Wall clock time and date at job start Mon Mar 30 2020 07:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47023 * 2 1 4 4 C 1.36233 * 119.95945 * 260.97689 * 3 2 1 5 5 C 1.40939 * 119.92176 * 179.74791 * 4 3 2 6 6 C 1.40986 * 120.07962 * 180.27819 * 5 4 3 7 7 H 1.07995 * 120.00214 * 25.74215 * 6 5 4 8 8 C 1.40336 * 120.00385 * 205.74365 * 6 5 4 9 9 N 1.30585 * 119.99830 * 16.72902 * 8 6 5 10 10 Si 1.86797 * 120.00160 * 196.73632 * 8 6 5 11 11 H 1.48499 * 109.47262 * 60.00007 * 10 8 6 12 12 H 1.48505 * 109.47100 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47249 * 299.99760 * 10 8 6 14 14 C 1.40981 * 119.84460 * 0.48878 * 5 4 3 15 15 C 1.36194 * 119.92403 * 359.48966 * 14 5 4 16 16 C 1.40290 * 119.96285 * 80.96018 * 3 2 1 17 17 C 1.46870 * 119.92303 * 359.97438 * 16 3 2 18 18 O 1.21312 * 119.99863 * 356.22958 * 17 16 3 19 19 C 1.50700 * 119.99750 * 176.22464 * 17 16 3 20 20 H 1.08993 * 109.47409 * 35.00569 * 19 17 16 21 21 C 1.52998 * 109.47235 * 274.99923 * 19 17 16 22 22 Cl 1.80304 * 109.46580 * 155.00432 * 19 17 16 23 23 H 1.08995 * 109.47626 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47225 * 300.00427 * 1 2 3 25 25 H 1.09002 * 109.47308 * 59.99989 * 1 2 3 26 26 H 1.08993 * 109.47008 * 239.99964 * 2 1 3 27 27 H 1.09000 * 109.46807 * 119.99883 * 2 1 3 28 28 H 1.08000 * 120.03642 * 359.97438 * 4 3 2 29 29 H 0.96998 * 120.00156 * 179.97438 * 9 8 6 30 30 H 1.08002 * 120.04452 * 179.76671 * 14 5 4 31 31 H 1.07998 * 119.96510 * 180.26144 * 15 14 5 32 32 H 1.08997 * 109.47199 * 60.00683 * 21 19 17 33 33 H 1.09002 * 109.47321 * 180.02562 * 21 19 17 34 34 H 1.08998 * 109.47672 * 300.00183 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4336 2.0005 -1.1657 5 6 2.8982 3.3311 -1.1656 6 6 3.3088 3.9363 -2.3710 7 1 2.9083 3.5907 -3.3125 8 6 4.2380 4.9877 -2.3474 9 7 4.9636 5.1940 -1.2815 10 14 4.4366 6.0923 -3.8407 11 1 3.1446 6.7619 -4.1365 12 1 5.4733 7.1187 -3.5628 13 1 4.8495 5.2749 -5.0096 14 6 2.9557 4.0542 0.0433 15 6 2.5525 3.4686 1.2050 16 6 2.0858 2.1451 1.2003 17 6 1.6514 1.5170 2.4549 18 8 1.1832 0.3980 2.4427 19 6 1.7876 2.2628 3.7574 20 1 1.6125 3.3251 3.5878 21 6 3.1977 2.0610 4.3156 22 17 0.5783 1.6352 4.9383 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.3923 1.4423 -2.0893 29 1 5.6061 5.9205 -1.2653 30 1 3.3147 5.0727 0.0477 31 1 2.5922 4.0233 2.1308 32 1 3.9288 2.4403 3.6017 33 1 3.2961 2.6000 5.2579 34 1 3.3729 0.9986 4.4852 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396046301.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:33 Heat of formation + Delta-G solvation = -59.205866 kcal Electronic energy + Delta-G solvation = -17884.610034 eV Core-core repulsion = 14999.807882 eV Total energy + Delta-G solvation = -2884.802152 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.89912 -38.85067 -36.97160 -35.98943 -34.65180 -33.41471 -31.72349 -29.99714 -28.00716 -25.64176 -24.29033 -23.29095 -21.69688 -20.46458 -18.93181 -17.76351 -17.24064 -16.55660 -15.99836 -15.69268 -15.43357 -15.30647 -14.64343 -14.47989 -13.95848 -13.81834 -13.60925 -13.42315 -13.20944 -13.16092 -12.85748 -12.66812 -12.54565 -12.42065 -12.19991 -11.84532 -11.77860 -11.59596 -11.42650 -11.19987 -11.08829 -10.04448 -9.51018 -9.27480 -8.81502 -6.51173 0.20394 1.10289 1.17528 1.37197 1.41343 1.50944 1.86609 2.15041 2.68137 3.17364 3.62267 3.92474 3.96444 4.15885 4.24112 4.46951 4.56973 4.67560 4.70445 4.79290 4.85297 4.95380 4.99326 5.06787 5.11473 5.13864 5.25286 5.38818 5.45478 5.63135 5.88965 5.98310 6.06277 6.25557 6.53973 6.74944 6.88436 6.90729 8.12245 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026323 B = 0.005435 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.465886 B = 5150.680523 C = 5940.064184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.083 4.083 3 C 0.007 3.993 4 C -0.259 4.259 5 C 0.108 3.892 6 C -0.469 4.469 7 H 0.084 0.916 8 C 0.040 3.960 9 N -0.793 5.793 10 Si 0.986 3.014 11 H -0.259 1.259 12 H -0.263 1.263 13 H -0.259 1.259 14 C -0.202 4.202 15 C -0.048 4.048 16 C -0.315 4.315 17 C 0.393 3.607 18 O -0.485 6.485 19 C -0.041 4.041 20 H 0.133 0.867 21 C -0.143 4.143 22 Cl -0.174 7.174 23 H 0.065 0.935 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.298 0.702 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.290 0.315 4.903 5.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.120 4.120 3 C 0.007 3.993 4 C -0.278 4.278 5 C 0.105 3.895 6 C -0.496 4.496 7 H 0.103 0.897 8 C -0.180 4.180 9 N -0.416 5.416 10 Si 0.805 3.195 11 H -0.183 1.183 12 H -0.187 1.187 13 H -0.183 1.183 14 C -0.221 4.221 15 C -0.067 4.067 16 C -0.318 4.318 17 C 0.277 3.723 18 O -0.367 6.367 19 C -0.085 4.085 20 H 0.151 0.849 21 C -0.201 4.201 22 Cl -0.148 7.148 23 H 0.084 0.916 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.130 0.870 31 H 0.144 0.856 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.416 -0.163 5.112 5.307 hybrid contribution 0.239 0.549 -0.652 0.886 sum -1.177 0.387 4.459 4.628 Atomic orbital electron populations 1.21461 0.94292 1.01445 1.00556 1.20658 0.96926 0.92733 1.01708 1.19642 0.92218 0.95157 0.92314 1.20709 1.14550 0.95734 0.96842 1.18154 0.86742 0.90641 0.94007 1.20140 1.20590 1.14151 0.94669 0.89749 1.26918 0.92917 0.97393 1.00803 1.69714 1.14863 1.26454 1.30568 0.85180 0.79379 0.77551 0.77351 1.18275 1.18678 1.18305 1.21012 1.07738 1.00494 0.92894 1.20899 0.94723 0.93361 0.97679 1.19413 1.21486 0.97472 0.93386 1.22127 0.74714 0.86362 0.89079 1.90421 1.37479 1.20120 1.88640 1.24662 0.92886 1.01974 0.89009 0.84903 1.21981 0.91316 1.03774 1.02982 1.98702 1.62785 1.90217 1.63059 0.91646 0.93753 0.93763 0.92377 0.90372 0.88458 0.89021 0.87033 0.85581 0.89992 0.88346 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.29 9.41 71.98 0.68 -3.61 16 2 C -0.08 -3.25 5.32 29.85 0.16 -3.09 16 3 C 0.01 0.32 5.13 -19.83 -0.10 0.22 16 4 C -0.26 -12.34 9.34 22.46 0.21 -12.13 16 5 C 0.11 5.41 5.57 -21.27 -0.12 5.29 16 6 C -0.47 -23.02 9.04 23.45 0.21 -22.81 16 7 H 0.08 3.99 7.90 -2.91 -0.02 3.97 16 8 C 0.04 1.78 5.15 85.39 0.44 2.22 16 9 N -0.79 -36.64 10.94 21.89 0.24 -36.40 16 10 Si 0.99 33.75 29.59 68.60 2.03 35.78 16 11 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 12 H -0.26 -8.41 7.11 99.48 0.71 -7.71 16 13 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 14 C -0.20 -9.59 8.62 22.47 0.19 -9.40 16 15 C -0.05 -1.99 9.31 22.31 0.21 -1.78 16 16 C -0.32 -13.23 5.89 -20.01 -0.12 -13.35 16 17 C 0.39 14.67 6.10 27.95 0.17 14.84 16 18 O -0.49 -19.65 11.44 -3.13 -0.04 -19.69 16 19 C -0.04 -1.21 3.11 29.85 0.09 -1.11 16 20 H 0.13 3.49 6.57 -2.39 -0.02 3.47 16 21 C -0.14 -3.55 9.30 71.98 0.67 -2.88 16 22 Cl -0.17 -5.21 28.00 -2.72 -0.08 -5.28 16 23 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.04 1.70 6.52 -2.38 -0.02 1.68 16 25 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 2.11 7.99 -2.39 -0.02 2.10 16 27 H 0.08 3.15 5.95 -2.39 -0.01 3.14 16 28 H 0.10 4.46 8.02 -2.91 -0.02 4.44 16 29 H 0.30 12.25 8.29 -92.71 -0.77 11.48 16 30 H 0.11 5.40 6.18 -2.91 -0.02 5.38 16 31 H 0.13 4.25 6.35 -2.91 -0.02 4.23 16 32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -53.90 297.06 5.96 -47.94 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 1.11 Total: 25.24 kcal Atomic # 6 Polarization: -50.28 SS G_CDS: 2.69 Total: -47.58 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.24 Total: -36.40 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.04 Total: -19.69 kcal Atomic # 14 Polarization: 33.75 SS G_CDS: 2.03 Total: 35.78 kcal Atomic # 17 Polarization: -5.21 SS G_CDS: -0.08 Total: -5.28 kcal Total: -53.90 5.96 -47.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396046301.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.266 kcal (2) G-P(sol) polarization free energy of solvation -53.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds