Wall clock time and date at job start Mon Mar 30 2020 07:20:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.50694 * 109.47478 * 2 1
4 4 C 1.36229 * 119.95950 * 257.34179 * 3 2 1
5 5 C 1.40948 * 119.92295 * 179.74435 * 4 3 2
6 6 C 1.40990 * 120.07717 * 180.24922 * 5 4 3
7 7 H 1.07999 * 120.00449 * 330.63453 * 6 5 4
8 8 C 1.40331 * 119.99564 * 150.64375 * 6 5 4
9 9 N 1.30577 * 120.00422 * 348.13512 * 8 6 5
10 10 Si 1.86797 * 119.99800 * 168.13729 * 8 6 5
11 11 H 1.48502 * 109.47478 * 59.99441 * 10 8 6
12 12 H 1.48499 * 109.47318 * 179.97438 * 10 8 6
13 13 H 1.48504 * 109.47344 * 299.99622 * 10 8 6
14 14 C 1.40985 * 119.84400 * 0.50450 * 5 4 3
15 15 C 1.36194 * 119.91554 * 359.49091 * 14 5 4
16 16 C 1.40300 * 119.96330 * 77.30958 * 3 2 1
17 17 C 1.46860 * 119.92310 * 0.02562 * 16 3 2
18 18 O 1.21313 * 119.99870 * 6.18993 * 17 16 3
19 19 C 1.50693 * 120.00300 * 186.19368 * 17 16 3
20 20 H 1.09001 * 109.47524 * 165.90278 * 19 17 16
21 21 C 1.53005 * 109.47072 * 285.89647 * 19 17 16
22 22 Cl 1.80293 * 109.47311 * 45.89453 * 19 17 16
23 23 H 1.09000 * 109.47705 * 180.02562 * 1 2 3
24 24 H 1.09005 * 109.47277 * 300.00255 * 1 2 3
25 25 H 1.09004 * 109.47066 * 59.99717 * 1 2 3
26 26 H 1.08994 * 109.46809 * 239.99570 * 2 1 3
27 27 H 1.08999 * 109.47176 * 119.99818 * 2 1 3
28 28 H 1.08006 * 120.03809 * 359.97263 * 4 3 2
29 29 H 0.97000 * 120.00592 * 180.02562 * 9 8 6
30 30 H 1.07991 * 120.04029 * 179.77252 * 14 5 4
31 31 H 1.08003 * 119.95528 * 180.25890 * 15 14 5
32 32 H 1.09005 * 109.46894 * 59.99818 * 21 19 17
33 33 H 1.08994 * 109.47470 * 179.97438 * 21 19 17
34 34 H 1.08998 * 109.46909 * 300.00332 * 21 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4207 0.0000
4 6 2.5030 1.9759 -1.1516
5 6 2.9677 3.3066 -1.1519
6 6 3.4506 3.8861 -2.3430
7 1 3.9094 3.2653 -3.0983
8 6 3.3353 5.2697 -2.5470
9 7 2.5839 5.9861 -1.7551
10 14 4.2567 6.0866 -3.9517
11 1 3.8177 5.4959 -5.2415
12 1 3.9688 7.5434 -3.9516
13 1 5.7156 5.8699 -3.7791
14 6 2.9536 4.0550 0.0428
15 6 2.4816 3.4936 1.1904
16 6 2.0143 2.1704 1.1858
17 6 1.5060 1.5686 2.4253
18 8 1.2078 0.3929 2.4509
19 6 1.3548 2.4114 3.6653
20 1 0.7439 1.8789 4.3943
21 6 2.7350 2.6906 4.2636
22 17 0.5581 3.9714 3.2383
23 1 -0.3634 -1.0276 0.0005
24 1 -0.3634 0.5139 0.8900
25 1 -0.3633 0.5139 -0.8900
26 1 1.8932 -0.5139 -0.8899
27 1 1.8933 -0.5138 0.8900
28 1 2.5166 1.3982 -2.0641
29 1 2.5039 6.9424 -1.8963
30 1 3.3123 5.0735 0.0470
31 1 2.4665 4.0677 2.1051
32 1 3.3461 3.2230 3.5346
33 1 2.6258 3.3006 5.1602
34 1 3.2167 1.7475 4.5217
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000396046299.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:20:30
Heat of formation + Delta-G solvation = -44.233595 kcal
Electronic energy + Delta-G solvation = -18109.034597 eV
Core-core repulsion = 15224.881691 eV
Total energy + Delta-G solvation = -2884.152906 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 266.081 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-39.30345 -37.10308 -35.83169 -34.24098 -33.01309 -31.89779 -29.98632 -28.28683
-26.25580 -24.25857 -22.76240 -21.44585 -20.14998 -18.88167 -17.11024 -16.03205
-15.64495 -15.07187 -14.48586 -14.13288 -13.99074 -13.80676 -13.03785 -12.74652
-12.45451 -12.19485 -12.13097 -11.93445 -11.84456 -11.50283 -11.38162 -11.25169
-11.04590 -10.81457 -10.59810 -10.39136 -10.26783 -10.06715 -9.89026 -9.42815
-9.19797 -8.44852 -7.59840 -7.40427 -7.01090 -4.64581 1.77470 2.47922
2.89784 2.93171 2.95741 3.05823 3.55094 3.73124 4.47300 4.61191
5.05608 5.11725 5.48164 5.65186 5.78752 5.80516 5.86022 6.09244
6.22847 6.29155 6.41806 6.45116 6.57552 6.76959 6.79723 6.84417
6.96135 7.05055 7.20036 7.46766 7.74202 7.82443 7.89382 8.08193
8.40131 8.45040 8.60269 8.75066 9.89027
Molecular weight = 266.08amu
Principal moments of inertia in cm(-1)
A = 0.021341 B = 0.006676 C = 0.005546
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1311.733658 B = 4192.909540 C = 5047.651218
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.088 4.088
3 C 0.015 3.985
4 C -0.239 4.239
5 C 0.139 3.861
6 C -0.439 4.439
7 H 0.084 0.916
8 C 0.072 3.928
9 N -0.770 5.770
10 Si 0.916 3.084
11 H -0.262 1.262
12 H -0.275 1.275
13 H -0.261 1.261
14 C -0.181 4.181
15 C -0.050 4.050
16 C -0.302 4.302
17 C 0.396 3.604
18 O -0.488 6.488
19 C -0.046 4.046
20 H 0.109 0.891
21 C -0.154 4.154
22 Cl -0.156 7.156
23 H 0.042 0.958
24 H 0.054 0.946
25 H 0.044 0.956
26 H 0.048 0.952
27 H 0.087 0.913
28 H 0.097 0.903
29 H 0.288 0.712
30 H 0.118 0.882
31 H 0.109 0.891
32 H 0.082 0.918
33 H 0.070 0.930
34 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.202 -1.592 5.742 5.962
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C -0.125 4.125
3 C 0.014 3.986
4 C -0.258 4.258
5 C 0.135 3.865
6 C -0.467 4.467
7 H 0.102 0.898
8 C -0.149 4.149
9 N -0.393 5.393
10 Si 0.739 3.261
11 H -0.187 1.187
12 H -0.200 1.200
13 H -0.185 1.185
14 C -0.200 4.200
15 C -0.069 4.069
16 C -0.304 4.304
17 C 0.283 3.717
18 O -0.371 6.371
19 C -0.091 4.091
20 H 0.127 0.873
21 C -0.211 4.211
22 Cl -0.129 7.129
23 H 0.061 0.939
24 H 0.074 0.926
25 H 0.063 0.937
26 H 0.067 0.933
27 H 0.105 0.895
28 H 0.115 0.885
29 H 0.099 0.901
30 H 0.136 0.864
31 H 0.126 0.874
32 H 0.100 0.900
33 H 0.089 0.911
34 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -0.108 -1.804 5.769 6.046
hybrid contribution 0.202 0.804 -0.639 1.046
sum 0.094 -1.001 5.130 5.228
Atomic orbital electron populations
1.21549 0.95737 1.00058 1.01319 1.20698 0.95835 0.94306 1.01701
1.19301 0.93265 0.93606 0.92407 1.20629 1.11072 0.97711 0.96405
1.17840 0.85249 0.90693 0.92697 1.19864 1.32032 0.92303 1.02490
0.89768 1.26112 0.93539 0.97562 0.97702 1.69689 1.26915 1.08641
1.34099 0.86229 0.80777 0.78147 0.80933 1.18664 1.19995 1.18488
1.21006 1.06602 1.00834 0.91597 1.21076 0.94845 0.92874 0.98084
1.19050 1.21051 0.96899 0.93425 1.21977 0.74444 0.87386 0.87930
1.90414 1.43716 1.17688 1.85263 1.24700 0.97840 0.86802 0.99758
0.87320 1.22111 0.94062 1.03152 1.01812 1.98723 1.82630 1.36879
1.94703 0.93889 0.92647 0.93726 0.93300 0.89501 0.88529 0.90105
0.86396 0.87362 0.89954 0.91102 0.90809
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.43 9.40 37.16 0.35 -2.08 16
2 C -0.09 -1.77 5.34 -27.89 -0.15 -1.92 16
3 C 0.01 0.33 5.15 -104.57 -0.54 -0.20 16
4 C -0.24 -5.71 9.34 -39.28 -0.37 -6.08 16
5 C 0.14 3.50 5.54 -106.79 -0.59 2.90 16
6 C -0.44 -10.85 9.04 -37.75 -0.34 -11.19 16
7 H 0.08 1.98 7.88 -52.49 -0.41 1.56 16
8 C 0.07 1.68 5.22 -17.30 -0.09 1.59 16
9 N -0.77 -18.53 10.94 55.57 0.61 -17.92 16
10 Si 0.92 17.26 29.58 -169.99 -5.03 12.23 16
11 H -0.26 -4.92 7.11 56.52 0.40 -4.51 16
12 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16
13 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16
14 C -0.18 -4.43 8.59 -39.28 -0.34 -4.77 16
15 C -0.05 -1.11 7.59 -39.53 -0.30 -1.41 16
16 C -0.30 -6.64 5.71 -104.85 -0.60 -7.23 16
17 C 0.40 7.77 5.66 -30.83 -0.17 7.59 16
18 O -0.49 -10.11 12.50 5.53 0.07 -10.04 16
19 C -0.05 -0.73 3.49 -27.88 -0.10 -0.83 16
20 H 0.11 1.54 8.13 -51.93 -0.42 1.12 16
21 C -0.15 -2.06 9.10 37.16 0.34 -1.72 16
22 Cl -0.16 -2.65 25.15 -51.86 -1.30 -3.95 16
23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16
24 H 0.05 1.11 6.37 -51.93 -0.33 0.78 16
25 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16
26 H 0.05 0.90 7.95 -51.93 -0.41 0.49 16
27 H 0.09 1.78 5.93 -51.93 -0.31 1.47 16
28 H 0.10 2.19 7.99 -52.48 -0.42 1.77 16
29 H 0.29 6.27 8.29 -40.82 -0.34 5.93 16
30 H 0.12 2.95 6.31 -52.49 -0.33 2.62 16
31 H 0.11 2.16 4.07 -52.48 -0.21 1.94 16
32 H 0.08 1.20 6.03 -51.93 -0.31 0.89 16
33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
LS Contribution 290.17 15.07 4.37 4.37
Total: -1.00 -26.01 290.17 -8.17 -34.18
By element:
Atomic # 1 Polarization: 10.46 SS G_CDS: -3.99 Total: 6.47 kcal
Atomic # 6 Polarization: -22.44 SS G_CDS: -2.90 Total: -25.34 kcal
Atomic # 7 Polarization: -18.53 SS G_CDS: 0.61 Total: -17.92 kcal
Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.04 kcal
Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.23 kcal
Atomic # 17 Polarization: -2.65 SS G_CDS: -1.30 Total: -3.95 kcal
Total LS contribution 4.37 Total: 4.37 kcal
Total: -26.01 -8.17 -34.18 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000396046299.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.055 kcal
(2) G-P(sol) polarization free energy of solvation -26.010 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.065 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.179 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.234 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds