Wall clock time and date at job start Mon Mar 30 2020 07:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.46678 * 2 1 4 4 C 1.38301 * 119.83176 * 98.64519 * 3 2 1 5 5 C 1.37754 * 120.44633 * 180.02562 * 4 3 2 6 6 C 1.40807 * 120.09301 * 359.96227 * 5 4 3 7 7 C 1.41456 * 120.16348 * 180.29670 * 6 5 4 8 8 H 1.07993 * 119.99990 * 150.63212 * 7 6 5 9 9 C 1.39933 * 119.99708 * 330.63441 * 7 6 5 10 10 N 1.30832 * 119.99767 * 350.00285 * 9 7 6 11 11 Si 1.86795 * 120.00017 * 170.00569 * 9 7 6 12 12 H 1.48510 * 109.46979 * 59.99875 * 11 9 7 13 13 H 1.48498 * 109.47307 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47255 * 300.00064 * 11 9 7 15 15 C 1.40429 * 119.67567 * 0.02562 * 6 5 4 16 16 C 1.39329 * 119.55975 * 359.97438 * 15 6 5 17 17 C 1.47213 * 120.05271 * 179.97438 * 16 15 6 18 18 O 1.21248 * 119.99950 * 185.18193 * 17 16 15 19 19 C 1.50705 * 119.99704 * 5.17372 * 17 16 15 20 20 H 1.08999 * 109.47429 * 35.00965 * 19 17 16 21 21 C 1.52993 * 109.47575 * 275.00098 * 19 17 16 22 22 Cl 1.80306 * 109.46558 * 155.00277 * 19 17 16 23 23 H 1.08998 * 109.47516 * 299.99335 * 1 2 3 24 24 H 1.09004 * 109.47120 * 59.99946 * 1 2 3 25 25 H 1.09002 * 109.46923 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47148 * 240.00753 * 2 1 3 27 27 H 1.08990 * 109.47264 * 120.00137 * 2 1 3 28 28 H 1.08005 * 119.77708 * 0.02604 * 4 3 2 29 29 H 1.07999 * 119.95490 * 179.97438 * 5 4 3 30 30 H 0.97001 * 119.99363 * 180.02562 * 10 9 7 31 31 H 1.07993 * 120.22085 * 179.97438 * 15 6 5 32 32 H 1.08999 * 109.47150 * 60.00172 * 21 19 17 33 33 H 1.08999 * 109.47615 * 180.02562 * 21 19 17 34 34 H 1.09004 * 109.47500 * 300.00392 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.4315 2.0095 1.1861 5 6 2.8922 3.3076 1.2008 6 6 2.9605 4.0461 0.0039 7 6 3.4391 5.3772 0.0163 8 1 3.9341 5.7811 -0.8544 9 6 3.2714 6.1703 1.1568 10 7 2.5067 5.7568 2.1345 11 14 4.1392 7.8196 1.2833 12 1 3.7000 8.6969 0.1684 13 1 3.7994 8.4597 2.5795 14 1 5.6076 7.6139 1.2023 15 6 2.5564 3.4529 -1.2031 16 6 2.0928 2.1390 -1.2018 17 6 1.6659 1.5066 -2.4608 18 8 1.1751 0.3980 -2.4464 19 6 1.8388 2.2373 -3.7675 20 1 2.7538 2.8286 -3.7348 21 6 0.6418 3.1620 -3.9970 22 17 1.9427 1.0432 -5.1145 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 2.3819 1.4475 2.1071 29 1 3.2016 3.7595 2.1316 30 1 2.3902 6.3068 2.9250 31 1 2.6047 4.0113 -2.1262 32 1 0.5789 3.8839 -3.1827 33 1 0.7666 3.6902 -4.9423 34 1 -0.2733 2.5707 -4.0297 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396045662.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:26 Heat of formation + Delta-G solvation = -55.915130 kcal Electronic energy + Delta-G solvation = -17945.064903 eV Core-core repulsion = 15060.405448 eV Total energy + Delta-G solvation = -2884.659455 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.09498 -38.88862 -37.05904 -35.91129 -34.48439 -33.43507 -31.31961 -30.75403 -27.12226 -26.15492 -24.10109 -23.50196 -21.57622 -20.77212 -19.08899 -17.31722 -17.13873 -16.49574 -16.24118 -15.95034 -15.52731 -15.41651 -14.62448 -14.39020 -14.12969 -13.92756 -13.63299 -13.33331 -13.18111 -13.13292 -12.81687 -12.70993 -12.55616 -12.31028 -11.97587 -11.94132 -11.81509 -11.65549 -11.48763 -11.26505 -11.01850 -10.24960 -9.48398 -9.23525 -8.57387 -6.35141 0.04532 0.92762 1.03158 1.42809 1.49148 1.53085 1.77276 2.23691 2.75971 2.93642 3.61464 3.84775 3.96281 4.17539 4.21137 4.32811 4.49514 4.67968 4.69849 4.72691 4.83580 4.96561 4.99371 5.07738 5.12012 5.17685 5.27338 5.39815 5.42309 5.55654 5.82045 6.04021 6.05868 6.22091 6.58568 6.62491 6.93285 6.94703 8.38951 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.020448 B = 0.006191 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.023025 B = 4521.359261 C = 5584.034188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.069 4.069 3 C -0.133 4.133 4 C -0.124 4.124 5 C -0.139 4.139 6 C 0.064 3.936 7 C -0.495 4.495 8 H 0.083 0.917 9 C 0.034 3.966 10 N -0.838 5.838 11 Si 0.980 3.020 12 H -0.259 1.259 13 H -0.274 1.274 14 H -0.262 1.262 15 C -0.171 4.171 16 C -0.155 4.155 17 C 0.394 3.606 18 O -0.451 6.451 19 C -0.043 4.043 20 H 0.137 0.863 21 C -0.146 4.146 22 Cl -0.167 7.167 23 H 0.042 0.958 24 H 0.041 0.959 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.286 0.714 31 H 0.124 0.876 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.145 -2.269 -6.463 6.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.106 4.106 3 C -0.134 4.134 4 C -0.142 4.142 5 C -0.158 4.158 6 C 0.062 3.938 7 C -0.525 4.525 8 H 0.101 0.899 9 C -0.180 4.180 10 N -0.465 5.465 11 Si 0.801 3.199 12 H -0.183 1.183 13 H -0.199 1.199 14 H -0.186 1.186 15 C -0.191 4.191 16 C -0.156 4.156 17 C 0.273 3.727 18 O -0.328 6.328 19 C -0.087 4.087 20 H 0.155 0.845 21 C -0.203 4.203 22 Cl -0.140 7.140 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.131 0.869 29 H 0.126 0.874 30 H 0.096 0.904 31 H 0.142 0.858 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.500 -2.870 -6.340 7.120 hybrid contribution 0.393 0.831 0.440 1.019 sum -1.107 -2.039 -5.900 6.340 Atomic orbital electron populations 1.21542 0.95066 1.01229 1.00416 1.20451 0.96263 0.92250 1.01621 1.19841 1.04702 0.96831 0.92054 1.20834 1.01228 0.95337 0.96827 1.21659 1.01850 0.93012 0.99314 1.17893 0.90758 0.93555 0.91615 1.19773 1.35193 0.96875 1.00678 0.89893 1.26660 0.93570 1.03587 0.94137 1.69815 1.30059 1.39497 1.07171 0.85271 0.79307 0.76807 0.78489 1.18316 1.19879 1.18596 1.21540 1.04783 0.94278 0.98479 1.19821 1.06701 0.95734 0.93318 1.22573 0.74452 0.85933 0.89731 1.90446 1.33556 1.19695 1.89076 1.24645 1.05571 0.92553 0.85913 0.84549 1.22029 0.94876 0.98424 1.05006 1.98712 1.99021 1.64339 1.51953 0.93908 0.94017 0.91800 0.90969 0.92045 0.86937 0.87371 0.90366 0.85781 0.89946 0.88052 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 9.41 71.98 0.68 -3.53 16 2 C -0.07 -2.49 5.32 29.85 0.16 -2.33 16 3 C -0.13 -5.54 5.19 -19.39 -0.10 -5.64 16 4 C -0.12 -5.46 9.62 22.17 0.21 -5.24 16 5 C -0.14 -6.81 8.66 22.78 0.20 -6.62 16 6 C 0.06 3.13 5.54 -21.32 -0.12 3.01 16 7 C -0.50 -24.33 9.06 23.47 0.21 -24.12 16 8 H 0.08 3.84 7.86 -2.91 -0.02 3.81 16 9 C 0.03 1.59 5.26 85.25 0.45 2.04 16 10 N -0.84 -41.72 10.83 21.82 0.24 -41.48 16 11 Si 0.98 36.08 29.57 68.60 2.03 38.11 16 12 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 13 H -0.27 -9.78 7.11 99.48 0.71 -9.08 16 14 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 15 C -0.17 -7.29 8.83 23.07 0.20 -7.09 16 16 C -0.15 -6.28 5.86 -20.20 -0.12 -6.40 16 17 C 0.39 13.95 6.12 28.05 0.17 14.12 16 18 O -0.45 -17.04 11.44 -2.93 -0.03 -17.07 16 19 C -0.04 -1.20 2.95 29.85 0.09 -1.12 16 20 H 0.14 3.55 6.97 -2.39 -0.02 3.53 16 21 C -0.15 -3.52 9.22 71.98 0.66 -2.85 16 22 Cl -0.17 -4.73 28.00 -2.72 -0.08 -4.81 16 23 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.04 1.50 6.52 -2.38 -0.02 1.48 16 25 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.07 2.70 5.96 -2.38 -0.01 2.69 16 27 H 0.06 2.02 8.01 -2.39 -0.02 2.00 16 28 H 0.11 4.44 8.04 -2.91 -0.02 4.42 16 29 H 0.11 5.61 6.21 -2.91 -0.02 5.59 16 30 H 0.29 13.06 8.30 -92.71 -0.77 12.29 16 31 H 0.12 4.59 6.18 -2.91 -0.02 4.58 16 32 H 0.08 2.10 7.53 -2.39 -0.02 2.09 16 33 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -54.02 296.35 5.96 -48.06 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 1.11 Total: 22.95 kcal Atomic # 6 Polarization: -48.45 SS G_CDS: 2.70 Total: -45.76 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.24 Total: -41.48 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.03 Total: -17.07 kcal Atomic # 14 Polarization: 36.08 SS G_CDS: 2.03 Total: 38.11 kcal Atomic # 17 Polarization: -4.73 SS G_CDS: -0.08 Total: -4.81 kcal Total: -54.02 5.96 -48.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396045662.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.856 kcal (2) G-P(sol) polarization free energy of solvation -54.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds