Wall clock time and date at job start Mon Mar 30 2020 07:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.47478 * 2 1 4 4 C 1.36229 * 119.95950 * 257.34179 * 3 2 1 5 5 C 1.40948 * 119.92295 * 179.74435 * 4 3 2 6 6 C 1.40990 * 120.07717 * 180.24922 * 5 4 3 7 7 H 1.07999 * 120.00449 * 330.63453 * 6 5 4 8 8 C 1.40331 * 119.99564 * 150.64375 * 6 5 4 9 9 N 1.30577 * 120.00422 * 348.13512 * 8 6 5 10 10 Si 1.86797 * 119.99800 * 168.13729 * 8 6 5 11 11 H 1.48502 * 109.47478 * 59.99441 * 10 8 6 12 12 H 1.48499 * 109.47318 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47344 * 299.99622 * 10 8 6 14 14 C 1.40985 * 119.84400 * 0.50450 * 5 4 3 15 15 C 1.36194 * 119.91554 * 359.49091 * 14 5 4 16 16 C 1.40300 * 119.96330 * 77.30958 * 3 2 1 17 17 C 1.46860 * 119.92310 * 0.02562 * 16 3 2 18 18 O 1.21313 * 119.99870 * 6.18993 * 17 16 3 19 19 C 1.50693 * 120.00300 * 186.19368 * 17 16 3 20 20 H 1.09001 * 109.47524 * 165.90278 * 19 17 16 21 21 C 1.53005 * 109.47072 * 285.89647 * 19 17 16 22 22 Cl 1.80293 * 109.47311 * 45.89453 * 19 17 16 23 23 H 1.09000 * 109.47705 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47277 * 300.00255 * 1 2 3 25 25 H 1.09004 * 109.47066 * 59.99717 * 1 2 3 26 26 H 1.08994 * 109.46809 * 239.99570 * 2 1 3 27 27 H 1.08999 * 109.47176 * 119.99818 * 2 1 3 28 28 H 1.08006 * 120.03809 * 359.97263 * 4 3 2 29 29 H 0.97000 * 120.00592 * 180.02562 * 9 8 6 30 30 H 1.07991 * 120.04029 * 179.77252 * 14 5 4 31 31 H 1.08003 * 119.95528 * 180.25890 * 15 14 5 32 32 H 1.09005 * 109.46894 * 59.99818 * 21 19 17 33 33 H 1.08994 * 109.47470 * 179.97438 * 21 19 17 34 34 H 1.08998 * 109.46909 * 300.00332 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.5030 1.9759 -1.1516 5 6 2.9677 3.3066 -1.1519 6 6 3.4506 3.8861 -2.3430 7 1 3.9094 3.2653 -3.0983 8 6 3.3353 5.2697 -2.5470 9 7 2.5839 5.9861 -1.7551 10 14 4.2567 6.0866 -3.9517 11 1 3.8177 5.4959 -5.2415 12 1 3.9688 7.5434 -3.9516 13 1 5.7156 5.8699 -3.7791 14 6 2.9536 4.0550 0.0428 15 6 2.4816 3.4936 1.1904 16 6 2.0143 2.1704 1.1858 17 6 1.5060 1.5686 2.4253 18 8 1.2078 0.3929 2.4509 19 6 1.3548 2.4114 3.6653 20 1 0.7439 1.8789 4.3943 21 6 2.7350 2.6906 4.2636 22 17 0.5581 3.9714 3.2383 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8932 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.5166 1.3982 -2.0641 29 1 2.5039 6.9424 -1.8963 30 1 3.3123 5.0735 0.0470 31 1 2.4665 4.0677 2.1051 32 1 3.3461 3.2230 3.5346 33 1 2.6258 3.3006 5.1602 34 1 3.2167 1.7475 4.5217 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396046299.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:30 Heat of formation + Delta-G solvation = -55.405529 kcal Electronic energy + Delta-G solvation = -18109.519048 eV Core-core repulsion = 15224.881691 eV Total energy + Delta-G solvation = -2884.637357 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.96009 -38.83548 -37.19117 -35.97577 -34.56984 -33.37476 -31.68607 -29.99985 -27.96525 -25.70506 -24.34136 -23.16750 -21.85872 -20.48998 -18.90559 -17.63256 -17.28570 -16.61924 -16.07678 -15.68748 -15.46716 -15.37254 -14.61924 -14.43813 -13.99733 -13.83141 -13.64747 -13.44872 -13.15929 -13.06938 -12.90712 -12.79350 -12.56091 -12.35294 -12.15388 -12.00339 -11.80955 -11.62933 -11.47254 -11.13171 -10.84736 -10.04225 -9.41123 -9.21856 -8.74850 -6.50544 0.13566 1.04646 1.21645 1.37742 1.42722 1.50318 1.93047 2.15781 2.73310 3.14040 3.63465 3.84892 3.91303 4.17183 4.23959 4.47725 4.59254 4.64988 4.75056 4.79437 4.85541 4.98467 5.00802 5.06667 5.12872 5.15489 5.28041 5.38948 5.44532 5.67138 5.92976 6.00404 6.08803 6.28193 6.58368 6.77749 6.79906 6.92392 8.18315 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.006676 C = 0.005546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.733658 B = 4192.909540 C = 5047.651218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.085 4.085 3 C 0.004 3.996 4 C -0.258 4.258 5 C 0.113 3.887 6 C -0.475 4.475 7 H 0.084 0.916 8 C 0.036 3.964 9 N -0.802 5.802 10 Si 0.988 3.012 11 H -0.259 1.259 12 H -0.265 1.265 13 H -0.257 1.257 14 C -0.205 4.205 15 C -0.041 4.041 16 C -0.312 4.312 17 C 0.399 3.601 18 O -0.493 6.493 19 C -0.040 4.040 20 H 0.135 0.865 21 C -0.152 4.152 22 Cl -0.166 7.166 23 H 0.069 0.931 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.295 0.705 30 H 0.105 0.895 31 H 0.130 0.870 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.152 -1.860 6.720 6.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.122 4.122 3 C 0.003 3.997 4 C -0.278 4.278 5 C 0.110 3.890 6 C -0.503 4.503 7 H 0.102 0.898 8 C -0.183 4.183 9 N -0.426 5.426 10 Si 0.807 3.193 11 H -0.183 1.183 12 H -0.189 1.189 13 H -0.181 1.181 14 C -0.224 4.224 15 C -0.059 4.059 16 C -0.314 4.314 17 C 0.285 3.715 18 O -0.376 6.376 19 C -0.084 4.084 20 H 0.153 0.847 21 C -0.209 4.209 22 Cl -0.140 7.140 23 H 0.088 0.912 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.123 0.877 31 H 0.147 0.853 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.167 -2.087 6.762 7.079 hybrid contribution 0.153 0.766 -0.811 1.126 sum -0.014 -1.321 5.951 6.096 Atomic orbital electron populations 1.21495 0.94650 1.01553 1.00369 1.20707 0.96674 0.92643 1.02196 1.19696 0.92647 0.95050 0.92302 1.20761 1.12082 0.97698 0.97208 1.18166 0.85964 0.91519 0.93393 1.20109 1.33704 0.93627 1.02831 0.89752 1.26933 0.93763 0.97455 1.00131 1.69734 1.27857 1.09257 1.35759 0.85159 0.79290 0.77361 0.77461 1.18319 1.18902 1.18083 1.20998 1.08394 1.00597 0.92448 1.21277 0.93434 0.93091 0.98113 1.19454 1.20489 0.96861 0.94639 1.22172 0.73336 0.87548 0.88431 1.90409 1.43350 1.18249 1.85598 1.24734 0.99890 0.85816 0.97993 0.84736 1.22150 0.92055 1.04286 1.02383 1.98731 1.82880 1.37519 1.94825 0.91184 0.94064 0.94128 0.92100 0.89656 0.88375 0.89366 0.87672 0.85280 0.91449 0.88168 0.89412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.46 9.40 71.98 0.68 -3.78 16 2 C -0.09 -3.33 5.34 29.85 0.16 -3.17 16 3 C 0.00 0.16 5.15 -19.83 -0.10 0.06 16 4 C -0.26 -12.68 9.34 22.47 0.21 -12.47 16 5 C 0.11 5.89 5.54 -21.27 -0.12 5.77 16 6 C -0.48 -24.29 9.04 23.45 0.21 -24.08 16 7 H 0.08 4.12 7.88 -2.91 -0.02 4.09 16 8 C 0.04 1.68 5.22 85.39 0.45 2.13 16 9 N -0.80 -39.48 10.94 21.89 0.24 -39.24 16 10 Si 0.99 35.51 29.58 68.60 2.03 37.54 16 11 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 12 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 13 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 14 C -0.21 -10.34 8.59 22.47 0.19 -10.14 16 15 C -0.04 -1.81 7.59 22.30 0.17 -1.64 16 16 C -0.31 -13.59 5.71 -20.01 -0.11 -13.70 16 17 C 0.40 14.94 5.66 27.94 0.16 15.10 16 18 O -0.49 -19.42 12.50 -3.13 -0.04 -19.46 16 19 C -0.04 -1.16 3.49 29.85 0.10 -1.06 16 20 H 0.13 3.30 8.13 -2.39 -0.02 3.28 16 21 C -0.15 -3.59 9.10 71.98 0.66 -2.94 16 22 Cl -0.17 -5.34 25.15 -2.72 -0.07 -5.41 16 23 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.04 1.58 6.37 -2.38 -0.02 1.57 16 25 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.06 2.20 7.95 -2.39 -0.02 2.18 16 27 H 0.09 3.37 5.93 -2.39 -0.01 3.35 16 28 H 0.10 4.61 7.99 -2.91 -0.02 4.59 16 29 H 0.30 13.05 8.29 -92.71 -0.77 12.28 16 30 H 0.11 5.48 6.31 -2.92 -0.02 5.46 16 31 H 0.13 5.07 4.07 -2.91 -0.01 5.06 16 32 H 0.07 1.82 6.03 -2.38 -0.01 1.80 16 33 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -56.49 290.17 5.93 -50.56 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 1.12 Total: 25.91 kcal Atomic # 6 Polarization: -52.55 SS G_CDS: 2.65 Total: -49.90 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.24 Total: -39.24 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.04 Total: -19.46 kcal Atomic # 14 Polarization: 35.51 SS G_CDS: 2.03 Total: 37.54 kcal Atomic # 17 Polarization: -5.34 SS G_CDS: -0.07 Total: -5.41 kcal Total: -56.49 5.93 -50.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396046299.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.846 kcal (2) G-P(sol) polarization free energy of solvation -56.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds