Wall clock time and date at job start Mon Mar 30 2020 06:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80995 * 1 3 3 C 1.76191 * 100.00302 * 2 1 4 4 C 1.41673 * 120.30962 * 85.98234 * 3 2 1 5 5 C 1.40965 * 120.31266 * 359.74873 * 4 3 2 6 6 H 1.08004 * 119.99810 * 338.38155 * 5 4 3 7 7 C 1.39908 * 120.00099 * 158.37433 * 5 4 3 8 8 N 1.30899 * 119.99737 * 328.20707 * 7 5 4 9 9 Si 1.86799 * 119.99846 * 148.20493 * 7 5 4 10 10 H 1.48497 * 109.46775 * 85.00180 * 9 7 5 11 11 H 1.48499 * 109.46909 * 204.99896 * 9 7 5 12 12 H 1.48499 * 109.47286 * 324.99934 * 9 7 5 13 13 C 1.40711 * 119.37136 * 179.72745 * 4 3 2 14 14 C 1.36440 * 119.95789 * 359.97438 * 13 4 3 15 15 C 1.38925 * 120.62839 * 0.02562 * 14 13 4 16 16 C 1.38092 * 120.64448 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99461 * 179.97438 * 16 15 14 18 18 C 1.53004 * 109.47037 * 93.46346 * 17 16 15 19 19 C 1.50702 * 109.47268 * 184.38894 * 18 17 16 20 20 O 1.20823 * 119.99726 * 359.97438 * 19 18 17 21 21 O 1.34219 * 120.00041 * 180.02562 * 19 18 17 22 22 H 1.09004 * 109.47255 * 184.89558 * 1 2 3 23 23 H 1.08997 * 109.47164 * 304.89553 * 1 2 3 24 24 H 1.09000 * 109.47272 * 64.89583 * 1 2 3 25 25 H 0.96998 * 119.99839 * 179.97438 * 8 7 5 26 26 H 1.07999 * 120.02011 * 179.97438 * 13 4 3 27 27 H 1.08003 * 119.68788 * 180.02562 * 14 13 4 28 28 H 1.08002 * 119.67791 * 180.02562 * 15 14 13 29 29 H 1.08994 * 109.47368 * 213.46412 * 17 16 15 30 30 H 1.08998 * 109.47406 * 333.46556 * 17 16 15 31 31 H 1.08998 * 109.46796 * 304.38429 * 18 17 16 32 32 H 1.08993 * 109.47304 * 64.38722 * 18 17 16 33 33 H 0.96703 * 117.00435 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1160 1.7351 0.0000 4 6 2.1558 2.4541 1.2201 5 6 1.9457 1.7890 2.4450 6 1 1.4229 0.8441 2.4637 7 6 2.4145 2.3528 3.6366 8 7 3.5047 3.0772 3.6333 9 14 1.4846 2.0716 5.2321 10 1 1.9168 0.7860 5.8368 11 1 1.7712 3.1830 6.1744 12 1 0.0269 2.0224 4.9534 13 6 2.4075 3.8384 1.1975 14 6 2.6108 4.4746 0.0078 15 6 2.5716 3.7687 -1.1881 16 6 2.3256 2.4099 -1.1956 17 6 2.2857 1.6587 -2.5015 18 6 3.6687 1.0741 -2.7960 19 6 3.6575 0.4155 -4.1514 20 8 2.6469 0.4133 -4.8136 21 8 4.7698 -0.1697 -4.6224 22 1 -0.3634 -1.0239 0.0877 23 1 -0.3633 0.5879 0.8429 24 1 -0.3634 0.4360 -0.9306 25 1 3.8296 3.4684 4.4593 26 1 2.4397 4.3968 2.1213 27 1 2.8040 5.5371 -0.0044 28 1 2.7350 4.2877 -2.1210 29 1 1.5569 0.8511 -2.4340 30 1 2.0007 2.3393 -3.3037 31 1 4.4103 1.8729 -2.7864 32 1 3.9205 0.3354 -2.0351 33 1 4.7139 -0.5794 -5.4966 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396048124.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:02 Heat of formation + Delta-G solvation = -93.667612 kcal Electronic energy + Delta-G solvation = -17643.407356 eV Core-core repulsion = 14759.154537 eV Total energy + Delta-G solvation = -2884.252819 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.03546 -37.81067 -36.02091 -34.43902 -32.85573 -30.13014 -29.04643 -27.94987 -25.48563 -24.52223 -21.17100 -21.02598 -19.91220 -17.96611 -17.04729 -16.17729 -15.97260 -15.91294 -15.28870 -14.33837 -14.20845 -13.51886 -13.21145 -12.92463 -12.73957 -12.64530 -12.51536 -11.95278 -11.87427 -11.64158 -11.44114 -11.33883 -11.06784 -10.76779 -10.60766 -10.46052 -10.35131 -10.03073 -9.80999 -9.23688 -9.04218 -7.64106 -7.47431 -7.09243 -6.48340 -4.50566 2.36234 2.43375 2.67916 2.97658 2.98744 3.11761 3.23674 3.36290 3.78424 3.86291 4.36602 5.25584 5.42445 5.47999 5.68281 5.86689 5.92954 5.96958 6.09354 6.16283 6.39682 6.42975 6.49997 6.58170 6.70965 6.84293 6.99068 7.21985 7.39258 7.68843 7.78198 7.95873 8.06360 8.09901 8.41976 8.66236 8.77832 9.85657 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026165 B = 0.005801 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.854688 B = 4825.198406 C = 5289.282836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.164 6.164 3 C -0.239 4.239 4 C 0.145 3.855 5 C -0.440 4.440 6 H 0.097 0.903 7 C 0.086 3.914 8 N -0.758 5.758 9 Si 0.900 3.100 10 H -0.264 1.264 11 H -0.275 1.275 12 H -0.257 1.257 13 C -0.173 4.173 14 C -0.082 4.082 15 C -0.254 4.254 16 C -0.005 4.005 17 C -0.063 4.063 18 C -0.102 4.102 19 C 0.481 3.519 20 O -0.522 6.522 21 O -0.521 6.521 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.286 0.714 26 H 0.107 0.893 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.086 -2.615 -5.771 6.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.069 5.931 3 C -0.352 4.352 4 C 0.139 3.861 5 C -0.467 4.467 6 H 0.115 0.885 7 C -0.137 4.137 8 N -0.379 5.379 9 Si 0.723 3.277 10 H -0.189 1.189 11 H -0.200 1.200 12 H -0.181 1.181 13 C -0.193 4.193 14 C -0.101 4.101 15 C -0.275 4.275 16 C -0.008 4.008 17 C -0.100 4.100 18 C -0.139 4.139 19 C 0.324 3.676 20 O -0.410 6.410 21 O -0.332 6.332 22 H 0.097 0.903 23 H 0.092 0.908 24 H 0.081 0.919 25 H 0.097 0.903 26 H 0.125 0.875 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 0.541 -3.277 -5.403 6.342 hybrid contribution -1.106 0.938 0.267 1.474 sum -0.565 -2.339 -5.136 5.672 Atomic orbital electron populations 1.23470 0.98991 1.04104 1.04299 1.84649 1.04323 1.07067 1.97075 1.21064 1.25464 0.93816 0.94852 1.17640 0.85751 0.91248 0.91469 1.19760 1.30460 1.06452 0.90038 0.88522 1.26076 0.93195 0.92655 1.01806 1.69954 1.14868 1.22461 1.30659 0.86445 0.81759 0.79213 0.80270 1.18896 1.19950 1.18080 1.20873 1.07558 0.94511 0.96393 1.20449 0.98752 0.97565 0.93290 1.20111 1.17403 0.93522 0.96444 1.19384 0.96134 0.93094 0.92209 1.20371 0.94800 0.99668 0.95195 1.21398 1.01156 1.01359 0.90014 1.23917 0.79884 0.74774 0.89003 1.90681 1.33829 1.56868 1.59621 1.84595 1.40512 1.68407 1.39709 0.90265 0.90757 0.91932 0.90256 0.87519 0.89286 0.89153 0.90019 0.91658 0.87945 0.87029 0.73924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 10.50 101.05 1.06 -1.48 16 2 S -0.16 -3.41 19.04 -107.50 -2.05 -5.46 16 3 C -0.24 -5.56 5.59 -38.03 -0.21 -5.77 16 4 C 0.14 3.65 5.59 -106.62 -0.60 3.05 16 5 C -0.44 -10.99 8.43 -37.92 -0.32 -11.31 16 6 H 0.10 2.38 7.03 -52.48 -0.37 2.01 16 7 C 0.09 2.03 4.80 -17.32 -0.08 1.95 16 8 N -0.76 -18.36 11.71 55.55 0.65 -17.71 16 9 Si 0.90 17.50 29.66 -169.99 -5.04 12.45 16 10 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 11 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 12 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 13 C -0.17 -4.24 8.73 -39.30 -0.34 -4.59 16 14 C -0.08 -1.83 9.96 -39.98 -0.40 -2.23 16 15 C -0.25 -5.42 9.67 -39.38 -0.38 -5.80 16 16 C -0.01 -0.11 5.15 -104.44 -0.54 -0.65 16 17 C -0.06 -1.14 4.18 -27.88 -0.12 -1.26 16 18 C -0.10 -1.63 5.79 -27.88 -0.16 -1.79 16 19 C 0.48 7.21 8.33 36.01 0.30 7.51 16 20 O -0.52 -9.13 16.69 -18.75 -0.31 -9.44 16 21 O -0.52 -6.21 13.42 -39.23 -0.53 -6.73 16 22 H 0.08 1.23 8.14 -51.91 -0.42 0.80 16 23 H 0.07 1.41 8.14 -51.92 -0.42 0.98 16 24 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 25 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 26 H 0.11 2.66 6.48 -52.49 -0.34 2.32 16 27 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 28 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 29 H 0.08 1.54 6.96 -51.93 -0.36 1.18 16 30 H 0.06 1.15 7.90 -51.93 -0.41 0.74 16 31 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 32 H 0.11 1.86 7.92 -51.93 -0.41 1.45 16 33 H 0.40 2.89 9.10 45.56 0.41 3.30 16 LS Contribution 300.92 15.07 4.53 4.53 Total: -1.00 -28.00 300.92 -7.68 -35.68 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -3.15 Total: 9.03 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -1.79 Total: -22.36 kcal Atomic # 7 Polarization: -18.36 SS G_CDS: 0.65 Total: -17.71 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.84 Total: -16.17 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.04 Total: 12.45 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -2.05 Total: -5.46 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.00 -7.68 -35.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396048124.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.991 kcal (2) G-P(sol) polarization free energy of solvation -27.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds