Wall clock time and date at job start Mon Mar 30 2020 07:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47303 * 2 1 4 4 C 1.36233 * 120.03846 * 265.00164 * 3 2 1 5 5 C 1.40300 * 120.07659 * 179.97438 * 4 3 2 6 6 C 1.46864 * 119.91896 * 179.97438 * 5 4 3 7 7 O 1.21310 * 119.99957 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99615 * 180.02562 * 6 5 4 9 9 C 1.53004 * 109.46843 * 180.02562 * 8 6 5 10 10 Cl 1.80306 * 109.46957 * 179.97438 * 9 8 6 11 11 C 1.40329 * 120.15398 * 0.27509 * 5 4 3 12 12 C 1.36192 * 120.08138 * 359.48277 * 11 5 4 13 13 C 1.40946 * 120.04276 * 85.01649 * 3 2 1 14 14 C 1.40994 * 120.07365 * 0.02562 * 13 3 2 15 15 H 1.08004 * 119.99914 * 333.84319 * 14 13 3 16 16 C 1.40328 * 120.00095 * 153.84380 * 14 13 3 17 17 N 1.30586 * 120.00259 * 343.69311 * 16 14 13 18 18 Si 1.86799 * 120.00159 * 163.69310 * 16 14 13 19 19 H 1.48499 * 109.46990 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47384 * 119.99981 * 18 16 14 21 21 H 1.48502 * 109.46971 * 240.00088 * 18 16 14 22 22 H 1.09006 * 109.47164 * 300.00486 * 1 2 3 23 23 H 1.09005 * 109.46708 * 59.99785 * 1 2 3 24 24 H 1.08995 * 109.47594 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47110 * 239.99806 * 2 1 3 26 26 H 1.08997 * 109.46943 * 119.99614 * 2 1 3 27 27 H 1.07993 * 119.95942 * 0.02562 * 4 3 2 28 28 H 1.08994 * 109.47572 * 60.00291 * 8 6 5 29 29 H 1.09006 * 109.47487 * 299.99847 * 8 6 5 30 30 H 1.09000 * 109.47274 * 299.99584 * 9 8 6 31 31 H 1.09003 * 109.47413 * 60.00386 * 9 8 6 32 32 H 1.08004 * 119.95817 * 179.74497 * 11 5 4 33 33 H 1.08003 * 120.03920 * 180.25490 * 12 11 5 34 34 H 0.97000 * 120.00389 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3566 2.0295 -1.1749 5 6 2.8239 3.3524 -1.1758 6 6 3.1730 4.0050 -2.4444 7 8 3.0567 3.4005 -3.4896 8 6 3.6756 5.4257 -2.4474 9 6 3.9632 5.8618 -3.8855 10 17 4.5638 7.5619 -3.8892 11 6 2.9645 4.0512 0.0329 12 6 2.6376 3.4506 1.2107 13 6 2.1677 2.1214 1.2155 14 6 1.8339 1.4943 2.4334 15 1 1.1105 0.6925 2.4474 16 6 2.4416 1.9120 3.6273 17 7 3.5255 2.6394 3.5887 18 14 1.7001 1.4277 5.2720 19 1 0.4830 0.6080 5.0440 20 1 2.6899 0.6381 6.0479 21 1 1.3383 2.6515 6.0314 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.2530 1.4933 -2.1066 28 1 4.5905 5.4887 -1.8584 29 1 2.9188 6.0798 -2.0142 30 1 4.7198 5.2079 -4.3191 31 1 3.0480 5.7990 -4.4742 32 1 3.3284 5.0681 0.0288 33 1 2.7421 3.9904 2.1402 34 1 3.9457 2.9278 4.4139 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396045459.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:43 Heat of formation + Delta-G solvation = -72.114479 kcal Electronic energy + Delta-G solvation = -17407.168100 eV Core-core repulsion = 14521.806188 eV Total energy + Delta-G solvation = -2885.361912 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.63703 -39.18392 -37.00136 -35.68775 -34.83328 -33.23320 -31.65444 -30.09142 -28.12246 -25.49006 -24.21287 -22.98649 -21.84530 -20.01582 -19.13302 -17.50979 -17.18525 -16.61336 -16.33282 -15.71480 -15.57042 -14.88144 -14.66139 -14.43996 -14.16616 -13.93266 -13.81787 -13.56233 -13.33253 -13.12788 -12.84903 -12.65494 -12.48629 -12.31607 -12.11715 -11.85850 -11.61826 -11.49326 -11.32714 -11.20611 -11.04536 -10.31889 -9.39847 -9.30249 -8.78327 -6.44688 0.24006 1.19896 1.24134 1.33932 1.40871 1.54639 1.86398 2.15683 2.73473 3.44873 3.66527 3.75210 3.95302 4.29820 4.33274 4.41426 4.51855 4.61867 4.73666 4.75859 4.81241 4.89979 5.00106 5.05199 5.13868 5.18563 5.29129 5.47924 5.50486 5.70308 5.95618 5.99129 6.09017 6.28372 6.58208 6.80075 6.90420 6.94136 8.14979 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.023692 B = 0.004694 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.558734 B = 5963.811012 C = 6989.744371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.059 4.059 3 C -0.218 4.218 4 C -0.035 4.035 5 C -0.326 4.326 6 C 0.407 3.593 7 O -0.531 6.531 8 C -0.165 4.165 9 C -0.008 4.008 10 Cl -0.192 7.192 11 C -0.049 4.049 12 C -0.206 4.206 13 C 0.111 3.889 14 C -0.454 4.454 15 H 0.093 0.907 16 C 0.038 3.962 17 N -0.795 5.795 18 Si 0.981 3.019 19 H -0.254 1.254 20 H -0.266 1.266 21 H -0.263 1.263 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.098 0.902 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.124 0.876 33 H 0.109 0.891 34 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.967 3.104 -2.724 4.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.097 4.097 3 C -0.219 4.219 4 C -0.053 4.053 5 C -0.328 4.328 6 C 0.294 3.706 7 O -0.416 6.416 8 C -0.202 4.202 9 C -0.071 4.071 10 Cl -0.166 7.166 11 C -0.068 4.068 12 C -0.225 4.225 13 C 0.108 3.892 14 C -0.481 4.481 15 H 0.111 0.889 16 C -0.182 4.182 17 N -0.419 5.419 18 Si 0.801 3.199 19 H -0.177 1.177 20 H -0.190 1.190 21 H -0.188 1.188 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.087 0.913 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.117 0.883 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.142 0.858 33 H 0.127 0.873 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.785 3.050 -3.107 4.424 hybrid contribution 0.040 -0.023 0.822 0.823 sum -0.745 3.027 -2.285 3.865 Atomic orbital electron populations 1.21661 0.95029 1.01444 1.01050 1.20160 0.96087 0.92587 1.00838 1.19770 1.11759 0.97447 0.92906 1.20554 0.94601 0.93823 0.96364 1.19728 1.21435 0.97618 0.94064 1.22215 0.72366 0.88575 0.87429 1.90410 1.48176 1.67645 1.35334 1.22219 1.05073 0.95276 0.97663 1.24072 1.03022 0.81744 0.98247 1.98703 1.90531 1.28236 1.99145 1.20876 0.95810 0.98539 0.91574 1.21046 1.08592 0.95663 0.97185 1.18021 0.87096 0.91410 0.92675 1.20208 1.20279 1.16045 0.91549 0.88900 1.26935 0.93445 0.92739 1.05057 1.69747 1.14042 1.25532 1.32545 0.85156 0.79578 0.79386 0.75803 1.17697 1.19023 1.18758 0.93613 0.93641 0.91278 0.92486 0.92312 0.88350 0.86818 0.86544 0.88419 0.88262 0.85780 0.87323 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 9.78 71.98 0.70 -3.86 16 2 C -0.06 -2.32 5.39 29.85 0.16 -2.16 16 3 C -0.22 -9.97 5.15 -19.67 -0.10 -10.07 16 4 C -0.03 -1.58 9.14 22.30 0.20 -1.37 16 5 C -0.33 -13.98 5.89 -20.01 -0.12 -14.09 16 6 C 0.41 15.17 7.11 27.94 0.20 15.37 16 7 O -0.53 -22.03 15.95 -3.12 -0.05 -22.08 16 8 C -0.16 -4.54 4.41 29.85 0.13 -4.41 16 9 C -0.01 -0.20 5.95 71.98 0.43 0.23 16 10 Cl -0.19 -4.56 29.15 -2.72 -0.08 -4.64 16 11 C -0.05 -2.09 9.40 22.30 0.21 -1.88 16 12 C -0.21 -9.83 8.61 22.46 0.19 -9.64 16 13 C 0.11 5.45 5.56 -21.27 -0.12 5.33 16 14 C -0.45 -21.49 8.09 23.45 0.19 -21.30 16 15 H 0.09 4.19 6.06 -2.91 -0.02 4.17 16 16 C 0.04 1.68 5.16 85.39 0.44 2.12 16 17 N -0.80 -36.91 10.96 21.89 0.24 -36.67 16 18 Si 0.98 33.52 29.59 68.60 2.03 35.55 16 19 H -0.25 -8.49 7.11 99.48 0.71 -7.78 16 20 H -0.27 -8.80 7.11 99.48 0.71 -8.09 16 21 H -0.26 -8.71 7.11 99.48 0.71 -8.01 16 22 H 0.04 1.64 7.28 -2.38 -0.02 1.62 16 23 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 24 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.06 2.05 8.04 -2.39 -0.02 2.03 16 26 H 0.06 2.34 7.05 -2.39 -0.02 2.33 16 27 H 0.10 4.35 7.62 -2.91 -0.02 4.33 16 28 H 0.11 2.93 8.07 -2.39 -0.02 2.91 16 29 H 0.12 2.92 8.08 -2.38 -0.02 2.90 16 30 H 0.10 2.40 8.10 -2.39 -0.02 2.39 16 31 H 0.10 2.41 8.10 -2.39 -0.02 2.39 16 32 H 0.12 4.37 7.01 -2.91 -0.02 4.35 16 33 H 0.11 5.34 6.21 -2.91 -0.02 5.32 16 34 H 0.30 12.26 8.29 -92.71 -0.77 11.49 16 Total: -1.00 -53.59 302.80 5.77 -47.82 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 1.10 Total: 25.75 kcal Atomic # 6 Polarization: -48.25 SS G_CDS: 2.52 Total: -45.73 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.24 Total: -36.67 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.05 Total: -22.08 kcal Atomic # 14 Polarization: 33.52 SS G_CDS: 2.03 Total: 35.55 kcal Atomic # 17 Polarization: -4.56 SS G_CDS: -0.08 Total: -4.64 kcal Total: -53.59 5.77 -47.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396045459.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.291 kcal (2) G-P(sol) polarization free energy of solvation -53.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds