Wall clock time and date at job start Mon Mar 30 2020 07:20:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.50707 * 109.46943 * 2 1
4 4 C 1.38296 * 119.83518 * 257.09177 * 3 2 1
5 5 C 1.37752 * 120.44433 * 180.02562 * 4 3 2
6 6 C 1.40812 * 120.09869 * 359.95373 * 5 4 3
7 7 C 1.41447 * 120.16488 * 180.30230 * 6 5 4
8 8 H 1.07999 * 119.99632 * 154.76851 * 7 6 5
9 9 C 1.39927 * 119.99858 * 334.76496 * 7 6 5
10 10 N 1.30833 * 120.00343 * 343.16611 * 9 7 6
11 11 Si 1.86804 * 119.99817 * 163.17257 * 9 7 6
12 12 H 1.48494 * 109.47257 * 59.99769 * 11 9 7
13 13 H 1.48507 * 109.47064 * 179.97438 * 11 9 7
14 14 H 1.48506 * 109.47049 * 299.99385 * 11 9 7
15 15 C 1.40423 * 119.66855 * 0.02562 * 6 5 4
16 16 C 1.39335 * 119.56648 * 0.02562 * 15 6 5
17 17 C 1.47210 * 120.05640 * 179.97438 * 16 15 6
18 18 O 1.21246 * 120.00493 * 184.47855 * 17 16 15
19 19 C 1.50703 * 119.99864 * 4.47952 * 17 16 15
20 20 H 1.08999 * 109.47401 * 163.80868 * 19 17 16
21 21 C 1.53000 * 109.47244 * 283.81179 * 19 17 16
22 22 Cl 1.80303 * 109.47228 * 43.81364 * 19 17 16
23 23 H 1.09006 * 109.47454 * 59.99699 * 1 2 3
24 24 H 1.08999 * 109.47243 * 179.97438 * 1 2 3
25 25 H 1.08999 * 109.47214 * 299.99957 * 1 2 3
26 26 H 1.08999 * 109.47214 * 240.00043 * 2 1 3
27 27 H 1.08991 * 109.47098 * 119.99893 * 2 1 3
28 28 H 1.08000 * 119.77641 * 0.02562 * 4 3 2
29 29 H 1.08007 * 119.95291 * 179.97438 * 5 4 3
30 30 H 0.96998 * 119.99791 * 180.02562 * 10 9 7
31 31 H 1.08001 * 120.22096 * 180.02562 * 15 6 5
32 32 H 1.08996 * 109.46920 * 60.00267 * 21 19 17
33 33 H 1.09006 * 109.46964 * 180.02562 * 21 19 17
34 34 H 1.08995 * 109.46830 * 299.99653 * 21 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 6 2.5143 1.9803 -1.1693
5 6 2.9770 3.2777 -1.1835
6 6 2.9612 4.0459 -0.0035
7 6 3.4301 5.3803 -0.0179
8 1 3.0680 6.0878 0.7134
9 6 4.3630 5.7838 -0.9796
10 7 5.0461 4.8878 -1.6447
11 14 4.6332 7.6017 -1.3137
12 1 5.0885 8.2715 -0.0690
13 1 5.6662 7.7630 -2.3684
14 1 3.3601 8.2159 -1.7692
15 6 2.4724 3.4825 1.1862
16 6 2.0088 2.1686 1.1850
17 6 1.4945 1.5670 2.4263
18 8 1.1673 0.3997 2.4440
19 6 1.3748 2.4021 3.6750
20 1 0.7265 1.8957 4.3901
21 6 2.7608 2.5976 4.2927
22 17 0.6705 4.0087 3.2584
23 1 -0.3634 0.5139 -0.8900
24 1 -0.3634 -1.0276 -0.0005
25 1 -0.3633 0.5138 0.8900
26 1 1.8933 -0.5138 -0.8900
27 1 1.8933 -0.5138 0.8899
28 1 2.5280 1.3959 -2.0775
29 1 3.3521 3.7065 -2.1011
30 1 5.6931 5.1676 -2.3111
31 1 2.4559 4.0638 2.0963
32 1 3.4091 3.1041 3.5777
33 1 2.6741 3.2013 5.1962
34 1 3.1865 1.6264 4.5446
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000396045661.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:20:20
Heat of formation + Delta-G solvation = -50.640800 kcal
Electronic energy + Delta-G solvation = -18169.936643 eV
Core-core repulsion = 15285.505900 eV
Total energy + Delta-G solvation = -2884.430743 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 266.081 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-41.12885 -38.85067 -37.25396 -35.92413 -34.35271 -33.38145 -31.32195 -30.72758
-27.10248 -26.21242 -24.06532 -23.41534 -21.75534 -20.78089 -18.98457 -17.32930
-17.08982 -16.56916 -16.33514 -15.85766 -15.53878 -15.52150 -14.66359 -14.43852
-14.00191 -13.87736 -13.68397 -13.41071 -13.23775 -12.91460 -12.82804 -12.78658
-12.60368 -12.36440 -12.06032 -11.92868 -11.84404 -11.65640 -11.48803 -10.98209
-10.85580 -10.16000 -9.37904 -9.24126 -8.60129 -6.28580 -0.00064 0.98273
1.04615 1.40326 1.48926 1.51938 1.85803 2.22863 2.75522 2.92030
3.67685 3.75767 3.84542 4.21158 4.26211 4.40926 4.52961 4.67832
4.70064 4.72467 4.89327 4.99917 5.05592 5.09539 5.17904 5.20207
5.29723 5.41274 5.43002 5.59757 5.88112 6.06480 6.10181 6.25487
6.53956 6.66445 6.95682 6.99246 8.37081
Molecular weight = 266.08amu
Principal moments of inertia in cm(-1)
A = 0.019134 B = 0.007473 C = 0.005877
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1462.996040 B = 3745.846401 C = 4763.235413
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.070 4.070
3 C -0.140 4.140
4 C -0.127 4.127
5 C -0.148 4.148
6 C 0.060 3.940
7 C -0.494 4.494
8 H 0.077 0.923
9 C 0.037 3.963
10 N -0.830 5.830
11 Si 0.975 3.025
12 H -0.259 1.259
13 H -0.270 1.270
14 H -0.264 1.264
15 C -0.164 4.164
16 C -0.161 4.161
17 C 0.401 3.599
18 O -0.460 6.460
19 C -0.042 4.042
20 H 0.145 0.855
21 C -0.154 4.154
22 Cl -0.157 7.157
23 H 0.043 0.957
24 H 0.065 0.935
25 H 0.039 0.961
26 H 0.059 0.941
27 H 0.074 0.926
28 H 0.110 0.890
29 H 0.105 0.895
30 H 0.287 0.713
31 H 0.134 0.866
32 H 0.063 0.937
33 H 0.103 0.897
34 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.024 -2.707 7.136 8.628
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.107 4.107
3 C -0.141 4.141
4 C -0.145 4.145
5 C -0.168 4.168
6 C 0.058 3.942
7 C -0.524 4.524
8 H 0.095 0.905
9 C -0.177 4.177
10 N -0.457 5.457
11 Si 0.796 3.204
12 H -0.183 1.183
13 H -0.195 1.195
14 H -0.188 1.188
15 C -0.183 4.183
16 C -0.162 4.162
17 C 0.282 3.718
18 O -0.338 6.338
19 C -0.086 4.086
20 H 0.162 0.838
21 C -0.211 4.211
22 Cl -0.131 7.131
23 H 0.062 0.938
24 H 0.084 0.916
25 H 0.058 0.942
26 H 0.078 0.922
27 H 0.092 0.908
28 H 0.128 0.872
29 H 0.123 0.877
30 H 0.097 0.903
31 H 0.151 0.849
32 H 0.082 0.918
33 H 0.121 0.879
34 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -4.056 -3.222 6.952 8.669
hybrid contribution 0.355 1.020 -0.610 1.240
sum -3.701 -2.202 6.342 7.666
Atomic orbital electron populations
1.21563 0.95021 1.01329 1.00432 1.20462 0.96255 0.92275 1.01697
1.19837 1.04700 0.96779 0.92790 1.20789 1.01020 0.95556 0.97112
1.21591 1.01997 0.94689 0.98524 1.17914 0.91133 0.93863 0.91289
1.19712 1.22429 0.95987 1.14281 0.90487 1.26637 0.93412 1.03907
0.93769 1.69841 1.18228 1.37547 1.20086 0.85356 0.78743 0.77262
0.79027 1.18298 1.19499 1.18810 1.22114 1.04041 0.93812 0.98330
1.19850 1.06502 0.95740 0.94136 1.22634 0.72828 0.87509 0.88866
1.90438 1.39392 1.18235 1.85713 1.24735 1.01302 0.85103 0.97441
0.83771 1.22143 0.91909 1.04643 1.02384 1.98735 1.86057 1.33416
1.94893 0.93767 0.91580 0.94205 0.92203 0.90751 0.87159 0.87687
0.90286 0.84861 0.91799 0.87870 0.89228
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.19 9.37 71.98 0.67 -3.52 16
2 C -0.07 -2.56 5.34 29.85 0.16 -2.40 16
3 C -0.14 -6.03 5.21 -19.39 -0.10 -6.13 16
4 C -0.13 -5.81 9.62 22.17 0.21 -5.59 16
5 C -0.15 -7.61 8.69 22.78 0.20 -7.42 16
6 C 0.06 3.11 5.56 -21.33 -0.12 2.99 16
7 C -0.49 -25.68 9.05 23.47 0.21 -25.47 16
8 H 0.08 3.86 7.90 -2.91 -0.02 3.84 16
9 C 0.04 1.81 5.15 85.25 0.44 2.25 16
10 N -0.83 -42.51 10.94 21.82 0.24 -42.27 16
11 Si 0.97 37.60 29.59 68.60 2.03 39.63 16
12 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16
13 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16
14 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16
15 C -0.16 -7.46 7.44 23.07 0.17 -7.29 16
16 C -0.16 -6.85 5.70 -20.20 -0.12 -6.97 16
17 C 0.40 14.30 5.71 28.05 0.16 14.46 16
18 O -0.46 -16.91 12.40 -2.93 -0.04 -16.94 16
19 C -0.04 -1.16 3.49 29.85 0.10 -1.05 16
20 H 0.14 3.21 8.14 -2.39 -0.02 3.19 16
21 C -0.15 -3.70 9.13 71.98 0.66 -3.04 16
22 Cl -0.16 -4.94 24.82 -2.72 -0.07 -5.01 16
23 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16
24 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16
25 H 0.04 1.41 6.28 -2.39 -0.01 1.39 16
26 H 0.06 2.02 7.96 -2.39 -0.02 2.00 16
27 H 0.07 2.79 5.99 -2.39 -0.01 2.78 16
28 H 0.11 4.54 8.00 -2.91 -0.02 4.52 16
29 H 0.11 5.65 6.15 -2.91 -0.02 5.63 16
30 H 0.29 13.39 8.30 -92.71 -0.77 12.62 16
31 H 0.13 5.60 4.08 -2.91 -0.01 5.59 16
32 H 0.06 1.86 6.43 -2.39 -0.02 1.84 16
33 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16
34 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16
Total: -1.00 -56.78 290.35 5.94 -50.84
By element:
Atomic # 1 Polarization: 21.81 SS G_CDS: 1.11 Total: 22.92 kcal
Atomic # 6 Polarization: -51.83 SS G_CDS: 2.66 Total: -49.18 kcal
Atomic # 7 Polarization: -42.51 SS G_CDS: 0.24 Total: -42.27 kcal
Atomic # 8 Polarization: -16.91 SS G_CDS: -0.04 Total: -16.94 kcal
Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal
Atomic # 17 Polarization: -4.94 SS G_CDS: -0.07 Total: -5.01 kcal
Total: -56.78 5.94 -50.84 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000396045661.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.199 kcal
(2) G-P(sol) polarization free energy of solvation -56.775 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.576 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.935 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.840 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.641 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds