Wall clock time and date at job start Mon Mar 30 2020 07:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50691 * 109.47480 * 2 1 4 4 C 1.38662 * 119.74686 * 352.59716 * 3 2 1 5 5 C 1.37600 * 120.24677 * 179.97438 * 4 3 2 6 6 C 1.40730 * 119.74736 * 359.97438 * 5 4 3 7 7 C 1.41395 * 120.24446 * 179.97438 * 6 5 4 8 8 H 1.08002 * 120.00055 * 146.05318 * 7 6 5 9 9 C 1.39940 * 120.00356 * 326.06235 * 7 6 5 10 10 N 1.30831 * 119.99945 * 356.24446 * 9 7 6 11 11 Si 1.86801 * 120.00336 * 176.24686 * 9 7 6 12 12 H 1.48496 * 109.47005 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47368 * 119.99993 * 11 9 7 14 14 H 1.48504 * 109.46904 * 239.99978 * 11 9 7 15 15 C 1.40695 * 119.51196 * 0.02562 * 6 5 4 16 16 C 1.37645 * 119.74278 * 359.72537 * 15 6 5 17 17 C 1.50703 * 119.87367 * 180.29477 * 16 15 6 18 18 H 1.09002 * 109.46839 * 340.85197 * 17 16 15 19 19 Cl 1.80301 * 109.46688 * 220.85962 * 17 16 15 20 20 C 1.50694 * 109.47596 * 100.85960 * 17 16 15 21 21 C 1.50708 * 119.99668 * 277.13691 * 20 17 16 22 22 O 1.20755 * 120.00328 * 97.12629 * 20 17 16 23 23 H 1.09002 * 109.47220 * 59.12505 * 1 2 3 24 24 H 1.08995 * 109.47276 * 179.12286 * 1 2 3 25 25 H 1.09001 * 109.46924 * 299.12207 * 1 2 3 26 26 H 1.09009 * 109.47013 * 120.00251 * 2 1 3 27 27 H 1.08996 * 109.47314 * 239.99732 * 2 1 3 28 28 H 1.08004 * 119.87660 * 0.02562 * 4 3 2 29 29 H 1.08004 * 120.12268 * 180.02562 * 5 4 3 30 30 H 0.97000 * 120.00167 * 180.02562 * 10 9 7 31 31 H 1.08004 * 120.12693 * 180.02562 * 15 6 5 32 32 H 1.08997 * 109.47141 * 359.97438 * 21 20 17 33 33 H 1.08992 * 109.47360 * 119.99641 * 21 20 17 34 34 H 1.09000 * 109.46386 * 239.99457 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 1.1362 2.4674 -0.1551 5 6 1.5836 3.7686 -0.1561 6 6 2.9565 4.0350 0.0016 7 6 3.4278 5.3681 0.0016 8 1 4.2693 5.6434 0.6201 9 6 2.8039 6.3309 -0.7997 10 7 1.8323 5.9829 -1.6038 11 14 3.3584 8.1130 -0.7214 12 1 4.4656 8.2443 0.2594 13 1 3.8302 8.5441 -2.0619 14 1 2.2196 8.9676 -0.2990 15 6 3.8566 2.9651 0.1582 16 6 3.3860 1.6716 0.1613 17 6 4.3467 0.5237 0.3354 18 1 5.3582 0.8584 0.1053 19 17 3.8892 -0.8173 -0.7795 20 6 4.2915 0.0339 1.7595 21 6 5.0892 0.7348 2.8289 22 8 3.6078 -0.9200 2.0438 23 1 -0.3634 0.5274 -0.8820 24 1 -0.3633 -1.0275 -0.0157 25 1 -0.3633 0.5001 0.8978 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 0.0829 2.2605 -0.2748 29 1 0.8838 4.5823 -0.2767 30 1 1.4001 6.6502 -2.1595 31 1 4.9122 3.1583 0.2804 32 1 5.6395 1.5651 2.3862 33 1 4.4142 1.1139 3.5961 34 1 5.7913 0.0321 3.2776 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396047734.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:41 Heat of formation + Delta-G solvation = -47.238756 kcal Electronic energy + Delta-G solvation = -18061.627940 eV Core-core repulsion = 15177.344720 eV Total energy + Delta-G solvation = -2884.283219 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.94094 -39.50627 -37.02788 -35.97657 -34.33902 -33.30780 -30.89267 -30.52513 -27.73983 -27.01243 -24.40996 -22.47067 -21.35273 -20.65579 -18.89535 -17.39830 -16.96226 -16.76058 -16.37735 -16.04851 -15.64299 -15.41848 -14.98708 -14.56606 -14.05674 -13.78248 -13.49170 -13.27378 -13.16279 -13.02223 -12.99134 -12.75617 -12.64561 -12.46491 -12.02856 -11.91214 -11.88761 -11.51006 -11.24272 -11.04295 -10.63666 -10.37757 -9.32028 -8.99464 -8.51056 -6.32797 0.50800 0.95844 1.06371 1.31007 1.42078 1.51432 1.55774 2.25137 2.74418 3.07364 3.65581 3.76593 3.99398 4.09604 4.28887 4.37585 4.50850 4.61261 4.66212 4.66568 4.91511 5.06801 5.10820 5.12853 5.15872 5.26832 5.34139 5.45255 5.50340 5.66488 5.92972 6.12740 6.18549 6.33931 6.39983 6.71045 6.98863 7.03121 8.45749 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.024123 B = 0.006160 C = 0.005487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.462919 B = 4544.589388 C = 5102.157991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.163 4.163 4 C -0.118 4.118 5 C -0.160 4.160 6 C 0.073 3.927 7 C -0.498 4.498 8 H 0.080 0.920 9 C 0.028 3.972 10 N -0.847 5.847 11 Si 0.982 3.018 12 H -0.254 1.254 13 H -0.272 1.272 14 H -0.271 1.271 15 C -0.190 4.190 16 C -0.088 4.088 17 C 0.000 4.000 18 H 0.150 0.850 19 Cl -0.159 7.159 20 C 0.363 3.637 21 C -0.191 4.191 22 O -0.466 6.466 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.110 0.890 29 H 0.099 0.901 30 H 0.282 0.718 31 H 0.120 0.880 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.267 -6.303 4.516 9.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 C -0.165 4.165 4 C -0.136 4.136 5 C -0.180 4.180 6 C 0.071 3.929 7 C -0.529 4.529 8 H 0.098 0.902 9 C -0.183 4.183 10 N -0.475 5.475 11 Si 0.804 3.196 12 H -0.178 1.178 13 H -0.197 1.197 14 H -0.196 1.196 15 C -0.210 4.210 16 C -0.088 4.088 17 C -0.044 4.044 18 H 0.168 0.832 19 Cl -0.132 7.132 20 C 0.239 3.761 21 C -0.247 4.247 22 O -0.341 6.341 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.128 0.872 29 H 0.117 0.883 30 H 0.092 0.908 31 H 0.138 0.862 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.721 -6.827 4.416 9.402 hybrid contribution -0.206 1.037 -0.520 1.179 sum 4.514 -5.790 3.896 8.311 Atomic orbital electron populations 1.21808 0.96098 1.01291 1.01035 1.21064 0.95654 0.93090 1.02986 1.19546 0.92701 0.95208 1.08997 1.20959 0.98703 0.92565 1.01402 1.21459 0.96346 0.95307 1.04852 1.17881 0.91534 0.93602 0.89873 1.19783 1.15150 0.93805 1.24130 0.90151 1.26684 0.93608 1.04960 0.93081 1.69856 1.20745 1.37074 1.19794 0.85145 0.79122 0.76369 0.78976 1.17776 1.19666 1.19603 1.21095 0.98696 0.90817 1.10346 1.18856 0.92653 0.91979 1.05354 1.23767 1.01986 0.87800 0.90871 0.83199 1.98667 1.93585 1.53452 1.67497 1.25024 0.78445 0.81993 0.90686 1.22226 1.01696 1.03052 0.97746 1.90371 1.34224 1.25609 1.83854 0.93172 0.91852 0.93535 0.91297 0.90092 0.87182 0.88272 0.90761 0.86238 0.88157 0.88377 0.86081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.79 8.60 71.98 0.62 -4.17 16 2 C -0.09 -3.40 4.33 29.85 0.13 -3.27 16 3 C -0.16 -6.89 5.74 -19.68 -0.11 -7.00 16 4 C -0.12 -5.42 8.98 22.22 0.20 -5.22 16 5 C -0.16 -8.21 8.63 22.73 0.20 -8.02 16 6 C 0.07 3.70 5.52 -21.29 -0.12 3.58 16 7 C -0.50 -25.41 9.05 23.46 0.21 -25.19 16 8 H 0.08 3.87 7.85 -2.91 -0.02 3.85 16 9 C 0.03 1.40 5.34 85.25 0.46 1.86 16 10 N -0.85 -44.25 10.86 21.83 0.24 -44.02 16 11 Si 0.98 37.69 29.56 68.60 2.03 39.71 16 12 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 13 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 14 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 15 C -0.19 -8.20 9.41 22.73 0.21 -7.98 16 16 C -0.09 -3.47 4.86 -19.92 -0.10 -3.57 16 17 C 0.00 0.00 3.00 29.10 0.09 0.08 16 18 H 0.15 3.74 7.98 -2.39 -0.02 3.73 16 19 Cl -0.16 -5.21 23.14 -2.72 -0.06 -5.27 16 20 C 0.36 10.43 6.16 29.10 0.18 10.61 16 21 C -0.19 -3.81 10.33 71.24 0.74 -3.08 16 22 O -0.47 -15.94 14.76 -1.44 -0.02 -15.96 16 23 H 0.05 1.65 7.09 -2.39 -0.02 1.64 16 24 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.05 1.53 7.89 -2.39 -0.02 1.51 16 26 H 0.07 2.63 5.11 -2.38 -0.01 2.62 16 27 H 0.08 3.00 5.32 -2.39 -0.01 2.98 16 28 H 0.11 4.65 5.88 -2.91 -0.02 4.64 16 29 H 0.10 5.44 6.38 -2.91 -0.02 5.42 16 30 H 0.28 13.52 8.30 -92.71 -0.77 12.75 16 31 H 0.12 4.51 8.02 -2.91 -0.02 4.49 16 32 H 0.10 1.74 8.00 -2.39 -0.02 1.72 16 33 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -59.55 291.83 5.99 -53.55 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 1.11 Total: 23.34 kcal Atomic # 6 Polarization: -54.06 SS G_CDS: 2.70 Total: -51.36 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.24 Total: -44.02 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.02 Total: -15.96 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 2.03 Total: 39.71 kcal Atomic # 17 Polarization: -5.21 SS G_CDS: -0.06 Total: -5.27 kcal Total: -59.55 5.99 -53.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396047734.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.314 kcal (2) G-P(sol) polarization free energy of solvation -59.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds