Wall clock time and date at job start Mon Mar 30 2020 07:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.46943 * 2 1 4 4 C 1.38296 * 119.83518 * 257.09177 * 3 2 1 5 5 C 1.37752 * 120.44433 * 180.02562 * 4 3 2 6 6 C 1.40812 * 120.09869 * 359.95373 * 5 4 3 7 7 C 1.41447 * 120.16488 * 180.30230 * 6 5 4 8 8 H 1.07999 * 119.99632 * 154.76851 * 7 6 5 9 9 C 1.39927 * 119.99858 * 334.76496 * 7 6 5 10 10 N 1.30833 * 120.00343 * 343.16611 * 9 7 6 11 11 Si 1.86804 * 119.99817 * 163.17257 * 9 7 6 12 12 H 1.48494 * 109.47257 * 59.99769 * 11 9 7 13 13 H 1.48507 * 109.47064 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.47049 * 299.99385 * 11 9 7 15 15 C 1.40423 * 119.66855 * 0.02562 * 6 5 4 16 16 C 1.39335 * 119.56648 * 0.02562 * 15 6 5 17 17 C 1.47210 * 120.05640 * 179.97438 * 16 15 6 18 18 O 1.21246 * 120.00493 * 184.47855 * 17 16 15 19 19 C 1.50703 * 119.99864 * 4.47952 * 17 16 15 20 20 H 1.08999 * 109.47401 * 163.80868 * 19 17 16 21 21 C 1.53000 * 109.47244 * 283.81179 * 19 17 16 22 22 Cl 1.80303 * 109.47228 * 43.81364 * 19 17 16 23 23 H 1.09006 * 109.47454 * 59.99699 * 1 2 3 24 24 H 1.08999 * 109.47243 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47214 * 299.99957 * 1 2 3 26 26 H 1.08999 * 109.47214 * 240.00043 * 2 1 3 27 27 H 1.08991 * 109.47098 * 119.99893 * 2 1 3 28 28 H 1.08000 * 119.77641 * 0.02562 * 4 3 2 29 29 H 1.08007 * 119.95291 * 179.97438 * 5 4 3 30 30 H 0.96998 * 119.99791 * 180.02562 * 10 9 7 31 31 H 1.08001 * 120.22096 * 180.02562 * 15 6 5 32 32 H 1.08996 * 109.46920 * 60.00267 * 21 19 17 33 33 H 1.09006 * 109.46964 * 180.02562 * 21 19 17 34 34 H 1.08995 * 109.46830 * 299.99653 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.5143 1.9803 -1.1693 5 6 2.9770 3.2777 -1.1835 6 6 2.9612 4.0459 -0.0035 7 6 3.4301 5.3803 -0.0179 8 1 3.0680 6.0878 0.7134 9 6 4.3630 5.7838 -0.9796 10 7 5.0461 4.8878 -1.6447 11 14 4.6332 7.6017 -1.3137 12 1 5.0885 8.2715 -0.0690 13 1 5.6662 7.7630 -2.3684 14 1 3.3601 8.2159 -1.7692 15 6 2.4724 3.4825 1.1862 16 6 2.0088 2.1686 1.1850 17 6 1.4945 1.5670 2.4263 18 8 1.1673 0.3997 2.4440 19 6 1.3748 2.4021 3.6750 20 1 0.7265 1.8957 4.3901 21 6 2.7608 2.5976 4.2927 22 17 0.6705 4.0087 3.2584 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.5280 1.3959 -2.0775 29 1 3.3521 3.7065 -2.1011 30 1 5.6931 5.1676 -2.3111 31 1 2.4559 4.0638 2.0963 32 1 3.4091 3.1041 3.5777 33 1 2.6741 3.2013 5.1962 34 1 3.1865 1.6264 4.5446 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396045661.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:20 Heat of formation + Delta-G solvation = -50.640800 kcal Electronic energy + Delta-G solvation = -18169.936643 eV Core-core repulsion = 15285.505900 eV Total energy + Delta-G solvation = -2884.430743 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.12885 -38.85067 -37.25396 -35.92413 -34.35271 -33.38145 -31.32195 -30.72758 -27.10248 -26.21242 -24.06532 -23.41534 -21.75534 -20.78089 -18.98457 -17.32930 -17.08982 -16.56916 -16.33514 -15.85766 -15.53878 -15.52150 -14.66359 -14.43852 -14.00191 -13.87736 -13.68397 -13.41071 -13.23775 -12.91460 -12.82804 -12.78658 -12.60368 -12.36440 -12.06032 -11.92868 -11.84404 -11.65640 -11.48803 -10.98209 -10.85580 -10.16000 -9.37904 -9.24126 -8.60129 -6.28580 -0.00064 0.98273 1.04615 1.40326 1.48926 1.51938 1.85803 2.22863 2.75522 2.92030 3.67685 3.75767 3.84542 4.21158 4.26211 4.40926 4.52961 4.67832 4.70064 4.72467 4.89327 4.99917 5.05592 5.09539 5.17904 5.20207 5.29723 5.41274 5.43002 5.59757 5.88112 6.06480 6.10181 6.25487 6.53956 6.66445 6.95682 6.99246 8.37081 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019134 B = 0.007473 C = 0.005877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.996040 B = 3745.846401 C = 4763.235413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.127 4.127 5 C -0.148 4.148 6 C 0.060 3.940 7 C -0.494 4.494 8 H 0.077 0.923 9 C 0.037 3.963 10 N -0.830 5.830 11 Si 0.975 3.025 12 H -0.259 1.259 13 H -0.270 1.270 14 H -0.264 1.264 15 C -0.164 4.164 16 C -0.161 4.161 17 C 0.401 3.599 18 O -0.460 6.460 19 C -0.042 4.042 20 H 0.145 0.855 21 C -0.154 4.154 22 Cl -0.157 7.157 23 H 0.043 0.957 24 H 0.065 0.935 25 H 0.039 0.961 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.287 0.713 31 H 0.134 0.866 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.024 -2.707 7.136 8.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.107 4.107 3 C -0.141 4.141 4 C -0.145 4.145 5 C -0.168 4.168 6 C 0.058 3.942 7 C -0.524 4.524 8 H 0.095 0.905 9 C -0.177 4.177 10 N -0.457 5.457 11 Si 0.796 3.204 12 H -0.183 1.183 13 H -0.195 1.195 14 H -0.188 1.188 15 C -0.183 4.183 16 C -0.162 4.162 17 C 0.282 3.718 18 O -0.338 6.338 19 C -0.086 4.086 20 H 0.162 0.838 21 C -0.211 4.211 22 Cl -0.131 7.131 23 H 0.062 0.938 24 H 0.084 0.916 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.128 0.872 29 H 0.123 0.877 30 H 0.097 0.903 31 H 0.151 0.849 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.056 -3.222 6.952 8.669 hybrid contribution 0.355 1.020 -0.610 1.240 sum -3.701 -2.202 6.342 7.666 Atomic orbital electron populations 1.21563 0.95021 1.01329 1.00432 1.20462 0.96255 0.92275 1.01697 1.19837 1.04700 0.96779 0.92790 1.20789 1.01020 0.95556 0.97112 1.21591 1.01997 0.94689 0.98524 1.17914 0.91133 0.93863 0.91289 1.19712 1.22429 0.95987 1.14281 0.90487 1.26637 0.93412 1.03907 0.93769 1.69841 1.18228 1.37547 1.20086 0.85356 0.78743 0.77262 0.79027 1.18298 1.19499 1.18810 1.22114 1.04041 0.93812 0.98330 1.19850 1.06502 0.95740 0.94136 1.22634 0.72828 0.87509 0.88866 1.90438 1.39392 1.18235 1.85713 1.24735 1.01302 0.85103 0.97441 0.83771 1.22143 0.91909 1.04643 1.02384 1.98735 1.86057 1.33416 1.94893 0.93767 0.91580 0.94205 0.92203 0.90751 0.87159 0.87687 0.90286 0.84861 0.91799 0.87870 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 9.37 71.98 0.67 -3.52 16 2 C -0.07 -2.56 5.34 29.85 0.16 -2.40 16 3 C -0.14 -6.03 5.21 -19.39 -0.10 -6.13 16 4 C -0.13 -5.81 9.62 22.17 0.21 -5.59 16 5 C -0.15 -7.61 8.69 22.78 0.20 -7.42 16 6 C 0.06 3.11 5.56 -21.33 -0.12 2.99 16 7 C -0.49 -25.68 9.05 23.47 0.21 -25.47 16 8 H 0.08 3.86 7.90 -2.91 -0.02 3.84 16 9 C 0.04 1.81 5.15 85.25 0.44 2.25 16 10 N -0.83 -42.51 10.94 21.82 0.24 -42.27 16 11 Si 0.97 37.60 29.59 68.60 2.03 39.63 16 12 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 13 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 14 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 15 C -0.16 -7.46 7.44 23.07 0.17 -7.29 16 16 C -0.16 -6.85 5.70 -20.20 -0.12 -6.97 16 17 C 0.40 14.30 5.71 28.05 0.16 14.46 16 18 O -0.46 -16.91 12.40 -2.93 -0.04 -16.94 16 19 C -0.04 -1.16 3.49 29.85 0.10 -1.05 16 20 H 0.14 3.21 8.14 -2.39 -0.02 3.19 16 21 C -0.15 -3.70 9.13 71.98 0.66 -3.04 16 22 Cl -0.16 -4.94 24.82 -2.72 -0.07 -5.01 16 23 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 24 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.04 1.41 6.28 -2.39 -0.01 1.39 16 26 H 0.06 2.02 7.96 -2.39 -0.02 2.00 16 27 H 0.07 2.79 5.99 -2.39 -0.01 2.78 16 28 H 0.11 4.54 8.00 -2.91 -0.02 4.52 16 29 H 0.11 5.65 6.15 -2.91 -0.02 5.63 16 30 H 0.29 13.39 8.30 -92.71 -0.77 12.62 16 31 H 0.13 5.60 4.08 -2.91 -0.01 5.59 16 32 H 0.06 1.86 6.43 -2.39 -0.02 1.84 16 33 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -56.78 290.35 5.94 -50.84 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 1.11 Total: 22.92 kcal Atomic # 6 Polarization: -51.83 SS G_CDS: 2.66 Total: -49.18 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.24 Total: -42.27 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.04 Total: -16.94 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Atomic # 17 Polarization: -4.94 SS G_CDS: -0.07 Total: -5.01 kcal Total: -56.78 5.94 -50.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396045661.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.199 kcal (2) G-P(sol) polarization free energy of solvation -56.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds