Wall clock time and date at job start Mon Mar 30 2020 06:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80997 * 1 3 3 C 1.76198 * 99.99920 * 2 1 4 4 C 1.38915 * 120.31137 * 359.97438 * 3 2 1 5 5 C 1.38047 * 120.01778 * 180.02562 * 4 3 2 6 6 C 1.50704 * 119.67934 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.46694 * 89.99899 * 6 5 4 8 8 C 1.50704 * 109.46646 * 180.02562 * 7 6 5 9 9 O 1.20828 * 120.00026 * 359.97438 * 8 7 6 10 10 O 1.34229 * 119.99794 * 180.02562 * 8 7 6 11 11 C 1.38975 * 120.64724 * 359.95776 * 5 4 3 12 12 C 1.36408 * 120.62275 * 359.77643 * 11 5 4 13 13 C 1.40752 * 119.95758 * 0.50280 * 12 11 5 14 14 C 1.40969 * 120.31593 * 179.75872 * 13 12 11 15 15 H 1.07994 * 120.00277 * 205.58572 * 14 13 12 16 16 C 1.39901 * 119.99445 * 25.58019 * 14 13 12 17 17 N 1.30893 * 120.00695 * 16.96278 * 16 14 13 18 18 Si 1.86804 * 119.99574 * 196.96664 * 16 14 13 19 19 H 1.48507 * 109.46825 * 265.18947 * 18 16 14 20 20 H 1.48495 * 109.47293 * 25.18978 * 18 16 14 21 21 H 1.48506 * 109.47179 * 145.18989 * 18 16 14 22 22 H 1.09006 * 109.47159 * 300.00112 * 1 2 3 23 23 H 1.09003 * 109.47063 * 59.99997 * 1 2 3 24 24 H 1.09000 * 109.47604 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.99016 * 0.02562 * 4 3 2 26 26 H 1.08993 * 109.47266 * 209.99812 * 6 5 4 27 27 H 1.08997 * 109.46751 * 330.00292 * 6 5 4 28 28 H 1.09000 * 109.46982 * 299.99671 * 7 6 5 29 29 H 1.08997 * 109.47200 * 60.00669 * 7 6 5 30 30 H 0.96700 * 116.99787 * 179.97438 * 10 8 7 31 31 H 1.07991 * 119.68951 * 180.02562 * 11 5 4 32 32 H 1.08000 * 120.02348 * 180.23064 * 12 11 5 33 33 H 0.96997 * 120.00682 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 1.0566 2.6339 -0.0005 5 6 1.3033 3.9922 -0.0011 6 6 0.1483 4.9603 -0.0022 7 6 -0.2433 5.2886 1.4400 8 6 -1.3986 6.2562 1.4388 9 8 -1.8610 6.6439 0.3919 10 8 -1.9134 6.6882 2.6007 11 6 2.6062 4.4756 -0.0002 12 6 3.6660 3.6167 0.0058 13 6 3.4443 2.2268 0.0004 14 6 4.5339 1.3324 0.0014 15 1 4.4176 0.3391 -0.4061 16 6 5.7660 1.7317 0.5303 17 7 5.8344 2.7800 1.3111 18 14 7.3137 0.7686 0.1221 19 1 7.5736 -0.2275 1.1925 20 1 7.1327 0.0669 -1.1739 21 1 8.4654 1.7011 0.0235 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 0.0398 2.2699 -0.0005 26 1 0.4419 5.8755 -0.5163 27 1 -0.7015 4.5113 -0.5163 28 1 -0.5369 4.3733 1.9540 29 1 0.6065 5.7375 1.9540 30 1 -2.6534 7.3085 2.5494 31 1 2.7814 5.5412 -0.0002 32 1 4.6746 4.0029 0.0102 33 1 6.6885 3.0566 1.6781 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396045436.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:53 Heat of formation + Delta-G solvation = -93.829074 kcal Electronic energy + Delta-G solvation = -17302.827179 eV Core-core repulsion = 14418.567358 eV Total energy + Delta-G solvation = -2884.259821 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.14292 -37.85849 -36.12446 -34.45016 -32.67250 -30.11346 -29.59379 -27.96404 -26.20798 -23.59082 -21.35721 -21.08474 -19.87975 -18.02384 -17.50146 -16.46965 -16.01741 -15.64541 -15.19987 -14.41451 -14.18475 -13.49212 -13.27382 -13.17226 -13.08762 -12.83735 -12.58604 -12.07103 -11.68351 -11.54138 -11.47722 -11.19982 -11.03719 -10.86289 -10.75056 -10.44117 -10.42913 -10.14430 -9.65910 -9.26390 -9.02669 -8.41286 -7.48106 -6.92427 -6.36690 -4.42050 2.30494 2.59276 2.72218 2.80893 3.03301 3.03984 3.10895 3.27507 3.60967 3.86880 4.47426 5.17515 5.34020 5.42160 5.59519 5.61128 5.63785 5.89946 5.99176 6.10004 6.14485 6.26342 6.42322 6.46260 6.59702 6.92797 7.06071 7.18124 7.40862 7.58325 7.83695 7.95035 7.97701 8.10800 8.47406 8.72083 8.79142 10.04809 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021325 B = 0.005317 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.684786 B = 5265.182204 C = 6246.893988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 S -0.128 6.128 3 C -0.202 4.202 4 C -0.084 4.084 5 C -0.206 4.206 6 C -0.040 4.040 7 C -0.108 4.108 8 C 0.476 3.524 9 O -0.522 6.522 10 O -0.522 6.522 11 C -0.095 4.095 12 C -0.149 4.149 13 C 0.136 3.864 14 C -0.446 4.446 15 H 0.086 0.914 16 C 0.078 3.922 17 N -0.786 5.786 18 Si 0.909 3.091 19 H -0.268 1.268 20 H -0.258 1.258 21 H -0.274 1.274 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.403 0.597 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.393 2.337 1.539 7.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 S 0.111 5.889 3 C -0.315 4.315 4 C -0.107 4.107 5 C -0.209 4.209 6 C -0.077 4.077 7 C -0.146 4.146 8 C 0.320 3.680 9 O -0.410 6.410 10 O -0.333 6.333 11 C -0.114 4.114 12 C -0.170 4.170 13 C 0.129 3.871 14 C -0.475 4.475 15 H 0.104 0.896 16 C -0.141 4.141 17 N -0.410 5.410 18 Si 0.733 3.267 19 H -0.193 1.193 20 H -0.182 1.182 21 H -0.199 1.199 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.105 0.895 25 H 0.112 0.888 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.261 0.739 31 H 0.108 0.892 32 H 0.139 0.861 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.319 1.246 1.422 6.596 hybrid contribution -0.660 1.236 -0.005 1.401 sum -6.979 2.482 1.416 7.542 Atomic orbital electron populations 1.23522 0.99297 1.04847 1.04396 1.85178 1.01835 1.07235 1.94665 1.21493 0.96406 0.93031 1.20575 1.20433 0.95841 0.92711 1.01727 1.18770 0.93058 0.92369 1.16668 1.20038 0.96863 0.98641 0.92200 1.21617 0.93687 0.97258 1.02005 1.24081 0.83547 0.79814 0.80572 1.90692 1.60652 1.56323 1.33336 1.84606 1.50826 1.61216 1.36667 1.20333 0.92452 0.97580 1.01075 1.21002 0.98127 0.92727 1.05143 1.17266 0.89535 0.92506 0.87764 1.19539 0.93855 1.00363 1.33738 0.89595 1.25935 1.00877 0.94838 0.92489 1.69840 1.27796 1.22260 1.21097 0.86272 0.79994 0.80069 0.80395 1.19329 1.18163 1.19932 0.90968 0.90988 0.89481 0.88802 0.91746 0.92077 0.87902 0.87611 0.73888 0.89237 0.86098 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.98 101.05 0.91 -1.51 16 2 S -0.13 -2.67 21.25 -107.50 -2.28 -4.96 16 3 C -0.20 -4.77 6.19 -38.03 -0.24 -5.01 16 4 C -0.08 -1.77 8.82 -39.40 -0.35 -2.12 16 5 C -0.21 -4.19 5.15 -104.42 -0.54 -4.73 16 6 C -0.04 -0.67 4.62 -27.88 -0.13 -0.80 16 7 C -0.11 -1.56 5.79 -27.88 -0.16 -1.72 16 8 C 0.48 6.60 8.33 36.01 0.30 6.90 16 9 O -0.52 -8.66 16.74 -18.75 -0.31 -8.97 16 10 O -0.52 -5.71 13.42 -39.26 -0.53 -6.24 16 11 C -0.09 -2.07 9.61 -39.97 -0.38 -2.45 16 12 C -0.15 -3.67 8.63 -39.29 -0.34 -4.01 16 13 C 0.14 3.48 5.58 -106.62 -0.59 2.89 16 14 C -0.45 -11.49 8.45 -37.93 -0.32 -11.81 16 15 H 0.09 2.20 7.04 -52.49 -0.37 1.84 16 16 C 0.08 1.89 5.15 -17.33 -0.09 1.80 16 17 N -0.79 -19.45 10.98 55.55 0.61 -18.84 16 18 Si 0.91 18.24 29.59 -169.99 -5.03 13.21 16 19 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 22 H 0.07 1.11 7.55 -51.91 -0.39 0.72 16 23 H 0.07 1.11 7.55 -51.91 -0.39 0.72 16 24 H 0.09 1.17 8.14 -51.92 -0.42 0.74 16 25 H 0.09 1.77 5.51 -52.49 -0.29 1.48 16 26 H 0.06 1.08 8.04 -51.93 -0.42 0.67 16 27 H 0.06 1.02 8.03 -51.93 -0.42 0.60 16 28 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 29 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.40 2.57 9.10 45.56 0.41 2.99 16 31 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.12 3.07 6.20 -52.49 -0.33 2.74 16 33 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 LS Contribution 298.39 15.07 4.50 4.50 Total: -1.00 -28.65 298.39 -7.99 -36.64 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -3.01 Total: 7.23 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -1.93 Total: -22.57 kcal Atomic # 7 Polarization: -19.45 SS G_CDS: 0.61 Total: -18.84 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.84 Total: -15.22 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Atomic # 16 Polarization: -2.67 SS G_CDS: -2.28 Total: -4.96 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.65 -7.99 -36.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396045436.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.190 kcal (2) G-P(sol) polarization free energy of solvation -28.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds