Wall clock time and date at job start Mon Mar 30 2020 06:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80997 * 1 3 3 C 1.76198 * 99.99920 * 2 1 4 4 C 1.38915 * 120.31137 * 359.97438 * 3 2 1 5 5 C 1.38047 * 120.01778 * 180.02562 * 4 3 2 6 6 C 1.50704 * 119.67934 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.46694 * 89.99899 * 6 5 4 8 8 C 1.50704 * 109.46646 * 180.02562 * 7 6 5 9 9 O 1.20828 * 120.00026 * 359.97438 * 8 7 6 10 10 O 1.34229 * 119.99794 * 180.02562 * 8 7 6 11 11 C 1.38975 * 120.64724 * 359.95776 * 5 4 3 12 12 C 1.36408 * 120.62275 * 359.77643 * 11 5 4 13 13 C 1.40752 * 119.95758 * 0.50280 * 12 11 5 14 14 C 1.40969 * 120.31593 * 179.75872 * 13 12 11 15 15 H 1.07994 * 120.00277 * 205.58572 * 14 13 12 16 16 C 1.39901 * 119.99445 * 25.58019 * 14 13 12 17 17 N 1.30893 * 120.00695 * 16.96278 * 16 14 13 18 18 Si 1.86804 * 119.99574 * 196.96664 * 16 14 13 19 19 H 1.48507 * 109.46825 * 265.18947 * 18 16 14 20 20 H 1.48495 * 109.47293 * 25.18978 * 18 16 14 21 21 H 1.48506 * 109.47179 * 145.18989 * 18 16 14 22 22 H 1.09006 * 109.47159 * 300.00112 * 1 2 3 23 23 H 1.09003 * 109.47063 * 59.99997 * 1 2 3 24 24 H 1.09000 * 109.47604 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.99016 * 0.02562 * 4 3 2 26 26 H 1.08993 * 109.47266 * 209.99812 * 6 5 4 27 27 H 1.08997 * 109.46751 * 330.00292 * 6 5 4 28 28 H 1.09000 * 109.46982 * 299.99671 * 7 6 5 29 29 H 1.08997 * 109.47200 * 60.00669 * 7 6 5 30 30 H 0.96700 * 116.99787 * 179.97438 * 10 8 7 31 31 H 1.07991 * 119.68951 * 180.02562 * 11 5 4 32 32 H 1.08000 * 120.02348 * 180.23064 * 12 11 5 33 33 H 0.96997 * 120.00682 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 1.0566 2.6339 -0.0005 5 6 1.3033 3.9922 -0.0011 6 6 0.1483 4.9603 -0.0022 7 6 -0.2433 5.2886 1.4400 8 6 -1.3986 6.2562 1.4388 9 8 -1.8610 6.6439 0.3919 10 8 -1.9134 6.6882 2.6007 11 6 2.6062 4.4756 -0.0002 12 6 3.6660 3.6167 0.0058 13 6 3.4443 2.2268 0.0004 14 6 4.5339 1.3324 0.0014 15 1 4.4176 0.3391 -0.4061 16 6 5.7660 1.7317 0.5303 17 7 5.8344 2.7800 1.3111 18 14 7.3137 0.7686 0.1221 19 1 7.5736 -0.2275 1.1925 20 1 7.1327 0.0669 -1.1739 21 1 8.4654 1.7011 0.0235 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 0.0398 2.2699 -0.0005 26 1 0.4419 5.8755 -0.5163 27 1 -0.7015 4.5113 -0.5163 28 1 -0.5369 4.3733 1.9540 29 1 0.6065 5.7375 1.9540 30 1 -2.6534 7.3085 2.5494 31 1 2.7814 5.5412 -0.0002 32 1 4.6746 4.0029 0.0102 33 1 6.6885 3.0566 1.6781 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396045436.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:52 Heat of formation + Delta-G solvation = -109.660893 kcal Electronic energy + Delta-G solvation = -17303.513698 eV Core-core repulsion = 14418.567358 eV Total energy + Delta-G solvation = -2884.946340 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.22685 -39.55436 -37.15534 -36.10612 -34.20529 -31.77656 -31.21377 -29.35887 -27.78859 -25.10108 -23.10564 -22.42698 -21.34807 -19.31144 -19.07430 -17.71695 -17.26125 -17.11198 -16.83040 -16.03736 -15.75544 -15.02122 -14.67794 -14.57064 -14.33005 -14.25441 -14.17027 -13.48769 -13.31287 -13.00577 -12.79709 -12.65886 -12.52333 -12.43956 -12.20128 -11.96128 -11.81657 -11.59855 -11.35603 -11.01664 -10.66978 -10.12440 -9.25692 -8.70138 -8.06491 -6.27398 0.87583 1.03799 1.21825 1.23795 1.38152 1.47135 1.53329 2.00260 2.19716 2.22937 2.71462 3.63104 4.06306 4.13156 4.27929 4.37948 4.39873 4.44457 4.61803 4.76619 4.81040 4.85823 4.92223 5.13485 5.18213 5.29596 5.40236 5.63475 5.64923 5.83380 6.02312 6.20149 6.31653 6.64638 6.88726 6.97270 7.04419 8.29797 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021325 B = 0.005317 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.684786 B = 5265.182204 C = 6246.893988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.168 6.168 3 C -0.215 4.215 4 C -0.091 4.091 5 C -0.190 4.190 6 C -0.034 4.034 7 C -0.106 4.106 8 C 0.490 3.510 9 O -0.552 6.552 10 O -0.513 6.513 11 C -0.100 4.100 12 C -0.173 4.173 13 C 0.100 3.900 14 C -0.481 4.481 15 H 0.075 0.925 16 C 0.040 3.960 17 N -0.817 5.817 18 Si 0.975 3.025 19 H -0.263 1.263 20 H -0.261 1.261 21 H -0.263 1.263 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.117 0.883 25 H 0.122 0.878 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.426 0.574 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.188 2.578 1.963 9.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.070 5.930 3 C -0.327 4.327 4 C -0.114 4.114 5 C -0.193 4.193 6 C -0.072 4.072 7 C -0.143 4.143 8 C 0.334 3.666 9 O -0.443 6.443 10 O -0.327 6.327 11 C -0.119 4.119 12 C -0.194 4.194 13 C 0.094 3.906 14 C -0.510 4.510 15 H 0.093 0.907 16 C -0.176 4.176 17 N -0.443 5.443 18 Si 0.796 3.204 19 H -0.188 1.188 20 H -0.185 1.185 21 H -0.187 1.187 22 H 0.100 0.900 23 H 0.099 0.901 24 H 0.135 0.865 25 H 0.140 0.860 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.131 0.869 29 H 0.129 0.871 30 H 0.288 0.712 31 H 0.128 0.872 32 H 0.121 0.879 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.139 1.505 1.867 8.485 hybrid contribution -0.336 1.229 -0.104 1.278 sum -8.475 2.734 1.763 9.078 Atomic orbital electron populations 1.23575 0.94498 1.07153 1.05217 1.85219 1.07144 1.06004 1.94597 1.21826 0.96363 0.94793 1.19751 1.20790 0.96637 0.92800 1.01197 1.19168 0.93626 0.92988 1.13477 1.19963 0.95427 0.97640 0.94170 1.21449 0.94473 0.98213 1.00176 1.23713 0.83016 0.79216 0.80644 1.90697 1.61640 1.57484 1.34489 1.84535 1.51668 1.61559 1.34935 1.20597 0.92588 0.98358 1.00406 1.20978 0.98233 0.93120 1.07097 1.17619 0.90821 0.93113 0.89071 1.19648 0.95336 1.00336 1.35722 0.90691 1.26660 1.03228 0.95776 0.91902 1.69876 1.28771 1.23643 1.22004 0.85297 0.76508 0.78813 0.79829 1.18782 1.18519 1.18716 0.90013 0.90091 0.86495 0.85996 0.91637 0.91460 0.86890 0.87112 0.71244 0.87214 0.87877 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 8.98 113.37 1.02 -2.92 16 2 S -0.17 -6.99 21.25 -56.49 -1.20 -8.19 16 3 C -0.21 -10.17 6.19 23.27 0.14 -10.03 16 4 C -0.09 -3.72 8.82 22.39 0.20 -3.52 16 5 C -0.19 -7.44 5.15 -19.73 -0.10 -7.54 16 6 C -0.03 -1.07 4.62 29.85 0.14 -0.93 16 7 C -0.11 -2.74 5.79 29.85 0.17 -2.56 16 8 C 0.49 12.08 8.33 71.24 0.59 12.67 16 9 O -0.55 -16.92 16.74 21.96 0.37 -16.55 16 10 O -0.51 -9.46 13.42 -51.41 -0.69 -10.15 16 11 C -0.10 -4.35 9.61 22.02 0.21 -4.14 16 12 C -0.17 -8.81 8.63 22.46 0.19 -8.62 16 13 C 0.10 5.29 5.58 -21.16 -0.12 5.18 16 14 C -0.48 -25.89 8.45 23.34 0.20 -25.69 16 15 H 0.08 4.05 7.04 -2.91 -0.02 4.03 16 16 C 0.04 2.02 5.15 85.24 0.44 2.45 16 17 N -0.82 -41.92 10.98 21.82 0.24 -41.68 16 18 Si 0.97 38.42 29.59 68.60 2.03 40.45 16 19 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 20 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 21 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 22 H 0.08 2.24 7.55 -2.39 -0.02 2.22 16 23 H 0.08 2.23 7.55 -2.39 -0.02 2.21 16 24 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 25 H 0.12 4.23 5.51 -2.91 -0.02 4.21 16 26 H 0.06 2.05 8.04 -2.39 -0.02 2.03 16 27 H 0.07 2.04 8.03 -2.39 -0.02 2.02 16 28 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 29 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.43 3.90 9.10 -74.06 -0.67 3.22 16 31 H 0.11 4.22 8.06 -2.92 -0.02 4.20 16 32 H 0.10 5.51 6.20 -2.91 -0.02 5.49 16 33 H 0.29 13.38 8.30 -92.71 -0.77 12.61 16 Total: -1.00 -63.59 298.39 4.30 -59.29 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.47 Total: 22.48 kcal Atomic # 6 Polarization: -48.73 SS G_CDS: 3.09 Total: -45.65 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.24 Total: -41.68 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.32 Total: -26.70 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Atomic # 16 Polarization: -6.99 SS G_CDS: -1.20 Total: -8.19 kcal Total: -63.59 4.30 -59.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396045436.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.372 kcal (2) G-P(sol) polarization free energy of solvation -63.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds