Wall clock time and date at job start Mon Mar 30 2020 06:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76198 * 102.99976 * 2 1 4 4 C 1.39399 * 119.95477 * 359.97438 * 3 2 1 5 5 C 1.38458 * 120.41596 * 180.02562 * 4 3 2 6 6 C 1.37710 * 120.33090 * 359.97438 * 5 4 3 7 7 C 1.40762 * 119.90438 * 359.74779 * 6 5 4 8 8 C 1.41407 * 120.20487 * 180.27534 * 7 6 5 9 9 H 1.08006 * 119.99961 * 205.57382 * 8 7 6 10 10 C 1.39922 * 120.00291 * 25.57558 * 8 7 6 11 11 N 1.30838 * 119.99688 * 15.18499 * 10 8 7 12 12 Si 1.86800 * 120.00307 * 195.18306 * 10 8 7 13 13 H 1.48497 * 109.46882 * 59.99882 * 12 10 8 14 14 H 1.48498 * 109.47540 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47225 * 300.00415 * 12 10 8 16 16 C 1.38344 * 119.95773 * 179.97438 * 3 2 1 17 17 C 1.50695 * 120.16414 * 359.96585 * 16 3 2 18 18 C 1.53004 * 109.47632 * 89.99230 * 17 16 3 19 19 C 1.50693 * 109.47157 * 179.97438 * 18 17 16 20 20 O 1.20826 * 120.00256 * 0.02562 * 19 18 17 21 21 O 1.34226 * 120.00211 * 179.97438 * 19 18 17 22 22 H 1.09004 * 109.46891 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46674 * 299.99479 * 1 2 3 24 24 H 1.08999 * 109.47060 * 59.99682 * 1 2 3 25 25 H 1.07997 * 119.79602 * 359.97438 * 4 3 2 26 26 H 1.08000 * 119.83607 * 180.02562 * 5 4 3 27 27 H 1.08000 * 120.04634 * 179.97438 * 6 5 4 28 28 H 0.97003 * 119.99597 * 180.02562 * 11 10 8 29 29 H 1.09006 * 109.46944 * 329.99133 * 17 16 3 30 30 H 1.09001 * 109.46841 * 209.99384 * 17 16 3 31 31 H 1.09005 * 109.46552 * 59.99748 * 18 17 16 32 32 H 1.09001 * 109.47133 * 299.99974 * 18 17 16 33 33 H 0.96706 * 117.00640 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1901 2.6667 -0.0005 5 6 1.4907 4.0183 -0.0011 6 6 2.8020 4.4391 -0.0006 7 6 3.8430 3.4917 0.0059 8 6 5.1917 3.9167 0.0124 9 1 5.9624 3.2739 -0.3867 10 6 5.5278 5.1701 0.5357 11 7 4.6693 5.8202 1.2789 12 14 7.2020 5.9152 0.1735 13 1 7.3616 6.0843 -1.2931 14 1 7.3093 7.2386 0.8385 15 1 8.2659 5.0151 0.6866 16 6 3.5337 2.1203 0.0005 17 6 4.6380 1.0949 0.0019 18 6 5.0126 0.7467 -1.4401 19 6 6.1173 -0.2782 -1.4386 20 8 6.5594 -0.6885 -0.3917 21 8 6.6095 -0.7361 -2.6004 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5137 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 0.1587 2.3465 -0.0014 26 1 0.6929 4.7462 -0.0011 27 1 3.0312 5.4945 -0.0014 28 1 4.9022 6.6893 1.6414 29 1 4.2984 0.1959 0.5163 30 1 5.5095 1.5003 0.5159 31 1 5.3522 1.6458 -1.9545 32 1 4.1410 0.3413 -1.9541 33 1 7.3172 -1.3932 -2.5489 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396045505.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:12 Heat of formation + Delta-G solvation = -93.059164 kcal Electronic energy + Delta-G solvation = -17767.011017 eV Core-core repulsion = 14882.784582 eV Total energy + Delta-G solvation = -2884.226435 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.87469 -37.86983 -35.84737 -33.78757 -33.27105 -29.99725 -29.04392 -28.47757 -25.52248 -24.21001 -21.35447 -20.87939 -19.48953 -17.82109 -17.50664 -16.13130 -15.85622 -15.65769 -15.28596 -14.63394 -14.17494 -13.46894 -13.35192 -13.19158 -12.95706 -12.57698 -12.32724 -12.08096 -11.77857 -11.47657 -11.22497 -11.14973 -11.08529 -10.84511 -10.54717 -10.43183 -10.22272 -10.17182 -9.52821 -9.32150 -9.14655 -8.46019 -7.48810 -6.85561 -6.50824 -4.48273 2.28838 2.59980 2.67274 2.68130 3.02658 3.05412 3.13600 3.20759 3.49299 3.86985 4.50158 5.39812 5.41497 5.44494 5.56278 5.70205 5.85247 5.94966 6.14526 6.21702 6.26986 6.49800 6.69592 6.75355 6.90624 6.99836 7.06810 7.18459 7.38530 7.64761 7.83943 7.91091 8.11218 8.23907 8.49481 8.77242 8.82026 10.09493 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.013226 B = 0.008889 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.466047 B = 3149.075112 C = 4998.943767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.161 6.161 3 C -0.043 4.043 4 C -0.247 4.247 5 C -0.092 4.092 6 C -0.160 4.160 7 C 0.128 3.872 8 C -0.454 4.454 9 H 0.081 0.919 10 C 0.077 3.923 11 N -0.790 5.790 12 Si 0.907 3.093 13 H -0.263 1.263 14 H -0.278 1.278 15 H -0.264 1.264 16 C -0.174 4.174 17 C -0.042 4.042 18 C -0.106 4.106 19 C 0.478 3.522 20 O -0.519 6.519 21 O -0.523 6.523 22 H 0.092 0.908 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.122 0.878 28 H 0.282 0.718 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.417 -5.957 -4.808 7.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.079 5.921 3 C -0.154 4.154 4 C -0.271 4.271 5 C -0.113 4.113 6 C -0.181 4.181 7 C 0.124 3.876 8 C -0.483 4.483 9 H 0.099 0.901 10 C -0.142 4.142 11 N -0.415 5.415 12 Si 0.731 3.269 13 H -0.187 1.187 14 H -0.203 1.203 15 H -0.189 1.189 16 C -0.180 4.180 17 C -0.079 4.079 18 C -0.144 4.144 19 C 0.321 3.679 20 O -0.407 6.407 21 O -0.335 6.335 22 H 0.111 0.889 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.140 0.860 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -1.014 -6.593 -4.383 7.981 hybrid contribution 0.232 1.176 0.021 1.198 sum -0.782 -5.417 -4.362 6.999 Atomic orbital electron populations 1.23504 0.96857 1.05262 1.05082 1.85039 1.04626 1.08332 1.94139 1.20947 0.96213 0.92661 1.05623 1.20341 0.95634 0.93258 1.17898 1.20580 0.96308 0.93958 1.00423 1.21426 0.91062 1.00133 1.05458 1.17354 0.93523 0.89195 0.87540 1.19550 0.93384 1.00310 1.35102 0.90088 1.25915 0.99124 0.96583 0.92565 1.69805 1.36024 1.13231 1.22434 0.86368 0.82009 0.78568 0.79920 1.18708 1.20255 1.18851 1.19176 0.90194 0.93945 1.14727 1.19984 0.98263 0.97144 0.92552 1.21510 0.94513 0.96248 1.02108 1.24044 0.82474 0.80815 0.80528 1.90684 1.59299 1.57430 1.33274 1.84601 1.53781 1.58239 1.36863 0.88914 0.90480 0.90504 0.89088 0.89122 0.85976 0.90674 0.91879 0.90164 0.87473 0.87983 0.74169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.14 101.05 0.92 -1.04 16 2 S -0.16 -2.93 20.75 -107.50 -2.23 -5.16 16 3 C -0.04 -0.93 6.10 -39.11 -0.24 -1.17 16 4 C -0.25 -5.32 9.37 -39.07 -0.37 -5.69 16 5 C -0.09 -2.08 10.01 -39.69 -0.40 -2.48 16 6 C -0.16 -3.96 8.68 -38.82 -0.34 -4.29 16 7 C 0.13 3.20 5.57 -106.85 -0.60 2.61 16 8 C -0.45 -11.25 8.14 -37.75 -0.31 -11.56 16 9 H 0.08 1.92 6.62 -52.48 -0.35 1.57 16 10 C 0.08 1.83 5.19 -17.34 -0.09 1.74 16 11 N -0.79 -19.57 10.87 55.55 0.60 -18.96 16 12 Si 0.91 18.07 29.59 -169.99 -5.03 13.04 16 13 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 14 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 15 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 16 C -0.17 -4.00 5.21 -103.70 -0.54 -4.54 16 17 C -0.04 -0.87 3.59 -27.88 -0.10 -0.97 16 18 C -0.11 -1.88 5.79 -27.88 -0.16 -2.05 16 19 C 0.48 8.05 8.33 36.00 0.30 8.35 16 20 O -0.52 -10.18 16.74 -18.75 -0.31 -10.49 16 21 O -0.52 -6.95 13.42 -39.25 -0.53 -7.47 16 22 H 0.09 1.07 8.14 -51.92 -0.42 0.65 16 23 H 0.08 1.09 7.74 -51.93 -0.40 0.68 16 24 H 0.08 1.05 7.74 -51.92 -0.40 0.65 16 25 H 0.09 1.74 5.85 -52.49 -0.31 1.43 16 26 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 27 H 0.12 3.11 6.14 -52.49 -0.32 2.78 16 28 H 0.28 6.40 8.30 -40.82 -0.34 6.07 16 29 H 0.06 1.33 6.73 -51.93 -0.35 0.98 16 30 H 0.08 1.80 6.71 -51.93 -0.35 1.45 16 31 H 0.11 1.89 7.92 -51.93 -0.41 1.47 16 32 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 33 H 0.40 3.43 9.10 45.56 0.41 3.85 16 LS Contribution 295.00 15.07 4.45 4.45 Total: -1.00 -28.21 295.00 -7.84 -36.04 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -2.88 Total: 9.63 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: -1.91 Total: -21.07 kcal Atomic # 7 Polarization: -19.57 SS G_CDS: 0.60 Total: -18.96 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.84 Total: -17.97 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 16 Polarization: -2.93 SS G_CDS: -2.23 Total: -5.16 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.21 -7.84 -36.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396045505.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.015 kcal (2) G-P(sol) polarization free energy of solvation -28.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds