Wall clock time and date at job start Mon Mar 30 2020 07:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47378 * 2 1 4 4 C 1.40729 * 120.13186 * 90.00005 * 3 2 1 5 5 C 1.41394 * 120.24270 * 359.95105 * 4 3 2 6 6 H 1.08004 * 120.00102 * 335.15190 * 5 4 3 7 7 C 1.39947 * 120.00313 * 154.87593 * 5 4 3 8 8 N 1.30830 * 119.99620 * 342.60291 * 7 5 4 9 9 Si 1.86795 * 120.00302 * 162.59985 * 7 5 4 10 10 H 1.48506 * 109.47053 * 60.00462 * 9 7 5 11 11 H 1.48504 * 109.46992 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47421 * 300.00449 * 9 7 5 13 13 C 1.40697 * 119.51352 * 180.23065 * 4 3 2 14 14 C 1.37641 * 119.74520 * 359.48817 * 13 4 3 15 15 C 1.38607 * 120.24706 * 0.51514 * 14 13 4 16 16 C 1.37600 * 120.12841 * 269.97253 * 3 2 1 17 17 C 1.50705 * 119.87065 * 0.02562 * 16 3 2 18 18 C 1.50702 * 109.47311 * 84.99782 * 17 16 3 19 19 O 1.20758 * 120.00018 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.99959 * 179.97438 * 18 17 16 21 21 Cl 1.80295 * 109.47159 * 179.97438 * 20 18 17 22 22 H 1.09000 * 109.46753 * 60.00250 * 1 2 3 23 23 H 1.08998 * 109.47422 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46943 * 300.00653 * 1 2 3 25 25 H 1.08997 * 109.47346 * 239.99617 * 2 1 3 26 26 H 1.09007 * 109.47045 * 120.00022 * 2 1 3 27 27 H 0.97004 * 119.99731 * 179.97438 * 8 7 5 28 28 H 1.08005 * 120.12514 * 179.74066 * 13 4 3 29 29 H 1.08001 * 119.87416 * 180.22546 * 14 13 4 30 30 H 1.07997 * 119.75267 * 179.76275 * 15 14 13 31 31 H 1.09006 * 109.47054 * 204.99644 * 17 16 3 32 32 H 1.08999 * 109.47349 * 324.99646 * 17 16 3 33 33 H 1.08996 * 109.47383 * 300.00442 * 20 18 17 34 34 H 1.09005 * 109.47009 * 60.00083 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2679 2.0868 1.2171 5 6 2.0339 1.4281 2.4462 6 1 1.3278 0.6124 2.4959 7 6 2.7215 1.8294 3.5972 8 7 3.8036 2.5572 3.4923 9 14 2.0943 1.3260 5.2831 10 1 2.0680 -0.1557 5.3793 11 1 2.9936 1.8745 6.3299 12 1 0.7225 1.8593 5.4806 13 6 2.7323 3.4148 1.2019 14 6 2.9612 4.0445 -0.0004 15 6 2.7258 3.3788 -1.1931 16 6 2.2632 2.0717 -1.1901 17 6 2.0120 1.3612 -2.4952 18 6 0.5582 1.4957 -2.8687 19 8 -0.1962 2.1050 -2.1491 20 6 0.0459 0.8696 -4.1402 21 17 -1.7184 1.2020 -4.3053 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 4.2801 2.8356 4.2901 28 1 2.9123 3.9367 2.1302 29 1 3.3211 5.0627 -0.0144 30 1 2.9045 3.8818 -2.1319 31 1 2.6301 1.8054 -3.2755 32 1 2.2637 0.3061 -2.3889 33 1 0.5770 1.2923 -4.9930 34 1 0.2108 -0.2074 -4.1070 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396047886.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:41 Heat of formation + Delta-G solvation = -56.774203 kcal Electronic energy + Delta-G solvation = -18061.477983 eV Core-core repulsion = 15176.781276 eV Total energy + Delta-G solvation = -2884.696707 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.89301 -39.27386 -36.82651 -35.69424 -34.68648 -33.12737 -30.97818 -30.19410 -27.51386 -27.01925 -24.22817 -22.44381 -21.24999 -20.30148 -18.75364 -17.35057 -17.01125 -16.85285 -16.35419 -16.11374 -15.68562 -15.11084 -14.39527 -14.26132 -14.20955 -13.98474 -13.89399 -13.38201 -13.22207 -13.06930 -12.72727 -12.56878 -12.38165 -12.18435 -12.09089 -11.83783 -11.66659 -11.39056 -11.11757 -11.01181 -10.91661 -10.53372 -9.16126 -8.98452 -8.57649 -6.25378 1.02149 1.07519 1.08314 1.31333 1.36095 1.46192 1.54537 2.20819 2.73913 3.07571 3.77782 4.00956 4.19160 4.33071 4.36179 4.38771 4.48035 4.61829 4.72419 4.78149 4.81893 4.87913 5.06102 5.16041 5.21377 5.31439 5.45262 5.57233 5.63756 5.84702 6.09658 6.24071 6.25494 6.46711 6.67175 6.78477 7.03080 7.14988 8.38470 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.028482 B = 0.005504 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.847963 B = 5085.653570 C = 5656.449119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.059 4.059 3 C -0.182 4.182 4 C 0.079 3.921 5 C -0.490 4.490 6 H 0.076 0.924 7 C 0.035 3.965 8 N -0.830 5.830 9 Si 0.972 3.028 10 H -0.257 1.257 11 H -0.269 1.269 12 H -0.267 1.267 13 C -0.196 4.196 14 C -0.123 4.123 15 C -0.228 4.228 16 C -0.059 4.059 17 C -0.120 4.120 18 C 0.343 3.657 19 O -0.456 6.456 20 C -0.082 4.082 21 Cl -0.184 7.184 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.023 0.977 25 H 0.079 0.921 26 H 0.048 0.952 27 H 0.284 0.716 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.160 0.840 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.777 -6.088 -13.045 14.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.096 4.096 3 C -0.183 4.183 4 C 0.077 3.923 5 C -0.520 4.520 6 H 0.094 0.906 7 C -0.179 4.179 8 N -0.456 5.456 9 Si 0.793 3.207 10 H -0.181 1.181 11 H -0.194 1.194 12 H -0.192 1.192 13 C -0.215 4.215 14 C -0.141 4.141 15 C -0.247 4.247 16 C -0.059 4.059 17 C -0.156 4.156 18 C 0.217 3.783 19 O -0.329 6.329 20 C -0.144 4.144 21 Cl -0.157 7.157 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.043 0.957 25 H 0.097 0.903 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.132 0.868 31 H 0.149 0.851 32 H 0.145 0.855 33 H 0.178 0.822 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.125 -5.637 -12.534 14.094 hybrid contribution -0.017 0.391 1.283 1.341 sum -3.142 -5.246 -11.251 12.805 Atomic orbital electron populations 1.21807 0.95896 1.00795 1.01439 1.20202 0.95107 0.93010 1.01255 1.19902 1.09270 0.96886 0.92280 1.17820 0.89856 0.91379 0.93201 1.19715 1.22215 1.16666 0.93410 0.90596 1.26678 0.93169 0.93395 1.04666 1.69898 1.13315 1.29744 1.32677 0.85409 0.78992 0.79789 0.76478 1.18090 1.19362 1.19192 1.21248 1.07969 0.95872 0.96436 1.20882 1.01076 0.98643 0.93524 1.20577 1.11625 0.96023 0.96508 1.19125 0.99060 0.94043 0.93655 1.21138 0.94558 1.03958 0.95993 1.25036 0.90826 0.76562 0.85842 1.90499 1.59244 1.32469 1.50640 1.25206 0.81807 1.07073 1.00300 1.98740 1.21900 1.96904 1.98161 0.92206 0.91690 0.95746 0.90299 0.93346 0.90564 0.89096 0.88222 0.86780 0.85143 0.85537 0.82239 0.82450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.26 9.88 71.98 0.71 -4.55 16 2 C -0.06 -2.28 5.04 29.85 0.15 -2.13 16 3 C -0.18 -8.45 5.19 -19.41 -0.10 -8.56 16 4 C 0.08 4.36 5.56 -21.29 -0.12 4.24 16 5 C -0.49 -26.84 8.15 23.46 0.19 -26.65 16 6 H 0.08 4.03 6.59 -2.91 -0.02 4.01 16 7 C 0.03 1.82 5.14 85.26 0.44 2.25 16 8 N -0.83 -44.97 10.99 21.83 0.24 -44.73 16 9 Si 0.97 39.88 29.59 68.60 2.03 41.91 16 10 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 11 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 12 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 13 C -0.20 -10.83 8.69 22.73 0.20 -10.63 16 14 C -0.12 -5.98 10.02 22.22 0.22 -5.76 16 15 C -0.23 -9.79 9.68 22.46 0.22 -9.57 16 16 C -0.06 -2.37 4.37 -19.91 -0.09 -2.45 16 17 C -0.12 -3.09 5.26 29.10 0.15 -2.94 16 18 C 0.34 8.89 6.15 29.10 0.18 9.07 16 19 O -0.46 -16.89 13.57 -1.45 -0.02 -16.91 16 20 C -0.08 -1.27 7.07 71.24 0.50 -0.77 16 21 Cl -0.18 -4.29 28.37 -2.72 -0.08 -4.37 16 22 H 0.06 2.18 4.41 -2.39 -0.01 2.17 16 23 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.02 1.02 7.89 -2.39 -0.02 1.00 16 25 H 0.08 2.42 6.01 -2.39 -0.01 2.40 16 26 H 0.05 2.04 6.76 -2.38 -0.02 2.03 16 27 H 0.28 14.06 8.30 -92.71 -0.77 13.29 16 28 H 0.09 5.33 6.21 -2.91 -0.02 5.31 16 29 H 0.10 4.38 8.06 -2.91 -0.02 4.35 16 30 H 0.11 4.11 8.06 -2.91 -0.02 4.08 16 31 H 0.13 2.46 8.05 -2.38 -0.02 2.44 16 32 H 0.13 2.64 6.15 -2.39 -0.01 2.63 16 33 H 0.16 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.16 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -69.48 294.98 5.95 -63.53 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 1.12 Total: 19.01 kcal Atomic # 6 Polarization: -61.10 SS G_CDS: 2.66 Total: -58.44 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.24 Total: -44.73 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.02 Total: -16.91 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Atomic # 17 Polarization: -4.29 SS G_CDS: -0.08 Total: -4.37 kcal Total: -69.48 5.95 -63.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396047886.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.755 kcal (2) G-P(sol) polarization free energy of solvation -69.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds