Wall clock time and date at job start Mon Mar 30 2020 07:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50704 * 109.47250 * 2 1 4 4 C 1.37548 * 120.06983 * 265.28396 * 3 2 1 5 5 C 1.38677 * 121.22166 * 180.26442 * 4 3 2 6 6 C 1.38055 * 121.31502 * 359.73116 * 5 4 3 7 7 C 1.39655 * 120.01711 * 359.97438 * 6 5 4 8 8 C 1.46601 * 120.59066 * 179.97438 * 7 6 5 9 9 O 1.21339 * 119.99713 * 282.66884 * 8 7 6 10 10 C 1.50701 * 119.99961 * 102.66877 * 8 7 6 11 11 H 1.09005 * 109.46874 * 151.15609 * 10 8 7 12 12 C 1.52997 * 109.47329 * 271.15363 * 10 8 7 13 13 Cl 1.80305 * 109.47278 * 31.15858 * 10 8 7 14 14 C 1.40796 * 120.06718 * 85.00631 * 3 2 1 15 15 C 1.40729 * 120.61855 * 0.02562 * 14 3 2 16 16 H 1.07991 * 120.00366 * 309.28092 * 15 14 3 17 17 C 1.40400 * 119.99220 * 129.00202 * 15 14 3 18 18 N 1.30554 * 120.00082 * 345.64111 * 17 15 14 19 19 Si 1.86797 * 119.99529 * 165.64478 * 17 15 14 20 20 H 1.48502 * 109.47142 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47285 * 119.99735 * 19 17 15 22 22 H 1.48501 * 109.47274 * 239.99841 * 19 17 15 23 23 H 1.08993 * 109.47402 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46908 * 300.00061 * 1 2 3 25 25 H 1.09000 * 109.47553 * 59.99065 * 1 2 3 26 26 H 1.09004 * 109.47199 * 240.00380 * 2 1 3 27 27 H 1.09004 * 109.47677 * 120.00205 * 2 1 3 28 28 H 1.07997 * 119.39046 * 359.97438 * 4 3 2 29 29 H 1.08012 * 119.34495 * 179.71600 * 5 4 3 30 30 H 1.07994 * 119.99492 * 180.02562 * 6 5 4 31 31 H 1.09005 * 109.46942 * 60.00288 * 12 10 8 32 32 H 1.08997 * 109.47130 * 179.97438 * 12 10 8 33 33 H 1.08995 * 109.47118 * 300.00491 * 12 10 8 34 34 H 0.97003 * 119.99734 * 185.07671 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3543 2.0380 -1.1863 5 6 2.8238 3.3426 -1.2137 6 6 2.9807 4.0732 -0.0528 7 6 2.6639 3.5008 1.1810 8 6 2.8263 4.2650 2.4216 9 8 3.9308 4.4169 2.9004 10 6 1.6213 4.8619 3.1020 11 1 1.8044 4.9258 4.1747 12 6 1.3626 6.2629 2.5445 13 17 0.1820 3.8191 2.7991 14 6 2.1674 2.1213 1.2139 15 6 1.8376 1.5071 2.4364 16 1 0.8828 1.0163 2.5538 17 6 2.7523 1.5274 3.5013 18 7 3.9971 1.8571 3.2865 19 14 2.1880 1.0825 5.2256 20 1 0.7413 0.7482 5.2022 21 1 2.9587 -0.0903 5.7115 22 1 2.4156 2.2351 6.1337 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.2439 1.4950 -2.1133 29 1 3.0719 3.7961 -2.1621 30 1 3.3476 5.0878 -0.0989 31 1 1.1795 6.1990 1.4718 32 1 0.4908 6.6944 3.0363 33 1 2.2327 6.8933 2.7276 34 1 4.6450 1.8002 4.0061 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396047794.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:01 Heat of formation + Delta-G solvation = -51.086192 kcal Electronic energy + Delta-G solvation = -18806.448625 eV Core-core repulsion = 15921.998569 eV Total energy + Delta-G solvation = -2884.450057 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.51104 -38.80064 -36.79236 -35.34913 -34.52549 -33.29282 -31.48034 -30.07910 -27.29941 -25.97368 -24.15515 -23.39588 -21.51014 -19.95600 -18.89129 -17.23091 -17.06019 -16.75566 -16.20649 -15.96499 -15.32778 -15.01649 -14.56334 -14.41571 -13.97099 -13.78993 -13.41659 -13.25473 -13.19174 -12.98285 -12.96701 -12.58698 -12.47561 -12.35163 -12.06543 -11.85878 -11.61171 -11.49549 -11.20862 -11.03076 -10.81338 -10.13086 -9.14613 -8.80778 -8.47470 -6.20726 0.78773 1.01464 1.11136 1.35703 1.40830 1.46693 1.63667 2.23964 2.83931 3.21676 3.54505 3.86306 3.90373 4.31947 4.37983 4.51973 4.57988 4.71749 4.73246 4.79092 4.84479 4.99817 5.07522 5.13848 5.24561 5.29093 5.35359 5.47799 5.59365 5.80189 5.97299 6.05968 6.25004 6.42701 6.64589 6.77670 7.01925 7.10786 8.49388 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.014733 B = 0.012433 C = 0.009480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.999749 B = 2251.526984 C = 2952.931598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.057 4.057 3 C -0.183 4.183 4 C -0.092 4.092 5 C -0.221 4.221 6 C -0.090 4.090 7 C -0.226 4.226 8 C 0.440 3.560 9 O -0.474 6.474 10 C -0.052 4.052 11 H 0.107 0.893 12 C -0.140 4.140 13 Cl -0.142 7.142 14 C 0.156 3.844 15 C -0.468 4.468 16 H 0.082 0.918 17 C 0.044 3.956 18 N -0.825 5.825 19 Si 0.924 3.076 20 H -0.248 1.248 21 H -0.274 1.274 22 H -0.276 1.276 23 H 0.064 0.936 24 H 0.038 0.962 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.638 3.581 -2.285 7.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.094 4.094 3 C -0.184 4.184 4 C -0.110 4.110 5 C -0.239 4.239 6 C -0.109 4.109 7 C -0.228 4.228 8 C 0.317 3.683 9 O -0.349 6.349 10 C -0.097 4.097 11 H 0.125 0.875 12 C -0.197 4.197 13 Cl -0.115 7.115 14 C 0.154 3.846 15 C -0.499 4.499 16 H 0.100 0.900 17 C -0.170 4.170 18 N -0.453 5.453 19 Si 0.748 3.252 20 H -0.171 1.171 21 H -0.199 1.199 22 H -0.201 1.201 23 H 0.083 0.917 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.137 0.863 29 H 0.140 0.860 30 H 0.124 0.876 31 H 0.092 0.908 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.960 3.664 -1.923 7.256 hybrid contribution 0.203 -0.301 1.059 1.119 sum -5.756 3.363 -0.864 6.723 Atomic orbital electron populations 1.21613 0.94974 1.01195 1.01032 1.20134 0.95975 0.92517 1.00812 1.20384 1.08070 0.96705 0.93272 1.20874 0.98266 0.94901 0.96932 1.20587 1.10151 0.96067 0.97133 1.20858 0.99158 0.98730 0.92111 1.21374 1.12676 0.96027 0.92767 1.22195 0.88083 0.74004 0.83999 1.90461 1.29725 1.50896 1.63805 1.24602 0.87472 0.95094 1.02483 0.87471 1.21991 1.04391 0.90509 1.02842 1.98723 1.44322 1.71468 1.97033 1.18344 0.85650 0.87873 0.92717 1.19141 1.02447 1.33167 0.95171 0.90018 1.26266 0.94436 0.94075 1.02220 1.69737 1.02975 1.37617 1.34925 0.85967 0.80593 0.78558 0.80115 1.17079 1.19938 1.20118 0.91721 0.94243 0.92919 0.91843 0.93045 0.86321 0.86020 0.87589 0.90812 0.88079 0.90090 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 9.89 71.98 0.71 -3.62 16 2 C -0.06 -2.18 5.60 29.85 0.17 -2.01 16 3 C -0.18 -8.10 5.19 -19.40 -0.10 -8.20 16 4 C -0.09 -3.69 9.60 22.21 0.21 -3.47 16 5 C -0.22 -8.79 9.98 22.33 0.22 -8.57 16 6 C -0.09 -3.91 9.80 22.57 0.22 -3.69 16 7 C -0.23 -10.77 4.70 -18.55 -0.09 -10.86 16 8 C 0.44 20.33 3.59 27.87 0.10 20.43 16 9 O -0.47 -24.76 16.17 -3.21 -0.05 -24.82 16 10 C -0.05 -1.92 3.76 29.85 0.11 -1.81 16 11 H 0.11 3.90 8.14 -2.38 -0.02 3.88 16 12 C -0.14 -3.89 9.30 71.98 0.67 -3.22 16 13 Cl -0.14 -5.43 24.51 -2.72 -0.07 -5.50 16 14 C 0.16 7.61 4.62 -19.85 -0.09 7.52 16 15 C -0.47 -22.94 4.73 23.41 0.11 -22.83 16 16 H 0.08 3.98 6.90 -2.92 -0.02 3.96 16 17 C 0.04 2.21 4.37 85.41 0.37 2.58 16 18 N -0.83 -45.06 10.47 21.90 0.23 -44.83 16 19 Si 0.92 39.59 29.59 68.60 2.03 41.62 16 20 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 23 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.04 1.43 7.15 -2.38 -0.02 1.42 16 25 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.06 2.13 8.05 -2.38 -0.02 2.12 16 27 H 0.05 2.16 7.33 -2.38 -0.02 2.14 16 28 H 0.12 4.02 8.05 -2.91 -0.02 4.00 16 29 H 0.12 4.06 8.06 -2.90 -0.02 4.03 16 30 H 0.11 4.12 8.06 -2.91 -0.02 4.10 16 31 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.28 14.61 8.30 -92.71 -0.77 13.84 16 Total: -1.00 -59.31 297.96 5.85 -53.46 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 1.09 Total: 17.82 kcal Atomic # 6 Polarization: -40.38 SS G_CDS: 2.62 Total: -37.75 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.23 Total: -44.83 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.05 Total: -24.82 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Atomic # 17 Polarization: -5.43 SS G_CDS: -0.07 Total: -5.50 kcal Total: -59.31 5.85 -53.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396047794.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.371 kcal (2) G-P(sol) polarization free energy of solvation -59.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds