Wall clock time and date at job start Mon Mar 30 2020 07:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.47478 * 2 1 4 4 C 1.36229 * 119.95950 * 257.34179 * 3 2 1 5 5 C 1.40948 * 119.92295 * 179.74435 * 4 3 2 6 6 C 1.40990 * 120.07717 * 180.24922 * 5 4 3 7 7 H 1.07999 * 120.00449 * 330.63453 * 6 5 4 8 8 C 1.40331 * 119.99564 * 150.64375 * 6 5 4 9 9 N 1.30577 * 120.00422 * 348.13512 * 8 6 5 10 10 Si 1.86797 * 119.99800 * 168.13729 * 8 6 5 11 11 H 1.48502 * 109.47478 * 59.99441 * 10 8 6 12 12 H 1.48499 * 109.47318 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47344 * 299.99622 * 10 8 6 14 14 C 1.40985 * 119.84400 * 0.50450 * 5 4 3 15 15 C 1.36194 * 119.91554 * 359.49091 * 14 5 4 16 16 C 1.40300 * 119.96330 * 77.30958 * 3 2 1 17 17 C 1.46860 * 119.92310 * 0.02562 * 16 3 2 18 18 O 1.21313 * 119.99870 * 6.18993 * 17 16 3 19 19 C 1.50693 * 120.00300 * 186.19368 * 17 16 3 20 20 H 1.09001 * 109.47524 * 165.90278 * 19 17 16 21 21 C 1.53005 * 109.47072 * 285.89647 * 19 17 16 22 22 Cl 1.80293 * 109.47311 * 45.89453 * 19 17 16 23 23 H 1.09000 * 109.47705 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47277 * 300.00255 * 1 2 3 25 25 H 1.09004 * 109.47066 * 59.99717 * 1 2 3 26 26 H 1.08994 * 109.46809 * 239.99570 * 2 1 3 27 27 H 1.08999 * 109.47176 * 119.99818 * 2 1 3 28 28 H 1.08006 * 120.03809 * 359.97263 * 4 3 2 29 29 H 0.97000 * 120.00592 * 180.02562 * 9 8 6 30 30 H 1.07991 * 120.04029 * 179.77252 * 14 5 4 31 31 H 1.08003 * 119.95528 * 180.25890 * 15 14 5 32 32 H 1.09005 * 109.46894 * 59.99818 * 21 19 17 33 33 H 1.08994 * 109.47470 * 179.97438 * 21 19 17 34 34 H 1.08998 * 109.46909 * 300.00332 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.5030 1.9759 -1.1516 5 6 2.9677 3.3066 -1.1519 6 6 3.4506 3.8861 -2.3430 7 1 3.9094 3.2653 -3.0983 8 6 3.3353 5.2697 -2.5470 9 7 2.5839 5.9861 -1.7551 10 14 4.2567 6.0866 -3.9517 11 1 3.8177 5.4959 -5.2415 12 1 3.9688 7.5434 -3.9516 13 1 5.7156 5.8699 -3.7791 14 6 2.9536 4.0550 0.0428 15 6 2.4816 3.4936 1.1904 16 6 2.0143 2.1704 1.1858 17 6 1.5060 1.5686 2.4253 18 8 1.2078 0.3929 2.4509 19 6 1.3548 2.4114 3.6653 20 1 0.7439 1.8789 4.3943 21 6 2.7350 2.6906 4.2636 22 17 0.5581 3.9714 3.2383 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8932 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.5166 1.3982 -2.0641 29 1 2.5039 6.9424 -1.8963 30 1 3.3123 5.0735 0.0470 31 1 2.4665 4.0677 2.1051 32 1 3.3461 3.2230 3.5346 33 1 2.6258 3.3006 5.1602 34 1 3.2167 1.7475 4.5217 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396046299.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:30 Heat of formation + Delta-G solvation = -44.233595 kcal Electronic energy + Delta-G solvation = -18109.034597 eV Core-core repulsion = 15224.881691 eV Total energy + Delta-G solvation = -2884.152906 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.30345 -37.10308 -35.83169 -34.24098 -33.01309 -31.89779 -29.98632 -28.28683 -26.25580 -24.25857 -22.76240 -21.44585 -20.14998 -18.88167 -17.11024 -16.03205 -15.64495 -15.07187 -14.48586 -14.13288 -13.99074 -13.80676 -13.03785 -12.74652 -12.45451 -12.19485 -12.13097 -11.93445 -11.84456 -11.50283 -11.38162 -11.25169 -11.04590 -10.81457 -10.59810 -10.39136 -10.26783 -10.06715 -9.89026 -9.42815 -9.19797 -8.44852 -7.59840 -7.40427 -7.01090 -4.64581 1.77470 2.47922 2.89784 2.93171 2.95741 3.05823 3.55094 3.73124 4.47300 4.61191 5.05608 5.11725 5.48164 5.65186 5.78752 5.80516 5.86022 6.09244 6.22847 6.29155 6.41806 6.45116 6.57552 6.76959 6.79723 6.84417 6.96135 7.05055 7.20036 7.46766 7.74202 7.82443 7.89382 8.08193 8.40131 8.45040 8.60269 8.75066 9.89027 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.006676 C = 0.005546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.733658 B = 4192.909540 C = 5047.651218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.088 4.088 3 C 0.015 3.985 4 C -0.239 4.239 5 C 0.139 3.861 6 C -0.439 4.439 7 H 0.084 0.916 8 C 0.072 3.928 9 N -0.770 5.770 10 Si 0.916 3.084 11 H -0.262 1.262 12 H -0.275 1.275 13 H -0.261 1.261 14 C -0.181 4.181 15 C -0.050 4.050 16 C -0.302 4.302 17 C 0.396 3.604 18 O -0.488 6.488 19 C -0.046 4.046 20 H 0.109 0.891 21 C -0.154 4.154 22 Cl -0.156 7.156 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.044 0.956 26 H 0.048 0.952 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.288 0.712 30 H 0.118 0.882 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.202 -1.592 5.742 5.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.125 4.125 3 C 0.014 3.986 4 C -0.258 4.258 5 C 0.135 3.865 6 C -0.467 4.467 7 H 0.102 0.898 8 C -0.149 4.149 9 N -0.393 5.393 10 Si 0.739 3.261 11 H -0.187 1.187 12 H -0.200 1.200 13 H -0.185 1.185 14 C -0.200 4.200 15 C -0.069 4.069 16 C -0.304 4.304 17 C 0.283 3.717 18 O -0.371 6.371 19 C -0.091 4.091 20 H 0.127 0.873 21 C -0.211 4.211 22 Cl -0.129 7.129 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.105 0.895 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.136 0.864 31 H 0.126 0.874 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.108 -1.804 5.769 6.046 hybrid contribution 0.202 0.804 -0.639 1.046 sum 0.094 -1.001 5.130 5.228 Atomic orbital electron populations 1.21549 0.95737 1.00058 1.01319 1.20698 0.95835 0.94306 1.01701 1.19301 0.93265 0.93606 0.92407 1.20629 1.11072 0.97711 0.96405 1.17840 0.85249 0.90693 0.92697 1.19864 1.32032 0.92303 1.02490 0.89768 1.26112 0.93539 0.97562 0.97702 1.69689 1.26915 1.08641 1.34099 0.86229 0.80777 0.78147 0.80933 1.18664 1.19995 1.18488 1.21006 1.06602 1.00834 0.91597 1.21076 0.94845 0.92874 0.98084 1.19050 1.21051 0.96899 0.93425 1.21977 0.74444 0.87386 0.87930 1.90414 1.43716 1.17688 1.85263 1.24700 0.97840 0.86802 0.99758 0.87320 1.22111 0.94062 1.03152 1.01812 1.98723 1.82630 1.36879 1.94703 0.93889 0.92647 0.93726 0.93300 0.89501 0.88529 0.90105 0.86396 0.87362 0.89954 0.91102 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 9.40 37.16 0.35 -2.08 16 2 C -0.09 -1.77 5.34 -27.89 -0.15 -1.92 16 3 C 0.01 0.33 5.15 -104.57 -0.54 -0.20 16 4 C -0.24 -5.71 9.34 -39.28 -0.37 -6.08 16 5 C 0.14 3.50 5.54 -106.79 -0.59 2.90 16 6 C -0.44 -10.85 9.04 -37.75 -0.34 -11.19 16 7 H 0.08 1.98 7.88 -52.49 -0.41 1.56 16 8 C 0.07 1.68 5.22 -17.30 -0.09 1.59 16 9 N -0.77 -18.53 10.94 55.57 0.61 -17.92 16 10 Si 0.92 17.26 29.58 -169.99 -5.03 12.23 16 11 H -0.26 -4.92 7.11 56.52 0.40 -4.51 16 12 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 13 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 14 C -0.18 -4.43 8.59 -39.28 -0.34 -4.77 16 15 C -0.05 -1.11 7.59 -39.53 -0.30 -1.41 16 16 C -0.30 -6.64 5.71 -104.85 -0.60 -7.23 16 17 C 0.40 7.77 5.66 -30.83 -0.17 7.59 16 18 O -0.49 -10.11 12.50 5.53 0.07 -10.04 16 19 C -0.05 -0.73 3.49 -27.88 -0.10 -0.83 16 20 H 0.11 1.54 8.13 -51.93 -0.42 1.12 16 21 C -0.15 -2.06 9.10 37.16 0.34 -1.72 16 22 Cl -0.16 -2.65 25.15 -51.86 -1.30 -3.95 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 1.11 6.37 -51.93 -0.33 0.78 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.90 7.95 -51.93 -0.41 0.49 16 27 H 0.09 1.78 5.93 -51.93 -0.31 1.47 16 28 H 0.10 2.19 7.99 -52.48 -0.42 1.77 16 29 H 0.29 6.27 8.29 -40.82 -0.34 5.93 16 30 H 0.12 2.95 6.31 -52.49 -0.33 2.62 16 31 H 0.11 2.16 4.07 -52.48 -0.21 1.94 16 32 H 0.08 1.20 6.03 -51.93 -0.31 0.89 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 290.17 15.07 4.37 4.37 Total: -1.00 -26.01 290.17 -8.17 -34.18 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -3.99 Total: 6.47 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -2.90 Total: -25.34 kcal Atomic # 7 Polarization: -18.53 SS G_CDS: 0.61 Total: -17.92 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.04 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.23 kcal Atomic # 17 Polarization: -2.65 SS G_CDS: -1.30 Total: -3.95 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.01 -8.17 -34.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396046299.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.055 kcal (2) G-P(sol) polarization free energy of solvation -26.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds