Wall clock time and date at job start Mon Mar 30 2020 07:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47378 * 2 1 4 4 C 1.40729 * 120.13186 * 90.00005 * 3 2 1 5 5 C 1.41394 * 120.24270 * 359.95105 * 4 3 2 6 6 H 1.08004 * 120.00102 * 335.15190 * 5 4 3 7 7 C 1.39947 * 120.00313 * 154.87593 * 5 4 3 8 8 N 1.30830 * 119.99620 * 342.60291 * 7 5 4 9 9 Si 1.86795 * 120.00302 * 162.59985 * 7 5 4 10 10 H 1.48506 * 109.47053 * 60.00462 * 9 7 5 11 11 H 1.48504 * 109.46992 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47421 * 300.00449 * 9 7 5 13 13 C 1.40697 * 119.51352 * 180.23065 * 4 3 2 14 14 C 1.37641 * 119.74520 * 359.48817 * 13 4 3 15 15 C 1.38607 * 120.24706 * 0.51514 * 14 13 4 16 16 C 1.37600 * 120.12841 * 269.97253 * 3 2 1 17 17 C 1.50705 * 119.87065 * 0.02562 * 16 3 2 18 18 C 1.50702 * 109.47311 * 84.99782 * 17 16 3 19 19 O 1.20758 * 120.00018 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.99959 * 179.97438 * 18 17 16 21 21 Cl 1.80295 * 109.47159 * 179.97438 * 20 18 17 22 22 H 1.09000 * 109.46753 * 60.00250 * 1 2 3 23 23 H 1.08998 * 109.47422 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46943 * 300.00653 * 1 2 3 25 25 H 1.08997 * 109.47346 * 239.99617 * 2 1 3 26 26 H 1.09007 * 109.47045 * 120.00022 * 2 1 3 27 27 H 0.97004 * 119.99731 * 179.97438 * 8 7 5 28 28 H 1.08005 * 120.12514 * 179.74066 * 13 4 3 29 29 H 1.08001 * 119.87416 * 180.22546 * 14 13 4 30 30 H 1.07997 * 119.75267 * 179.76275 * 15 14 13 31 31 H 1.09006 * 109.47054 * 204.99644 * 17 16 3 32 32 H 1.08999 * 109.47349 * 324.99646 * 17 16 3 33 33 H 1.08996 * 109.47383 * 300.00442 * 20 18 17 34 34 H 1.09005 * 109.47009 * 60.00083 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2679 2.0868 1.2171 5 6 2.0339 1.4281 2.4462 6 1 1.3278 0.6124 2.4959 7 6 2.7215 1.8294 3.5972 8 7 3.8036 2.5572 3.4923 9 14 2.0943 1.3260 5.2831 10 1 2.0680 -0.1557 5.3793 11 1 2.9936 1.8745 6.3299 12 1 0.7225 1.8593 5.4806 13 6 2.7323 3.4148 1.2019 14 6 2.9612 4.0445 -0.0004 15 6 2.7258 3.3788 -1.1931 16 6 2.2632 2.0717 -1.1901 17 6 2.0120 1.3612 -2.4952 18 6 0.5582 1.4957 -2.8687 19 8 -0.1962 2.1050 -2.1491 20 6 0.0459 0.8696 -4.1402 21 17 -1.7184 1.2020 -4.3053 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 4.2801 2.8356 4.2901 28 1 2.9123 3.9367 2.1302 29 1 3.3211 5.0627 -0.0144 30 1 2.9045 3.8818 -2.1319 31 1 2.6301 1.8054 -3.2755 32 1 2.2637 0.3061 -2.3889 33 1 0.5770 1.2923 -4.9930 34 1 0.2108 -0.2074 -4.1070 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396047886.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:42 Heat of formation + Delta-G solvation = -41.318108 kcal Electronic energy + Delta-G solvation = -18060.807756 eV Core-core repulsion = 15176.781276 eV Total energy + Delta-G solvation = -2884.026481 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.53868 -37.64885 -35.90980 -33.89453 -32.99697 -31.62986 -29.64901 -28.58446 -26.06051 -25.20833 -22.57240 -20.74447 -19.76527 -18.81099 -16.94380 -15.91192 -15.85821 -15.30832 -14.96912 -14.53507 -14.24231 -13.52334 -13.14909 -12.95669 -12.58831 -12.56036 -12.38518 -11.69341 -11.66061 -11.38068 -11.06911 -11.01195 -10.83908 -10.71535 -10.52755 -10.47583 -10.33341 -10.05430 -9.50285 -9.31099 -9.19782 -9.05918 -7.28500 -7.21035 -6.71756 -4.30446 2.05834 2.18446 2.82345 2.93256 3.08339 3.11397 3.25415 3.95986 4.09253 4.66321 4.86521 4.99884 5.32802 5.58777 5.60483 5.76796 5.98005 6.03909 6.09522 6.38903 6.44459 6.50723 6.60604 6.80439 6.97976 7.06305 7.19009 7.29503 7.44009 7.65029 7.77588 7.92854 8.09015 8.11444 8.31986 8.66964 8.94061 9.02171 10.22810 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.028482 B = 0.005504 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.847963 B = 5085.653570 C = 5656.449119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.063 4.063 3 C -0.170 4.170 4 C 0.116 3.884 5 C -0.460 4.460 6 H 0.079 0.921 7 C 0.077 3.923 8 N -0.796 5.796 9 Si 0.904 3.096 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.264 1.264 13 C -0.159 4.159 14 C -0.109 4.109 15 C -0.225 4.225 16 C -0.058 4.058 17 C -0.118 4.118 18 C 0.337 3.663 19 O -0.399 6.399 20 C -0.092 4.092 21 Cl -0.158 7.158 22 H 0.056 0.944 23 H 0.034 0.966 24 H 0.055 0.945 25 H 0.041 0.959 26 H 0.066 0.934 27 H 0.279 0.721 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.721 -4.361 -10.545 11.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.100 4.100 3 C -0.171 4.171 4 C 0.114 3.886 5 C -0.489 4.489 6 H 0.097 0.903 7 C -0.141 4.141 8 N -0.421 5.421 9 Si 0.729 3.271 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.189 1.189 13 C -0.178 4.178 14 C -0.128 4.128 15 C -0.244 4.244 16 C -0.058 4.058 17 C -0.155 4.155 18 C 0.208 3.792 19 O -0.268 6.268 20 C -0.155 4.155 21 Cl -0.131 7.131 22 H 0.075 0.925 23 H 0.053 0.947 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.133 0.867 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.138 0.862 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.082 -3.898 -10.006 11.173 hybrid contribution -0.091 -0.177 0.668 0.697 sum -3.174 -4.075 -9.338 10.672 Atomic orbital electron populations 1.21893 0.96664 0.99330 1.02853 1.20193 0.94584 0.94799 1.00396 1.19433 1.10035 0.95246 0.92403 1.17388 0.88775 0.90952 0.91523 1.19527 1.21313 1.15852 0.92222 0.90254 1.25888 0.93367 0.93525 1.01273 1.69825 1.12245 1.28476 1.31593 0.86438 0.79904 0.79819 0.80980 1.19056 1.20434 1.18884 1.21304 1.05048 0.95112 0.96341 1.20604 1.01064 0.97743 0.93362 1.20115 1.12886 0.95313 0.96125 1.18548 1.01610 0.94208 0.91405 1.20993 0.93220 1.02906 0.98371 1.24628 0.91539 0.77981 0.85020 1.90479 1.58155 1.29722 1.48481 1.25047 0.83567 1.05096 1.01800 1.98731 1.19444 1.96707 1.98236 0.92536 0.94697 0.92551 0.94024 0.91496 0.90968 0.86651 0.89600 0.89878 0.88887 0.88169 0.86177 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.88 37.16 0.37 -2.50 16 2 C -0.06 -1.26 5.04 -27.89 -0.14 -1.40 16 3 C -0.17 -3.95 5.19 -103.92 -0.54 -4.49 16 4 C 0.12 3.05 5.56 -106.83 -0.59 2.46 16 5 C -0.46 -12.01 8.15 -37.74 -0.31 -12.31 16 6 H 0.08 2.01 6.59 -52.48 -0.35 1.66 16 7 C 0.08 1.92 5.14 -17.34 -0.09 1.84 16 8 N -0.80 -20.56 10.99 55.55 0.61 -19.94 16 9 Si 0.90 18.84 29.59 -169.99 -5.03 13.81 16 10 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 11 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 12 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 13 C -0.16 -4.17 8.69 -38.87 -0.34 -4.51 16 14 C -0.11 -2.60 10.02 -39.66 -0.40 -3.00 16 15 C -0.23 -4.98 9.68 -39.29 -0.38 -5.36 16 16 C -0.06 -1.22 4.37 -104.70 -0.46 -1.67 16 17 C -0.12 -1.79 5.26 -29.03 -0.15 -1.94 16 18 C 0.34 5.05 6.15 -29.03 -0.18 4.87 16 19 O -0.40 -7.77 13.57 6.00 0.08 -7.69 16 20 C -0.09 -0.96 7.07 36.01 0.25 -0.70 16 21 Cl -0.16 -2.07 28.37 -51.86 -1.47 -3.54 16 22 H 0.06 1.08 4.41 -51.93 -0.23 0.85 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.06 1.18 7.89 -51.93 -0.41 0.77 16 25 H 0.04 0.71 6.01 -51.93 -0.31 0.40 16 26 H 0.07 1.42 6.76 -51.93 -0.35 1.06 16 27 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 28 H 0.12 3.14 6.21 -52.48 -0.33 2.81 16 29 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 30 H 0.08 1.63 8.06 -52.49 -0.42 1.20 16 31 H 0.09 1.17 8.05 -51.93 -0.42 0.75 16 32 H 0.10 1.34 6.15 -51.93 -0.32 1.02 16 33 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 294.98 15.07 4.45 4.45 Total: -1.00 -29.45 294.98 -8.28 -37.73 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -3.96 Total: 3.92 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: -2.95 Total: -28.72 kcal Atomic # 7 Polarization: -20.56 SS G_CDS: 0.61 Total: -19.94 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: 0.08 Total: -7.69 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -1.47 Total: -3.54 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.45 -8.28 -37.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396047886.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.593 kcal (2) G-P(sol) polarization free energy of solvation -29.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds