Wall clock time and date at job start Mon Mar 30 2020 07:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47453 * 2 1 4 4 C 1.38657 * 119.87508 * 90.00223 * 3 2 1 5 5 C 1.38613 * 120.49974 * 180.02562 * 4 3 2 6 6 C 1.37637 * 120.25218 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.13077 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47360 * 215.00474 * 7 6 5 9 9 Cl 1.80300 * 109.47206 * 335.00556 * 7 6 5 10 10 C 1.50705 * 109.46828 * 95.00447 * 7 6 5 11 11 C 1.50697 * 119.99598 * 274.99989 * 10 7 6 12 12 O 1.20756 * 119.99824 * 95.00307 * 10 7 6 13 13 C 1.40697 * 119.74178 * 359.97438 * 6 5 4 14 14 C 1.41399 * 120.24779 * 179.97438 * 13 6 5 15 15 H 1.08004 * 119.99427 * 333.57775 * 14 13 6 16 16 C 1.39940 * 120.00492 * 153.57922 * 14 13 6 17 17 N 1.30821 * 119.99848 * 344.22579 * 16 14 13 18 18 Si 1.86799 * 120.00177 * 164.22572 * 16 14 13 19 19 H 1.48510 * 109.46927 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47238 * 119.99953 * 18 16 14 21 21 H 1.48498 * 109.47476 * 240.00286 * 18 16 14 22 22 C 1.37593 * 119.87537 * 270.00575 * 3 2 1 23 23 H 1.09002 * 109.47492 * 59.99779 * 1 2 3 24 24 H 1.09003 * 109.47673 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46645 * 300.00108 * 1 2 3 26 26 H 1.08997 * 109.47069 * 240.00163 * 2 1 3 27 27 H 1.09002 * 109.47492 * 120.00221 * 2 1 3 28 28 H 1.08004 * 119.74829 * 0.27326 * 4 3 2 29 29 H 1.08002 * 119.87470 * 180.02562 * 5 4 3 30 30 H 1.08997 * 109.47146 * 90.00182 * 11 10 7 31 31 H 1.08999 * 109.46932 * 210.00152 * 11 10 7 32 32 H 1.09001 * 109.47514 * 330.00040 * 11 10 7 33 33 H 0.97002 * 119.99864 * 179.97438 * 17 16 14 34 34 H 1.08001 * 120.12818 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0719 1.2023 5 6 2.7242 3.3788 1.2174 6 6 2.9587 4.0452 0.0361 7 6 3.4610 5.4658 0.0558 8 1 3.0293 6.0155 -0.7806 9 17 2.9789 6.2524 1.6048 10 6 4.9634 5.4690 -0.0630 11 6 5.8168 5.3028 1.1679 12 8 5.4833 5.6047 -1.1444 13 6 2.7285 3.3944 -1.1899 14 6 2.9652 4.0689 -2.4098 15 1 2.9035 5.1464 -2.4518 16 6 3.2795 3.3406 -3.5627 17 7 3.6565 2.0917 -3.4649 18 14 3.1608 4.1516 -5.2412 19 1 2.7142 5.5589 -5.0805 20 1 4.4921 4.1262 -5.8986 21 1 2.1809 3.4146 -6.0790 22 6 2.2607 2.0670 -1.1931 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.0848 1.5555 2.1341 29 1 2.9006 3.8762 2.1597 30 1 6.0143 4.2436 1.3328 31 1 6.7601 5.8311 1.0300 32 1 5.2932 5.7134 2.0313 33 1 3.8739 1.5867 -4.2640 34 1 2.0802 1.5581 -2.1284 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396045674.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:15 Heat of formation + Delta-G solvation = -61.099898 kcal Electronic energy + Delta-G solvation = -18118.328473 eV Core-core repulsion = 15233.444189 eV Total energy + Delta-G solvation = -2884.884284 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.70914 -39.48949 -37.06888 -35.91945 -34.84132 -32.21242 -31.53017 -30.41159 -27.97427 -26.88596 -23.95411 -22.99560 -21.33988 -20.40175 -18.85260 -17.43577 -16.97886 -16.78095 -16.53239 -15.82481 -15.72667 -15.16795 -14.61684 -14.46925 -14.33976 -13.71698 -13.56739 -13.39016 -13.20484 -13.10193 -12.94645 -12.78773 -12.55650 -12.33160 -12.18391 -11.88370 -11.82909 -11.58770 -11.27894 -11.06226 -11.00530 -10.58639 -9.28358 -9.06858 -8.64774 -6.36171 0.56553 0.97683 1.16155 1.33082 1.34920 1.45553 1.48180 2.17397 2.71579 3.09217 3.63726 3.99644 4.06343 4.24814 4.29376 4.36197 4.60997 4.64219 4.65484 4.68416 4.86933 4.94809 5.09730 5.10002 5.12868 5.18093 5.35938 5.43641 5.53016 5.71689 5.96084 6.07453 6.24887 6.35590 6.47427 6.68022 6.90202 7.00748 8.29806 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.012196 B = 0.010643 C = 0.006465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.250287 B = 2630.277734 C = 4330.123076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.078 4.078 3 C -0.067 4.067 4 C -0.234 4.234 5 C -0.066 4.066 6 C -0.233 4.233 7 C 0.035 3.965 8 H 0.101 0.899 9 Cl -0.157 7.157 10 C 0.364 3.636 11 C -0.197 4.197 12 O -0.478 6.478 13 C 0.099 3.901 14 C -0.481 4.481 15 H 0.070 0.930 16 C 0.041 3.959 17 N -0.819 5.819 18 Si 0.965 3.035 19 H -0.261 1.261 20 H -0.272 1.272 21 H -0.259 1.259 22 C -0.180 4.180 23 H 0.037 0.963 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.120 0.880 29 H 0.127 0.873 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.286 0.714 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.176 0.974 7.393 7.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.115 4.115 3 C -0.067 4.067 4 C -0.253 4.253 5 C -0.084 4.084 6 C -0.235 4.235 7 C -0.010 4.010 8 H 0.119 0.881 9 Cl -0.130 7.130 10 C 0.241 3.759 11 C -0.254 4.254 12 O -0.352 6.352 13 C 0.096 3.904 14 C -0.510 4.510 15 H 0.088 0.912 16 C -0.174 4.174 17 N -0.445 5.445 18 Si 0.787 3.213 19 H -0.185 1.185 20 H -0.197 1.197 21 H -0.184 1.184 22 C -0.200 4.200 23 H 0.056 0.944 24 H 0.093 0.907 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.138 0.862 29 H 0.145 0.855 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.097 0.903 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.852 0.913 6.801 6.915 hybrid contribution -0.018 0.315 -1.055 1.101 sum -0.871 1.228 5.746 5.940 Atomic orbital electron populations 1.21644 0.94103 1.01995 1.01399 1.20479 0.96754 0.92459 1.01820 1.19958 0.97448 0.96096 0.93225 1.20639 1.12229 0.95904 0.96553 1.20779 0.96880 0.94298 0.96419 1.19218 1.15675 0.94280 0.94296 1.23139 0.95267 0.95205 0.87362 0.88063 1.98643 1.92935 1.82468 1.38950 1.25038 0.90850 0.69005 0.91015 1.22300 1.00817 1.05442 0.96796 1.90410 1.75505 1.37129 1.32198 1.17670 0.88158 0.92610 0.91952 1.19684 1.42932 0.94468 0.93903 0.91221 1.26545 0.91474 0.95057 1.04337 1.69858 1.31758 1.10376 1.32531 0.85395 0.78840 0.79714 0.77329 1.18452 1.19688 1.18377 1.21105 1.05907 0.96329 0.96618 0.94377 0.90742 0.92408 0.92885 0.90359 0.86219 0.85520 0.88055 0.88175 0.87283 0.90328 0.88276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.97 9.89 71.98 0.71 -3.26 16 2 C -0.08 -2.69 6.06 29.85 0.18 -2.51 16 3 C -0.07 -2.87 5.13 -19.92 -0.10 -2.97 16 4 C -0.23 -9.30 9.70 22.46 0.22 -9.09 16 5 C -0.07 -2.63 9.15 22.22 0.20 -2.43 16 6 C -0.23 -10.44 5.06 -19.41 -0.10 -10.54 16 7 C 0.03 1.38 2.89 29.10 0.08 1.46 16 8 H 0.10 4.37 6.49 -2.39 -0.02 4.35 16 9 Cl -0.16 -4.94 24.83 -2.72 -0.07 -5.00 16 10 C 0.36 14.28 6.37 29.10 0.19 14.47 16 11 C -0.20 -5.64 10.11 71.24 0.72 -4.92 16 12 O -0.48 -22.42 17.79 -1.44 -0.03 -22.45 16 13 C 0.10 5.11 5.56 -21.29 -0.12 4.99 16 14 C -0.48 -25.69 8.40 23.46 0.20 -25.49 16 15 H 0.07 3.72 6.37 -2.91 -0.02 3.70 16 16 C 0.04 2.12 5.17 85.26 0.44 2.56 16 17 N -0.82 -43.14 10.97 21.82 0.24 -42.90 16 18 Si 0.97 40.10 29.59 68.60 2.03 42.13 16 19 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 20 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 21 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 22 C -0.18 -9.08 8.32 22.73 0.19 -8.89 16 23 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 25 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 27 H 0.08 2.35 8.08 -2.39 -0.02 2.33 16 28 H 0.12 4.02 8.06 -2.91 -0.02 4.00 16 29 H 0.13 4.34 6.62 -2.91 -0.02 4.32 16 30 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.11 2.66 6.30 -2.39 -0.02 2.65 16 33 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 34 H 0.10 5.34 6.23 -2.91 -0.02 5.32 16 Total: -1.00 -59.42 301.54 6.09 -53.32 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 1.11 Total: 21.52 kcal Atomic # 6 Polarization: -49.43 SS G_CDS: 2.81 Total: -46.62 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.24 Total: -42.90 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.03 Total: -22.45 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Atomic # 17 Polarization: -4.94 SS G_CDS: -0.07 Total: -5.00 kcal Total: -59.42 6.09 -53.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396045674.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.778 kcal (2) G-P(sol) polarization free energy of solvation -59.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds