Wall clock time and date at job start Mon Mar 30 2020 07:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47154 * 2 1 4 4 C 1.38301 * 119.83536 * 101.55354 * 3 2 1 5 5 C 1.37751 * 120.44311 * 179.97438 * 4 3 2 6 6 C 1.40807 * 120.10072 * 359.97438 * 5 4 3 7 7 C 1.41448 * 120.16738 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99951 * 150.31603 * 7 6 5 9 9 C 1.39933 * 120.00158 * 330.32409 * 7 6 5 10 10 N 1.30833 * 119.99348 * 347.69549 * 9 7 6 11 11 Si 1.86800 * 120.00167 * 167.69800 * 9 7 6 12 12 H 1.48497 * 109.47104 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.46843 * 119.99984 * 11 9 7 14 14 H 1.48503 * 109.46810 * 239.99860 * 11 9 7 15 15 C 1.40436 * 119.66941 * 359.77535 * 6 5 4 16 16 C 1.39323 * 119.56214 * 0.48070 * 15 6 5 17 17 C 1.47211 * 120.05411 * 179.77697 * 16 15 6 18 18 O 1.21251 * 120.00481 * 175.38765 * 17 16 15 19 19 C 1.50706 * 120.00079 * 355.37310 * 17 16 15 20 20 C 1.52995 * 109.47436 * 180.02562 * 19 17 16 21 21 Cl 1.80299 * 109.47379 * 180.02562 * 20 19 17 22 22 H 1.09001 * 109.47291 * 60.00023 * 1 2 3 23 23 H 1.09006 * 109.46951 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47364 * 300.00158 * 1 2 3 25 25 H 1.09001 * 109.47150 * 240.00145 * 2 1 3 26 26 H 1.09001 * 109.47291 * 119.99976 * 2 1 3 27 27 H 1.07997 * 119.77532 * 359.97088 * 4 3 2 28 28 H 1.08008 * 119.94989 * 180.02562 * 5 4 3 29 29 H 0.97004 * 119.99119 * 180.02562 * 10 9 7 30 30 H 1.07999 * 120.21951 * 180.25384 * 15 6 5 31 31 H 1.09002 * 109.47242 * 300.01233 * 19 17 16 32 32 H 1.08999 * 109.46237 * 60.00642 * 19 17 16 33 33 H 1.09002 * 109.47125 * 300.00935 * 20 19 17 34 34 H 1.09000 * 109.46808 * 60.00522 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4882 1.9894 1.1754 5 6 2.9506 3.2869 1.1896 6 6 2.9627 4.0453 0.0033 7 6 3.4377 5.3776 0.0162 8 1 3.8963 5.7960 -0.8677 9 6 3.3136 6.1535 1.1740 10 7 2.5537 5.7442 2.1573 11 14 4.2328 7.7735 1.3157 12 1 5.0180 8.0071 0.0772 13 1 3.2600 8.8799 1.5018 14 1 5.1516 7.7210 2.4812 15 6 2.5057 3.4706 -1.1939 16 6 2.0360 2.1590 -1.1913 17 6 1.5498 1.5475 -2.4390 18 8 1.2198 0.3808 -2.4541 19 6 1.4619 2.3716 -3.6977 20 6 0.9301 1.5035 -4.8397 21 17 0.8257 2.4892 -6.3457 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.4815 1.4123 2.0882 28 1 3.3052 3.7229 2.1120 29 1 2.4675 6.2823 2.9598 30 1 2.5149 4.0429 -2.1097 31 1 0.7867 3.2118 -3.5355 32 1 2.4523 2.7462 -3.9564 33 1 1.6051 0.6631 -5.0019 34 1 -0.0603 1.1292 -4.5806 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396045226.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:52 Heat of formation + Delta-G solvation = -51.643188 kcal Electronic energy + Delta-G solvation = -17635.716518 eV Core-core repulsion = 14751.242308 eV Total energy + Delta-G solvation = -2884.474210 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.55771 -37.25849 -36.00286 -34.24802 -32.85995 -31.84828 -29.93260 -29.09255 -25.41149 -24.71498 -22.48485 -21.80687 -19.81439 -19.21115 -17.39528 -15.65306 -15.54030 -15.44743 -14.57987 -14.52514 -14.12449 -13.57433 -13.40679 -12.91323 -12.79613 -12.58288 -12.30685 -12.12560 -11.66633 -11.54471 -11.50440 -11.23630 -10.94657 -10.66293 -10.58100 -10.34816 -10.34430 -10.26773 -10.15624 -9.56855 -9.28242 -8.73274 -7.72940 -7.44766 -6.82872 -4.48968 1.70436 2.25463 2.65190 3.03119 3.04874 3.08010 3.38026 3.87411 4.50976 4.55281 4.83923 4.94104 5.41799 5.43241 5.72581 5.75382 5.78600 5.90511 6.01230 6.14452 6.15796 6.38181 6.50380 6.61782 6.70648 6.86687 6.88162 6.95727 7.15643 7.30361 7.55762 7.78033 7.85392 7.98826 8.18622 8.43784 8.73632 8.76605 10.13325 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016344 B = 0.005795 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.716888 B = 4830.985445 C = 6351.641886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.074 4.074 3 C -0.128 4.128 4 C -0.121 4.121 5 C -0.116 4.116 6 C 0.093 3.907 7 C -0.466 4.466 8 H 0.079 0.921 9 C 0.074 3.926 10 N -0.804 5.804 11 Si 0.910 3.090 12 H -0.261 1.261 13 H -0.274 1.274 14 H -0.273 1.273 15 C -0.169 4.169 16 C -0.153 4.153 17 C 0.403 3.597 18 O -0.470 6.470 19 C -0.178 4.178 20 C -0.016 4.016 21 Cl -0.195 7.195 22 H 0.051 0.949 23 H 0.041 0.959 24 H 0.043 0.957 25 H 0.081 0.919 26 H 0.045 0.955 27 H 0.095 0.905 28 H 0.122 0.878 29 H 0.280 0.720 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.526 -4.339 -6.240 7.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.111 4.111 3 C -0.129 4.129 4 C -0.139 4.139 5 C -0.136 4.136 6 C 0.091 3.909 7 C -0.496 4.496 8 H 0.097 0.903 9 C -0.142 4.142 10 N -0.431 5.431 11 Si 0.734 3.266 12 H -0.184 1.184 13 H -0.200 1.200 14 H -0.198 1.198 15 C -0.189 4.189 16 C -0.154 4.154 17 C 0.284 3.716 18 O -0.349 6.349 19 C -0.215 4.215 20 C -0.078 4.078 21 Cl -0.169 7.169 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.099 0.901 26 H 0.064 0.936 27 H 0.114 0.886 28 H 0.139 0.861 29 H 0.091 0.909 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.115 0.885 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.794 -4.783 -6.138 7.985 hybrid contribution 0.343 1.113 0.241 1.189 sum -1.451 -3.670 -5.897 7.095 Atomic orbital electron populations 1.21601 0.96298 0.99883 1.01050 1.20478 0.95269 0.93994 1.01349 1.19457 1.05500 0.95409 0.92567 1.20639 1.01579 0.95930 0.95783 1.21615 1.00356 0.91959 0.99637 1.17569 0.89679 0.93041 0.90637 1.19553 1.35271 0.96446 0.98364 0.90268 1.25863 0.93451 1.00023 0.94890 1.69773 1.29278 1.38090 1.05931 0.86228 0.79949 0.80979 0.79397 1.18432 1.19982 1.19773 1.21361 1.04944 0.93875 0.98755 1.19589 1.07114 0.95856 0.92839 1.22410 0.72922 0.87265 0.88960 1.90406 1.39264 1.18125 1.87112 1.22352 1.04951 1.00556 0.93671 1.24162 1.04961 0.94784 0.83935 1.98706 1.99117 1.75898 1.43150 0.92990 0.94039 0.93825 0.90057 0.93630 0.88637 0.86064 0.90867 0.87792 0.87381 0.87447 0.88504 0.88504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 9.40 37.15 0.35 -1.90 16 2 C -0.07 -1.36 5.34 -27.89 -0.15 -1.51 16 3 C -0.13 -2.69 5.20 -103.88 -0.54 -3.23 16 4 C -0.12 -2.66 9.62 -39.74 -0.38 -3.05 16 5 C -0.12 -2.81 8.65 -38.79 -0.34 -3.15 16 6 C 0.09 2.28 5.53 -106.88 -0.59 1.69 16 7 C -0.47 -11.54 9.05 -37.73 -0.34 -11.89 16 8 H 0.08 1.88 7.88 -52.48 -0.41 1.47 16 9 C 0.07 1.77 5.21 -17.34 -0.09 1.68 16 10 N -0.80 -19.89 10.98 55.55 0.61 -19.28 16 11 Si 0.91 17.92 29.58 -169.99 -5.03 12.89 16 12 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 13 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 14 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 15 C -0.17 -3.71 9.21 -38.35 -0.35 -4.06 16 16 C -0.15 -3.15 5.85 -105.13 -0.62 -3.77 16 17 C 0.40 7.02 6.71 -30.66 -0.21 6.82 16 18 O -0.47 -8.51 11.37 5.58 0.06 -8.44 16 19 C -0.18 -2.47 4.48 -27.88 -0.12 -2.59 16 20 C -0.02 -0.19 5.95 37.16 0.22 0.03 16 21 Cl -0.20 -2.43 29.15 -51.86 -1.51 -3.94 16 22 H 0.05 0.93 6.46 -51.93 -0.34 0.60 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.08 1.53 5.89 -51.93 -0.31 1.23 16 26 H 0.04 0.78 7.97 -51.93 -0.41 0.37 16 27 H 0.10 1.91 8.01 -52.49 -0.42 1.49 16 28 H 0.12 3.04 6.34 -52.48 -0.33 2.71 16 29 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 30 H 0.10 2.06 7.00 -52.49 -0.37 1.69 16 31 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.11 1.42 7.94 -51.93 -0.41 1.01 16 33 H 0.10 1.14 8.10 -51.93 -0.42 0.72 16 34 H 0.10 1.15 8.10 -51.93 -0.42 0.73 16 LS Contribution 299.00 15.07 4.51 4.51 Total: -1.00 -25.41 299.00 -8.76 -34.18 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -4.24 Total: 5.03 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -3.16 Total: -24.94 kcal Atomic # 7 Polarization: -19.89 SS G_CDS: 0.61 Total: -19.28 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.06 Total: -8.44 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Atomic # 17 Polarization: -2.43 SS G_CDS: -1.51 Total: -3.94 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -25.41 -8.76 -34.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396045226.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.467 kcal (2) G-P(sol) polarization free energy of solvation -25.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds