Wall clock time and date at job start Mon Mar 30 2020 07:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47154 * 2 1 4 4 C 1.38301 * 119.83536 * 101.55354 * 3 2 1 5 5 C 1.37751 * 120.44311 * 179.97438 * 4 3 2 6 6 C 1.40807 * 120.10072 * 359.97438 * 5 4 3 7 7 C 1.41448 * 120.16738 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99951 * 150.31603 * 7 6 5 9 9 C 1.39933 * 120.00158 * 330.32409 * 7 6 5 10 10 N 1.30833 * 119.99348 * 347.69549 * 9 7 6 11 11 Si 1.86800 * 120.00167 * 167.69800 * 9 7 6 12 12 H 1.48497 * 109.47104 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.46843 * 119.99984 * 11 9 7 14 14 H 1.48503 * 109.46810 * 239.99860 * 11 9 7 15 15 C 1.40436 * 119.66941 * 359.77535 * 6 5 4 16 16 C 1.39323 * 119.56214 * 0.48070 * 15 6 5 17 17 C 1.47211 * 120.05411 * 179.77697 * 16 15 6 18 18 O 1.21251 * 120.00481 * 175.38765 * 17 16 15 19 19 C 1.50706 * 120.00079 * 355.37310 * 17 16 15 20 20 C 1.52995 * 109.47436 * 180.02562 * 19 17 16 21 21 Cl 1.80299 * 109.47379 * 180.02562 * 20 19 17 22 22 H 1.09001 * 109.47291 * 60.00023 * 1 2 3 23 23 H 1.09006 * 109.46951 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47364 * 300.00158 * 1 2 3 25 25 H 1.09001 * 109.47150 * 240.00145 * 2 1 3 26 26 H 1.09001 * 109.47291 * 119.99976 * 2 1 3 27 27 H 1.07997 * 119.77532 * 359.97088 * 4 3 2 28 28 H 1.08008 * 119.94989 * 180.02562 * 5 4 3 29 29 H 0.97004 * 119.99119 * 180.02562 * 10 9 7 30 30 H 1.07999 * 120.21951 * 180.25384 * 15 6 5 31 31 H 1.09002 * 109.47242 * 300.01233 * 19 17 16 32 32 H 1.08999 * 109.46237 * 60.00642 * 19 17 16 33 33 H 1.09002 * 109.47125 * 300.00935 * 20 19 17 34 34 H 1.09000 * 109.46808 * 60.00522 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4882 1.9894 1.1754 5 6 2.9506 3.2869 1.1896 6 6 2.9627 4.0453 0.0033 7 6 3.4377 5.3776 0.0162 8 1 3.8963 5.7960 -0.8677 9 6 3.3136 6.1535 1.1740 10 7 2.5537 5.7442 2.1573 11 14 4.2328 7.7735 1.3157 12 1 5.0180 8.0071 0.0772 13 1 3.2600 8.8799 1.5018 14 1 5.1516 7.7210 2.4812 15 6 2.5057 3.4706 -1.1939 16 6 2.0360 2.1590 -1.1913 17 6 1.5498 1.5475 -2.4390 18 8 1.2198 0.3808 -2.4541 19 6 1.4619 2.3716 -3.6977 20 6 0.9301 1.5035 -4.8397 21 17 0.8257 2.4892 -6.3457 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.4815 1.4123 2.0882 28 1 3.3052 3.7229 2.1120 29 1 2.4675 6.2823 2.9598 30 1 2.5149 4.0429 -2.1097 31 1 0.7867 3.2118 -3.5355 32 1 2.4523 2.7462 -3.9564 33 1 1.6051 0.6631 -5.0019 34 1 -0.0603 1.1292 -4.5806 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396045226.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:50 Heat of formation + Delta-G solvation = -61.649934 kcal Electronic energy + Delta-G solvation = -17636.150443 eV Core-core repulsion = 14751.242308 eV Total energy + Delta-G solvation = -2884.908135 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.04869 -38.88824 -37.01624 -35.92683 -34.34121 -33.22568 -31.53688 -30.75902 -27.11479 -26.05362 -23.92657 -23.44564 -21.43552 -20.71452 -19.05097 -17.22070 -17.07809 -16.70455 -16.19365 -16.05400 -15.53644 -14.97524 -14.81277 -14.41379 -14.30340 -13.88829 -13.84893 -13.44699 -13.20260 -13.15013 -12.83544 -12.68244 -12.57616 -12.30343 -11.92745 -11.90971 -11.75243 -11.51492 -11.31015 -11.26382 -11.03189 -10.19742 -9.46370 -9.21427 -8.59429 -6.34206 0.12991 0.93543 1.25789 1.41483 1.45695 1.55199 1.79714 2.23254 2.76122 3.25322 3.64049 3.70698 3.95255 4.20165 4.24650 4.39157 4.51279 4.57354 4.69512 4.73362 4.85922 4.87753 4.98060 5.04170 5.09570 5.19137 5.29146 5.40728 5.43550 5.58088 5.84537 6.04886 6.08622 6.23809 6.62842 6.69459 6.93710 6.95542 8.38766 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016344 B = 0.005795 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.716888 B = 4830.985445 C = 6351.641886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.071 4.071 3 C -0.135 4.135 4 C -0.126 4.126 5 C -0.141 4.141 6 C 0.062 3.938 7 C -0.498 4.498 8 H 0.080 0.920 9 C 0.034 3.966 10 N -0.839 5.839 11 Si 0.979 3.021 12 H -0.257 1.257 13 H -0.270 1.270 14 H -0.269 1.269 15 C -0.170 4.170 16 C -0.161 4.161 17 C 0.408 3.592 18 O -0.472 6.472 19 C -0.170 4.170 20 C -0.009 4.009 21 Cl -0.194 7.194 22 H 0.041 0.959 23 H 0.065 0.935 24 H 0.039 0.961 25 H 0.081 0.919 26 H 0.058 0.942 27 H 0.111 0.889 28 H 0.103 0.897 29 H 0.285 0.715 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.817 -4.789 -7.469 9.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.108 4.108 3 C -0.136 4.136 4 C -0.145 4.145 5 C -0.161 4.161 6 C 0.060 3.940 7 C -0.528 4.528 8 H 0.098 0.902 9 C -0.179 4.179 10 N -0.466 5.466 11 Si 0.801 3.199 12 H -0.180 1.180 13 H -0.195 1.195 14 H -0.193 1.193 15 C -0.189 4.189 16 C -0.162 4.162 17 C 0.289 3.711 18 O -0.351 6.351 19 C -0.207 4.207 20 C -0.071 4.071 21 Cl -0.167 7.167 22 H 0.060 0.940 23 H 0.084 0.916 24 H 0.058 0.942 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.129 0.871 28 H 0.121 0.879 29 H 0.096 0.904 30 H 0.140 0.860 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.122 0.878 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.091 -5.251 -7.378 9.294 hybrid contribution 0.384 1.114 0.581 1.314 sum -1.707 -4.138 -6.797 8.138 Atomic orbital electron populations 1.21551 0.95164 1.01281 1.00350 1.20497 0.96144 0.92169 1.01981 1.19894 1.04517 0.96836 0.92365 1.20844 1.01183 0.95358 0.97068 1.21546 1.02308 0.93097 0.99138 1.17913 0.90742 0.93575 0.91772 1.19799 1.36690 0.97101 0.99197 0.90169 1.26654 0.93770 1.03240 0.94248 1.69843 1.30522 1.39637 1.06591 0.85188 0.78615 0.76737 0.79381 1.18009 1.19469 1.19344 1.21574 1.04185 0.94584 0.98583 1.20019 1.06188 0.95480 0.94466 1.22440 0.72306 0.87354 0.89013 1.90402 1.39082 1.18381 1.87199 1.22274 1.05824 1.00285 0.92325 1.24095 1.05396 0.94409 0.83240 1.98713 1.99117 1.75974 1.42932 0.93983 0.91612 0.94208 0.90088 0.92335 0.87095 0.87948 0.90403 0.86009 0.86803 0.86481 0.87757 0.87940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 9.40 71.98 0.68 -3.39 16 2 C -0.07 -2.49 5.34 29.85 0.16 -2.33 16 3 C -0.13 -5.58 5.20 -19.39 -0.10 -5.68 16 4 C -0.13 -5.62 9.62 22.17 0.21 -5.40 16 5 C -0.14 -7.07 8.65 22.78 0.20 -6.87 16 6 C 0.06 3.12 5.53 -21.32 -0.12 3.00 16 7 C -0.50 -25.22 9.05 23.47 0.21 -25.01 16 8 H 0.08 3.88 7.88 -2.91 -0.02 3.86 16 9 C 0.03 1.65 5.21 85.25 0.44 2.09 16 10 N -0.84 -42.68 10.98 21.82 0.24 -42.44 16 11 Si 0.98 37.06 29.58 68.60 2.03 39.08 16 12 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 13 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 14 H -0.27 -9.88 7.11 99.48 0.71 -9.18 16 15 C -0.17 -7.41 9.21 23.07 0.21 -7.20 16 16 C -0.16 -6.47 5.85 -20.20 -0.12 -6.59 16 17 C 0.41 13.41 6.71 28.05 0.19 13.59 16 18 O -0.47 -15.95 11.37 -2.94 -0.03 -15.99 16 19 C -0.17 -4.31 4.48 29.85 0.13 -4.18 16 20 C -0.01 -0.19 5.95 71.98 0.43 0.24 16 21 Cl -0.19 -4.37 29.15 -2.72 -0.08 -4.45 16 22 H 0.04 1.42 6.46 -2.39 -0.02 1.41 16 23 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 24 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.08 2.87 5.89 -2.39 -0.01 2.86 16 26 H 0.06 1.89 7.97 -2.39 -0.02 1.87 16 27 H 0.11 4.43 8.01 -2.91 -0.02 4.41 16 28 H 0.10 5.41 6.34 -2.91 -0.02 5.39 16 29 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16 30 H 0.12 4.73 7.00 -2.91 -0.02 4.71 16 31 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.12 2.80 7.94 -2.39 -0.02 2.79 16 33 H 0.10 2.15 8.10 -2.39 -0.02 2.13 16 34 H 0.10 2.15 8.10 -2.39 -0.02 2.13 16 Total: -1.00 -54.52 299.00 5.79 -48.73 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 1.10 Total: 22.78 kcal Atomic # 6 Polarization: -50.25 SS G_CDS: 2.53 Total: -47.72 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.24 Total: -42.44 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.03 Total: -15.99 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 2.03 Total: 39.08 kcal Atomic # 17 Polarization: -4.37 SS G_CDS: -0.08 Total: -4.45 kcal Total: -54.52 5.79 -48.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396045226.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.920 kcal (2) G-P(sol) polarization free energy of solvation -54.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds