Wall clock time and date at job start Mon Mar 30 2020 07:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.46943 * 2 1 4 4 C 1.38296 * 119.83518 * 257.09177 * 3 2 1 5 5 C 1.37752 * 120.44433 * 180.02562 * 4 3 2 6 6 C 1.40812 * 120.09869 * 359.95373 * 5 4 3 7 7 C 1.41447 * 120.16488 * 180.30230 * 6 5 4 8 8 H 1.07999 * 119.99632 * 154.76851 * 7 6 5 9 9 C 1.39927 * 119.99858 * 334.76496 * 7 6 5 10 10 N 1.30833 * 120.00343 * 343.16611 * 9 7 6 11 11 Si 1.86804 * 119.99817 * 163.17257 * 9 7 6 12 12 H 1.48494 * 109.47257 * 59.99769 * 11 9 7 13 13 H 1.48507 * 109.47064 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.47049 * 299.99385 * 11 9 7 15 15 C 1.40423 * 119.66855 * 0.02562 * 6 5 4 16 16 C 1.39335 * 119.56648 * 0.02562 * 15 6 5 17 17 C 1.47210 * 120.05640 * 179.97438 * 16 15 6 18 18 O 1.21246 * 120.00493 * 184.47855 * 17 16 15 19 19 C 1.50703 * 119.99864 * 4.47952 * 17 16 15 20 20 H 1.08999 * 109.47401 * 163.80868 * 19 17 16 21 21 C 1.53000 * 109.47244 * 283.81179 * 19 17 16 22 22 Cl 1.80303 * 109.47228 * 43.81364 * 19 17 16 23 23 H 1.09006 * 109.47454 * 59.99699 * 1 2 3 24 24 H 1.08999 * 109.47243 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47214 * 299.99957 * 1 2 3 26 26 H 1.08999 * 109.47214 * 240.00043 * 2 1 3 27 27 H 1.08991 * 109.47098 * 119.99893 * 2 1 3 28 28 H 1.08000 * 119.77641 * 0.02562 * 4 3 2 29 29 H 1.08007 * 119.95291 * 179.97438 * 5 4 3 30 30 H 0.96998 * 119.99791 * 180.02562 * 10 9 7 31 31 H 1.08001 * 120.22096 * 180.02562 * 15 6 5 32 32 H 1.08996 * 109.46920 * 60.00267 * 21 19 17 33 33 H 1.09006 * 109.46964 * 180.02562 * 21 19 17 34 34 H 1.08995 * 109.46830 * 299.99653 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.5143 1.9803 -1.1693 5 6 2.9770 3.2777 -1.1835 6 6 2.9612 4.0459 -0.0035 7 6 3.4301 5.3803 -0.0179 8 1 3.0680 6.0878 0.7134 9 6 4.3630 5.7838 -0.9796 10 7 5.0461 4.8878 -1.6447 11 14 4.6332 7.6017 -1.3137 12 1 5.0885 8.2715 -0.0690 13 1 5.6662 7.7630 -2.3684 14 1 3.3601 8.2159 -1.7692 15 6 2.4724 3.4825 1.1862 16 6 2.0088 2.1686 1.1850 17 6 1.4945 1.5670 2.4263 18 8 1.1673 0.3997 2.4440 19 6 1.3748 2.4021 3.6750 20 1 0.7265 1.8957 4.3901 21 6 2.7608 2.5976 4.2927 22 17 0.6705 4.0087 3.2584 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.5280 1.3959 -2.0775 29 1 3.3521 3.7065 -2.1011 30 1 5.6931 5.1676 -2.3111 31 1 2.4559 4.0638 2.0963 32 1 3.4091 3.1041 3.5777 33 1 2.6741 3.2013 5.1962 34 1 3.1865 1.6264 4.5446 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396045661.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:20 Heat of formation + Delta-G solvation = -39.328851 kcal Electronic energy + Delta-G solvation = -18169.446121 eV Core-core repulsion = 15285.505900 eV Total energy + Delta-G solvation = -2883.940220 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -39.56026 -37.14125 -35.96016 -34.18732 -32.86838 -31.90072 -29.64101 -29.02439 -25.34750 -24.84074 -22.53535 -21.72904 -20.11487 -19.14493 -17.28894 -15.68021 -15.53828 -15.02116 -14.68237 -14.37925 -14.10698 -13.94730 -13.05962 -12.79893 -12.55914 -12.33151 -12.13347 -12.06926 -11.80522 -11.52271 -11.26356 -11.17562 -11.02278 -10.82614 -10.57698 -10.31452 -10.20481 -10.17572 -9.93069 -9.27965 -9.18816 -8.62598 -7.59879 -7.41989 -6.80083 -4.39487 1.58303 2.40053 2.74045 3.04486 3.06676 3.13615 3.46865 3.90342 4.33207 4.54275 4.93957 5.00565 5.53712 5.59606 5.75500 5.77144 5.80536 5.96171 6.18196 6.21710 6.24573 6.44160 6.54167 6.66870 6.85466 6.89176 6.95713 7.01514 7.22381 7.37869 7.64465 7.82767 7.92640 8.02891 8.19181 8.51662 8.81075 8.84075 10.15324 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019134 B = 0.007473 C = 0.005877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.996040 B = 3745.846401 C = 4763.235413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.072 4.072 3 C -0.132 4.132 4 C -0.121 4.121 5 C -0.123 4.123 6 C 0.090 3.910 7 C -0.462 4.462 8 H 0.078 0.922 9 C 0.076 3.924 10 N -0.800 5.800 11 Si 0.907 3.093 12 H -0.265 1.265 13 H -0.279 1.279 14 H -0.264 1.264 15 C -0.166 4.166 16 C -0.152 4.152 17 C 0.400 3.600 18 O -0.456 6.456 19 C -0.049 4.049 20 H 0.113 0.887 21 C -0.156 4.156 22 Cl -0.145 7.145 23 H 0.043 0.957 24 H 0.040 0.960 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.122 0.878 30 H 0.281 0.719 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.494 -2.345 5.896 7.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.109 4.109 3 C -0.133 4.133 4 C -0.139 4.139 5 C -0.143 4.143 6 C 0.088 3.912 7 C -0.492 4.492 8 H 0.097 0.903 9 C -0.141 4.141 10 N -0.425 5.425 11 Si 0.731 3.269 12 H -0.190 1.190 13 H -0.204 1.204 14 H -0.189 1.189 15 C -0.186 4.186 16 C -0.153 4.153 17 C 0.281 3.719 18 O -0.334 6.334 19 C -0.094 4.094 20 H 0.132 0.868 21 C -0.213 4.213 22 Cl -0.119 7.119 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.140 0.860 30 H 0.092 0.908 31 H 0.138 0.862 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.520 -2.845 5.705 7.282 hybrid contribution 0.234 1.056 -0.269 1.115 sum -3.286 -1.789 5.436 6.599 Atomic orbital electron populations 1.21619 0.96370 0.99868 1.01037 1.20443 0.95175 0.94147 1.01177 1.19395 1.05618 0.95328 0.92996 1.20584 1.01385 0.96095 0.95861 1.21644 1.00151 0.93505 0.98981 1.17569 0.90092 0.93263 0.90262 1.19491 1.21163 0.95549 1.12980 0.90349 1.25865 0.94131 0.99723 0.94414 1.69779 1.17654 1.35618 1.19496 0.86387 0.78845 0.82699 0.78933 1.18996 1.20385 1.18860 1.21928 1.04844 0.93183 0.98608 1.19446 1.07186 0.96062 0.92559 1.22539 0.73498 0.87303 0.88584 1.90443 1.39555 1.17905 1.85509 1.24663 0.99468 0.86227 0.99017 0.86846 1.22110 0.93674 1.03483 1.02052 1.98729 1.85894 1.32507 1.94766 0.93829 0.94060 0.92959 0.93554 0.90456 0.88789 0.85987 0.90795 0.86179 0.89481 0.90680 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 9.37 37.16 0.35 -1.98 16 2 C -0.07 -1.39 5.34 -27.88 -0.15 -1.54 16 3 C -0.13 -2.88 5.21 -103.89 -0.54 -3.42 16 4 C -0.12 -2.74 9.62 -39.74 -0.38 -3.12 16 5 C -0.12 -3.06 8.69 -38.79 -0.34 -3.39 16 6 C 0.09 2.27 5.56 -106.88 -0.59 1.68 16 7 C -0.46 -11.67 9.05 -37.73 -0.34 -12.02 16 8 H 0.08 1.91 7.90 -52.49 -0.41 1.50 16 9 C 0.08 1.83 5.15 -17.34 -0.09 1.74 16 10 N -0.80 -19.92 10.94 55.55 0.61 -19.31 16 11 Si 0.91 18.19 29.59 -169.99 -5.03 13.16 16 12 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 13 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 14 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 15 C -0.17 -3.75 7.44 -38.35 -0.29 -4.04 16 16 C -0.15 -3.26 5.70 -105.13 -0.60 -3.86 16 17 C 0.40 7.49 5.71 -30.66 -0.18 7.31 16 18 O -0.46 -8.90 12.40 5.59 0.07 -8.83 16 19 C -0.05 -0.74 3.49 -27.88 -0.10 -0.84 16 20 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 21 C -0.16 -2.08 9.13 37.16 0.34 -1.74 16 22 Cl -0.15 -2.39 24.82 -51.86 -1.29 -3.68 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.98 6.28 -51.93 -0.33 0.65 16 26 H 0.05 0.82 7.96 -51.93 -0.41 0.41 16 27 H 0.08 1.53 5.99 -51.93 -0.31 1.22 16 28 H 0.09 1.93 8.00 -52.49 -0.42 1.51 16 29 H 0.12 3.12 6.15 -52.48 -0.32 2.80 16 30 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 31 H 0.12 2.52 4.08 -52.49 -0.21 2.30 16 32 H 0.09 1.32 6.43 -51.93 -0.33 0.99 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 290.35 15.07 4.38 4.38 Total: -1.00 -26.19 290.35 -8.17 -34.36 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -4.00 Total: 5.14 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: -2.91 Total: -25.22 kcal Atomic # 7 Polarization: -19.92 SS G_CDS: 0.61 Total: -19.31 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.07 Total: -8.83 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Atomic # 17 Polarization: -2.39 SS G_CDS: -1.29 Total: -3.68 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -26.19 -8.17 -34.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396045661.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.967 kcal (2) G-P(sol) polarization free energy of solvation -26.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds