Wall clock time and date at job start Mon Mar 30 2020 07:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47096 * 2 1 4 4 C 1.38663 * 119.74854 * 270.01812 * 3 2 1 5 5 C 1.37590 * 120.24699 * 179.73653 * 4 3 2 6 6 C 1.40737 * 119.74568 * 0.54255 * 5 4 3 7 7 C 1.41401 * 120.24090 * 179.71384 * 6 5 4 8 8 H 1.08003 * 119.99476 * 154.35583 * 7 6 5 9 9 C 1.39937 * 120.00298 * 334.35622 * 7 6 5 10 10 N 1.30822 * 120.00325 * 334.67536 * 9 7 6 11 11 Si 1.86800 * 120.00249 * 154.67636 * 9 7 6 12 12 H 1.48494 * 109.47561 * 179.97438 * 11 9 7 13 13 H 1.48502 * 109.46862 * 300.00172 * 11 9 7 14 14 H 1.48509 * 109.47077 * 59.99551 * 11 9 7 15 15 C 1.40694 * 119.50944 * 359.44104 * 6 5 4 16 16 C 1.50699 * 120.12330 * 180.29622 * 15 6 5 17 17 C 1.50708 * 109.47109 * 85.00493 * 16 15 6 18 18 O 1.20759 * 119.99623 * 359.97438 * 17 16 15 19 19 C 1.50695 * 119.99989 * 179.97438 * 17 16 15 20 20 Cl 1.80301 * 109.46927 * 179.97438 * 19 17 16 21 21 C 1.37627 * 119.74659 * 0.27880 * 15 6 5 22 22 H 1.09007 * 109.46832 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47085 * 299.99756 * 1 2 3 24 24 H 1.08998 * 109.46832 * 60.00561 * 1 2 3 25 25 H 1.09007 * 109.47063 * 239.99595 * 2 1 3 26 26 H 1.09003 * 109.46955 * 120.00354 * 2 1 3 27 27 H 1.08000 * 119.87544 * 0.02562 * 4 3 2 28 28 H 1.08005 * 120.12571 * 180.25558 * 5 4 3 29 29 H 0.97005 * 119.99423 * 354.19309 * 10 9 7 30 30 H 1.09006 * 109.47056 * 204.99970 * 16 15 6 31 31 H 1.08996 * 109.47698 * 325.00457 * 16 15 6 32 32 H 1.08993 * 109.47548 * 299.99807 * 19 17 16 33 33 H 1.09002 * 109.47140 * 59.99955 * 19 17 16 34 34 H 1.08002 * 119.87657 * 180.02562 * 21 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2613 2.0696 -1.2039 5 6 2.7148 3.3686 -1.2159 6 6 2.9571 4.0348 -0.0001 7 6 3.4289 5.3678 -0.0002 8 1 3.2315 6.0105 0.8450 9 6 4.1517 5.8541 -1.0954 10 7 4.8131 5.0261 -1.8624 11 14 4.1721 7.6856 -1.4621 12 1 5.0041 7.9404 -2.6654 13 1 2.7855 8.1563 -1.7096 14 1 4.7431 8.4164 -0.3022 15 6 2.7208 3.3667 1.2154 16 6 2.9692 4.0692 2.5253 17 6 1.7533 4.8766 2.9007 18 8 0.7853 4.8815 2.1788 19 6 1.7456 5.6779 4.1770 20 17 0.1642 6.5279 4.3434 21 6 2.2617 2.0693 1.2034 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.0786 1.5549 -2.1356 28 1 2.8885 3.8734 -2.1547 29 1 4.8725 4.0874 -1.6251 30 1 3.1686 3.3305 3.3016 31 1 3.8286 4.7320 2.4249 32 1 1.8907 5.0102 5.0261 33 1 2.5511 6.4118 4.1501 34 1 2.0792 1.5546 2.1352 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396045241.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:21 Heat of formation + Delta-G solvation = -68.963122 kcal Electronic energy + Delta-G solvation = -17829.030777 eV Core-core repulsion = 14943.805518 eV Total energy + Delta-G solvation = -2885.225258 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.75017 -39.42673 -36.87229 -36.33266 -34.47143 -32.94537 -30.90991 -30.35610 -27.92203 -26.69134 -24.00765 -22.59226 -21.52633 -20.41945 -19.48753 -17.01511 -16.94866 -16.64259 -16.33200 -16.00303 -15.69850 -15.32136 -14.71201 -14.35080 -14.18170 -14.08581 -13.88691 -13.57380 -13.41947 -13.11504 -12.79624 -12.65578 -12.23638 -12.04115 -11.89389 -11.84131 -11.81655 -11.45198 -11.36713 -11.14411 -10.80049 -10.56848 -9.40272 -9.27921 -9.01145 -6.35204 0.89804 0.99147 1.09281 1.23122 1.47781 1.61887 1.75882 2.31671 2.69317 3.02046 3.62858 4.06264 4.14078 4.20812 4.26362 4.32033 4.43605 4.54248 4.59150 4.65462 4.71955 4.89509 4.97387 5.04205 5.14503 5.23186 5.34413 5.42262 5.51912 5.85142 5.85904 5.99680 6.16599 6.31676 6.48506 6.66376 6.87149 7.05000 8.10651 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.010464 B = 0.009654 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.099698 B = 2899.522791 C = 5128.228713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.059 4.059 3 C -0.210 4.210 4 C -0.094 4.094 5 C -0.243 4.243 6 C 0.082 3.918 7 C -0.544 4.544 8 H 0.073 0.927 9 C 0.004 3.996 10 N -0.823 5.823 11 Si 1.103 2.897 12 H -0.273 1.273 13 H -0.277 1.277 14 H -0.248 1.248 15 C -0.194 4.194 16 C -0.099 4.099 17 C 0.342 3.658 18 O -0.466 6.466 19 C -0.080 4.080 20 Cl -0.183 7.183 21 C -0.078 4.078 22 H 0.073 0.927 23 H 0.043 0.957 24 H 0.037 0.963 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.283 0.717 30 H 0.125 0.875 31 H 0.104 0.896 32 H 0.163 0.837 33 H 0.149 0.851 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.619 -1.690 11.148 11.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.096 4.096 3 C -0.211 4.211 4 C -0.113 4.113 5 C -0.262 4.262 6 C 0.079 3.921 7 C -0.573 4.573 8 H 0.091 0.909 9 C -0.212 4.212 10 N -0.447 5.447 11 Si 0.921 3.079 12 H -0.198 1.198 13 H -0.202 1.202 14 H -0.172 1.172 15 C -0.195 4.195 16 C -0.136 4.136 17 C 0.217 3.783 18 O -0.339 6.339 19 C -0.143 4.143 20 Cl -0.156 7.156 21 C -0.096 4.096 22 H 0.092 0.908 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.118 0.882 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.143 0.857 31 H 0.122 0.878 32 H 0.180 0.820 33 H 0.167 0.833 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.669 -0.536 9.673 9.830 hybrid contribution -0.573 -1.062 0.505 1.308 sum -2.242 -1.599 10.178 10.544 Atomic orbital electron populations 1.21714 0.95385 1.01587 1.00855 1.20233 0.95645 0.91898 1.01865 1.19587 1.11043 0.98034 0.92445 1.20717 0.99026 0.94362 0.97164 1.21123 1.11161 0.96772 0.97166 1.17755 0.89919 0.92898 0.91481 1.20560 1.33315 0.97379 1.06048 0.90904 1.28151 0.90616 1.10792 0.91607 1.70557 1.29192 1.07785 1.37160 0.83183 0.77760 0.68674 0.78254 1.19776 1.20207 1.17224 1.19616 1.11282 0.94836 0.93788 1.20751 0.97125 0.99862 0.95817 1.25232 0.88322 0.79048 0.85704 1.90457 1.36426 1.56116 1.50940 1.25200 0.88133 1.00499 1.00419 1.98726 1.37829 1.80915 1.98133 1.20666 0.97901 0.94130 0.96906 0.90772 0.93820 0.94378 0.92054 0.91015 0.88209 0.90355 0.90463 0.85738 0.87756 0.81959 0.83283 0.86439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 9.89 71.98 0.71 -3.37 16 2 C -0.06 -1.91 6.05 29.85 0.18 -1.73 16 3 C -0.21 -8.82 5.16 -19.67 -0.10 -8.92 16 4 C -0.09 -4.46 9.67 22.22 0.21 -4.24 16 5 C -0.24 -13.01 7.95 22.73 0.18 -12.83 16 6 C 0.08 4.30 5.30 -21.29 -0.11 4.18 16 7 C -0.54 -28.47 8.09 23.46 0.19 -28.28 16 8 H 0.07 3.63 6.72 -2.91 -0.02 3.61 16 9 C 0.00 0.22 4.94 85.25 0.42 0.64 16 10 N -0.82 -44.90 12.32 21.82 0.27 -44.64 16 11 Si 1.10 44.11 30.00 68.60 2.06 46.16 16 12 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 13 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 14 H -0.25 -8.75 7.11 99.48 0.71 -8.05 16 15 C -0.19 -8.67 4.43 -19.41 -0.09 -8.75 16 16 C -0.10 -3.30 5.12 29.10 0.15 -3.15 16 17 C 0.34 11.35 6.84 29.10 0.20 11.55 16 18 O -0.47 -20.52 15.69 -1.45 -0.02 -20.55 16 19 C -0.08 -1.75 7.07 71.23 0.50 -1.25 16 20 Cl -0.18 -5.10 28.37 -2.72 -0.08 -5.18 16 21 C -0.08 -3.24 9.30 22.22 0.21 -3.04 16 22 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 23 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.06 1.87 8.08 -2.38 -0.02 1.85 16 26 H 0.07 2.04 8.08 -2.39 -0.02 2.02 16 27 H 0.10 4.30 8.06 -2.91 -0.02 4.28 16 28 H 0.08 4.48 6.50 -2.91 -0.02 4.46 16 29 H 0.28 16.05 6.69 -92.70 -0.62 15.43 16 30 H 0.12 3.08 8.05 -2.38 -0.02 3.06 16 31 H 0.10 3.49 7.05 -2.39 -0.02 3.48 16 32 H 0.16 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.15 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.12 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -66.89 305.51 6.13 -60.76 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 1.24 Total: 22.62 kcal Atomic # 6 Polarization: -61.84 SS G_CDS: 2.66 Total: -59.18 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.27 Total: -44.64 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.02 Total: -20.55 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.06 Total: 46.16 kcal Atomic # 17 Polarization: -5.10 SS G_CDS: -0.08 Total: -5.18 kcal Total: -66.89 6.13 -60.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396045241.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.202 kcal (2) G-P(sol) polarization free energy of solvation -66.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds