.00522 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.4882 1.9894 1.1754
5 6 2.9506 3.2869 1.1896
6 6 2.9627 4.0453 0.0033
7 6 3.4377 5.3776 0.0162
8 1 3.8963 5.7960 -0.8677
9 6 3.3136 6.1535 1.1740
10 7 2.5537 5.7442 2.1573
11 14 4.2328 7.7735 1.3157
12 1 5.0180 8.0071 0.0772
13 1 3.2600 8.8799 1.5018
14 1 5.1516 7.7210 2.4812
15 6 2.5057 3.4706 -1.1939
16 6 2.0360 2.1590 -1.1913
17 6 1.5498 1.5475 -2.4390
18 8 1.2198 0.3808 -2.4541
19 6 1.4619 2.3716 -3.6977
20 6 0.9301 1.5035 -4.8397
21 17 0.8257 2.4892 -6.3457
22 1 -0.3634 0.5138 -0.8900
23 1 -0.3633 -1.0277 -0.0005
24 1 -0.3634 0.5138 0.8899
25 1 1.8933 -0.5138 -0.8900
26 1 1.8933 -0.5138 0.8900
27 1 2.4815 1.4123 2.0882
28 1 3.3052 3.7229 2.1120
29 1 2.4675 6.2823 2.9598
30 1 2.5149 4.0429 -2.1097
31 1 0.7867 3.2118 -3.5355
32 1 2.4523 2.7462 -3.9564
33 1 1.6051 0.6631 -5.0019
34 1 -0.0603 1.1292 -4.5806
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000396045226.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:19:52
Heat of formation + Delta-G solvation = -51.643188 kcal
Electronic energy + Delta-G solvation = -17635.716518 eV
Core-core repulsion = 14751.242308 eV
Total energy + Delta-G solvation = -2884.474210 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 266.081 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-39.55771 -37.25849 -36.00286 -34.24802 -32.85995 -31.84828 -29.93260 -29.09255
-25.41149 -24.71498 -22.48485 -21.80687 -19.81439 -19.21115 -17.39528 -15.65306
-15.54030 -15.44743 -14.57987 -14.52514 -14.12449 -13.57433 -13.40679 -12.91323
-12.79613 -12.58288 -12.30685 -12.12560 -11.66633 -11.54471 -11.50440 -11.23630
-10.94657 -10.66293 -10.58100 -10.34816 -10.34430 -10.26773 -10.15624 -9.56855
-9.28242 -8.73274 -7.72940 -7.44766 -6.82872 -4.48968 1.70436 2.25463
2.65190 3.03119 3.04874 3.08010 3.38026 3.87411 4.50976 4.55281
4.83923 4.94104 5.41799 5.43241 5.72581 5.75382 5.78600 5.90511
6.01230 6.14452 6.15796 6.38181 6.50380 6.61782 6.70648 6.86687
6.88162 6.95727 7.15643 7.30361 7.55762 7.78033 7.85392 7.98826
8.18622 8.43784 8.73632 8.76605 10.13325
Molecular weight = 266.08amu
Principal moments of inertia in cm(-1)
A = 0.016344 B = 0.005795 C = 0.004407
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1712.716888 B = 4830.985445 C = 6351.641886
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.074 4.074
3 C -0.128 4.128
4 C -0.121 4.121
5 C -0.116 4.116
6 C 0.093 3.907
7 C -0.466 4.466
8 H 0.079 0.921
9 C 0.074 3.926
10 N -0.804 5.804
11 Si 0.910 3.090
12 H -0.261 1.261
13 H -0.274 1.274
14 H -0.273 1.273
15 C -0.169 4.169
16 C -0.153 4.153
17 C 0.403 3.597
18 O -0.470 6.470
19 C -0.178 4.178
20 C -0.016 4.016
21 Cl -0.195 7.195
22 H 0.051 0.949
23 H 0.041 0.959
24 H 0.043 0.957
25 H 0.081 0.919
26 H 0.045 0.955
27 H 0.095 0.905
28 H 0.122 0.878
29 H 0.280 0.720
30 H 0.104 0.896
31 H 0.108 0.892
32 H 0.107 0.893
33 H 0.096 0.904
34 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.526 -4.339 -6.240 7.752
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.111 4.111
3 C -0.129 4.129
4 C -0.139 4.139
5 C -0.136 4.136
6 C 0.091 3.909
7 C -0.496 4.496
8 H 0.097 0.903
9 C -0.142 4.142
10 N -0.431 5.431
11 Si 0.734 3.266
12 H -0.184 1.184
13 H -0.200 1.200
14 H -0.198 1.198
15 C -0.189 4.189
16 C -0.154 4.154
17 C 0.284 3.716
18 O -0.349 6.349
19 C -0.215 4.215
20 C -0.078 4.078
21 Cl -0.169 7.169
22 H 0.070 0.930
23 H 0.060 0.940
24 H 0.062 0.938
25 H 0.099 0.901
26 H 0.064 0.936
27 H 0.114 0.886
28 H 0.139 0.861
29 H 0.091 0.909
30 H 0.122 0.878
31 H 0.126 0.874
32 H 0.126 0.874
33 H 0.115 0.885
34 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -1.794 -4.783 -6.138 7.985
hybrid contribution 0.343 1.113 0.241 1.189
sum -1.451 -3.670 -5.897 7.095
Atomic orbital electron populations
1.21601 0.96298 0.99883 1.01050 1.20478 0.95269 0.93994 1.01349
1.19457 1.05500 0.95409 0.92567 1.20639 1.01579 0.95930 0.95783
1.21615 1.00356 0.91959 0.99637 1.17569 0.89679 0.93041 0.90637
1.19553 1.35271 0.96446 0.98364 0.90268 1.25863 0.93451 1.00023
0.94890 1.69773 1.29278 1.38090 1.05931 0.86228 0.79949 0.80979
0.79397 1.18432 1.19982 1.19773 1.21361 1.04944 0.93875 0.98755
1.19589 1.07114 0.95856 0.92839 1.22410 0.72922 0.87265 0.88960
1.90406 1.39264 1.18125 1.87112 1.22352 1.04951 1.00556 0.93671
1.24162 1.04961 0.94784 0.83935 1.98706 1.99117 1.75898 1.43150
0.92990 0.94039 0.93825 0.90057 0.93630 0.88637 0.86064 0.90867
0.87792 0.87381 0.87447 0.88504 0.88504
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.25 9.40 37.15 0.35 -1.90 16
2 C -0.07 -1.36 5.34 -27.89 -0.15 -1.51 16
3 C -0.13 -2.69 5.20 -103.88 -0.54 -3.23 16
4 C -0.12 -2.66 9.62 -39.74 -0.38 -3.05 16
5 C -0.12 -2.81 8.65 -38.79 -0.34 -3.15 16
6 C 0.09 2.28 5.53 -106.88 -0.59 1.69 16
7 C -0.47 -11.54 9.05 -37.73 -0.34 -11.89 16
8 H 0.08 1.88 7.88 -52.48 -0.41 1.47 16
9 C 0.07 1.77 5.21 -17.34 -0.09 1.68 16
10 N -0.80 -19.89 10.98 55.55 0.61 -19.28 16
11 Si 0.91 17.92 29.58 -169.99 -5.03 12.89 16
12 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16
13 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16
14 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16
15 C -0.17 -3.71 9.21 -38.35 -0.35 -4.06 16
16 C -0.15 -3.15 5.85 -105.13 -0.62 -3.77 16
17 C 0.40 7.02 6.71 -30.66 -0.21 6.82 16
18 O -0.47 -8.51 11.37 5.58 0.06 -8.44 16
19 C -0.18 -2.47 4.48 -27.88 -0.12 -2.59 16
20 C -0.02 -0.19 5.95 37.16 0.22 0.03 16
21 Cl -0.20 -2.43 29.15 -51.86 -1.51 -3.94 16
22 H 0.05 0.93 6.46 -51.93 -0.34 0.60 16
23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16
24 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16
25 H 0.08 1.53 5.89 -51.93 -0.31 1.23 16
26 H 0.04 0.78 7.97 -51.93 -0.41 0.37 16
27 H 0.10 1.91 8.01 -52.49 -0.42 1.49 16
28 H 0.12 3.04 6.34 -52.48 -0.33 2.71 16
29 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16
30 H 0.10 2.06 7.00 -52.49 -0.37 1.69 16
31 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16
32 H 0.11 1.42 7.94 -51.93 -0.41 1.01 16
33 H 0.10 1.14 8.10 -51.93 -0.42 0.72 16
34 H 0.10 1.15 8.10 -51.93 -0.42 0.73 16
LS Contribution 299.00 15.07 4.51 4.51
Total: -1.00 -25.41 299.00 -8.76 -34.18
By element:
Atomic # 1 Polarization: 9.28 SS G_CDS: -4.24 Total: 5.03 kcal
Atomic # 6 Polarization: -21.78 SS G_CDS: -3.16 Total: -24.94 kcal
Atomic # 7 Polarization: -19.89 SS G_CDS: 0.61 Total: -19.28 kcal
Atomic # 8 Polarization: -8.51 SS G_CDS: 0.06 Total: -8.44 kcal
Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal
Atomic # 17 Polarization: -2.43 SS G_CDS: -1.51 Total: -3.94 kcal
Total LS contribution 4.51 Total: 4.51 kcal
Total: -25.41 -8.76 -34.18 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000396045226.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.467 kcal
(2) G-P(sol) polarization free energy of solvation -25.413 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.880 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.176 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.643 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds