Wall clock time and date at job start Mon Mar 30 2020 06:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80995 * 1 3 3 C 1.76191 * 100.00302 * 2 1 4 4 C 1.41673 * 120.30962 * 85.98234 * 3 2 1 5 5 C 1.40965 * 120.31266 * 359.74873 * 4 3 2 6 6 H 1.08004 * 119.99810 * 338.38155 * 5 4 3 7 7 C 1.39908 * 120.00099 * 158.37433 * 5 4 3 8 8 N 1.30899 * 119.99737 * 328.20707 * 7 5 4 9 9 Si 1.86799 * 119.99846 * 148.20493 * 7 5 4 10 10 H 1.48497 * 109.46775 * 85.00180 * 9 7 5 11 11 H 1.48499 * 109.46909 * 204.99896 * 9 7 5 12 12 H 1.48499 * 109.47286 * 324.99934 * 9 7 5 13 13 C 1.40711 * 119.37136 * 179.72745 * 4 3 2 14 14 C 1.36440 * 119.95789 * 359.97438 * 13 4 3 15 15 C 1.38925 * 120.62839 * 0.02562 * 14 13 4 16 16 C 1.38092 * 120.64448 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99461 * 179.97438 * 16 15 14 18 18 C 1.53004 * 109.47037 * 93.46346 * 17 16 15 19 19 C 1.50702 * 109.47268 * 184.38894 * 18 17 16 20 20 O 1.20823 * 119.99726 * 359.97438 * 19 18 17 21 21 O 1.34219 * 120.00041 * 180.02562 * 19 18 17 22 22 H 1.09004 * 109.47255 * 184.89558 * 1 2 3 23 23 H 1.08997 * 109.47164 * 304.89553 * 1 2 3 24 24 H 1.09000 * 109.47272 * 64.89583 * 1 2 3 25 25 H 0.96998 * 119.99839 * 179.97438 * 8 7 5 26 26 H 1.07999 * 120.02011 * 179.97438 * 13 4 3 27 27 H 1.08003 * 119.68788 * 180.02562 * 14 13 4 28 28 H 1.08002 * 119.67791 * 180.02562 * 15 14 13 29 29 H 1.08994 * 109.47368 * 213.46412 * 17 16 15 30 30 H 1.08998 * 109.47406 * 333.46556 * 17 16 15 31 31 H 1.08998 * 109.46796 * 304.38429 * 18 17 16 32 32 H 1.08993 * 109.47304 * 64.38722 * 18 17 16 33 33 H 0.96703 * 117.00435 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1160 1.7351 0.0000 4 6 2.1558 2.4541 1.2201 5 6 1.9457 1.7890 2.4450 6 1 1.4229 0.8441 2.4637 7 6 2.4145 2.3528 3.6366 8 7 3.5047 3.0772 3.6333 9 14 1.4846 2.0716 5.2321 10 1 1.9168 0.7860 5.8368 11 1 1.7712 3.1830 6.1744 12 1 0.0269 2.0224 4.9534 13 6 2.4075 3.8384 1.1975 14 6 2.6108 4.4746 0.0078 15 6 2.5716 3.7687 -1.1881 16 6 2.3256 2.4099 -1.1956 17 6 2.2857 1.6587 -2.5015 18 6 3.6687 1.0741 -2.7960 19 6 3.6575 0.4155 -4.1514 20 8 2.6469 0.4133 -4.8136 21 8 4.7698 -0.1697 -4.6224 22 1 -0.3634 -1.0239 0.0877 23 1 -0.3633 0.5879 0.8429 24 1 -0.3634 0.4360 -0.9306 25 1 3.8296 3.4684 4.4593 26 1 2.4397 4.3968 2.1213 27 1 2.8040 5.5371 -0.0044 28 1 2.7350 4.2877 -2.1210 29 1 1.5569 0.8511 -2.4340 30 1 2.0007 2.3393 -3.3037 31 1 4.4103 1.8729 -2.7864 32 1 3.9205 0.3354 -2.0351 33 1 4.7139 -0.5794 -5.4966 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396048124.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:01 Heat of formation + Delta-G solvation = -108.551909 kcal Electronic energy + Delta-G solvation = -17644.052788 eV Core-core repulsion = 14759.154537 eV Total energy + Delta-G solvation = -2884.898251 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.21568 -39.51015 -37.14277 -36.10328 -34.43421 -31.89787 -30.60312 -29.44532 -27.26204 -25.98839 -22.80902 -22.53054 -21.43222 -19.20841 -18.67331 -17.70220 -17.40413 -17.21930 -16.89308 -15.93535 -15.84303 -15.14609 -14.50177 -14.46760 -14.20173 -14.16302 -14.06302 -13.49149 -13.44952 -13.21945 -13.03040 -12.64677 -12.49796 -12.34559 -12.19040 -12.00992 -11.70749 -11.58255 -11.48541 -10.95771 -10.76940 -9.42659 -9.20889 -8.83570 -8.13106 -6.34045 0.68091 0.99288 1.25154 1.37625 1.46479 1.55003 1.58819 2.15206 2.18065 2.24934 2.62797 3.63591 4.03449 4.12716 4.21989 4.44886 4.47973 4.54297 4.65510 4.72599 4.84169 4.89729 4.99359 5.07073 5.18972 5.22763 5.48208 5.61549 5.67407 5.93271 5.99767 6.17718 6.32206 6.61367 6.84969 6.97822 7.06151 8.14658 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026165 B = 0.005801 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.854688 B = 4825.198406 C = 5289.282836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.173 6.173 3 C -0.255 4.255 4 C 0.117 3.883 5 C -0.472 4.472 6 H 0.091 0.909 7 C 0.051 3.949 8 N -0.791 5.791 9 Si 0.969 3.031 10 H -0.258 1.258 11 H -0.265 1.265 12 H -0.259 1.259 13 C -0.203 4.203 14 C -0.083 4.083 15 C -0.257 4.257 16 C -0.008 4.008 17 C -0.054 4.054 18 C -0.099 4.099 19 C 0.494 3.506 20 O -0.548 6.548 21 O -0.512 6.512 22 H 0.108 0.892 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.295 0.705 26 H 0.092 0.908 27 H 0.111 0.889 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.245 -3.152 -6.636 7.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S 0.059 5.941 3 C -0.368 4.368 4 C 0.112 3.888 5 C -0.499 4.499 6 H 0.109 0.891 7 C -0.170 4.170 8 N -0.414 5.414 9 Si 0.789 3.211 10 H -0.183 1.183 11 H -0.189 1.189 12 H -0.183 1.183 13 C -0.224 4.224 14 C -0.101 4.101 15 C -0.277 4.277 16 C -0.011 4.011 17 C -0.092 4.092 18 C -0.137 4.137 19 C 0.339 3.661 20 O -0.439 6.439 21 O -0.325 6.325 22 H 0.127 0.873 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.130 0.870 28 H 0.135 0.865 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.122 0.878 33 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 0.411 -3.819 -6.293 7.373 hybrid contribution -1.010 1.063 0.389 1.517 sum -0.599 -2.756 -5.904 6.543 Atomic orbital electron populations 1.23447 0.96295 1.05868 1.04150 1.84500 1.06910 1.05591 1.97091 1.21374 1.25292 0.95129 0.94998 1.17996 0.86429 0.91896 0.92524 1.19889 1.31926 1.06958 0.91097 0.89115 1.26814 0.93443 0.92139 1.04569 1.69966 1.15964 1.23473 1.31961 0.85419 0.79971 0.79445 0.76283 1.18281 1.18890 1.18289 1.20863 1.10115 0.94660 0.96744 1.20746 0.97599 0.98834 0.92968 1.20464 1.16404 0.93753 0.97118 1.19741 0.94794 0.93470 0.93047 1.20267 0.96038 0.99292 0.93604 1.21244 0.99991 1.01633 0.90819 1.23473 0.79990 0.74395 0.88286 1.90683 1.34905 1.58057 1.60280 1.84523 1.38763 1.67846 1.41414 0.87325 0.91979 0.91168 0.89448 0.89016 0.87047 0.86479 0.90681 0.90851 0.86881 0.87762 0.71158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.53 10.50 113.37 1.19 -3.34 16 2 S -0.17 -7.14 19.04 -56.49 -1.08 -8.22 16 3 C -0.25 -11.93 5.59 23.27 0.13 -11.80 16 4 C 0.12 6.04 5.59 -21.16 -0.12 5.92 16 5 C -0.47 -24.18 8.43 23.34 0.20 -23.99 16 6 H 0.09 4.59 7.03 -2.91 -0.02 4.57 16 7 C 0.05 2.45 4.80 85.24 0.41 2.86 16 8 N -0.79 -39.25 11.71 21.82 0.26 -38.99 16 9 Si 0.97 36.21 29.66 68.60 2.03 38.25 16 10 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 11 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 12 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 13 C -0.20 -10.23 8.73 22.45 0.20 -10.03 16 14 C -0.08 -3.69 9.96 22.01 0.22 -3.47 16 15 C -0.26 -10.64 9.67 22.40 0.22 -10.43 16 16 C -0.01 -0.32 5.15 -19.75 -0.10 -0.42 16 17 C -0.05 -1.90 4.18 29.85 0.12 -1.77 16 18 C -0.10 -3.01 5.79 29.85 0.17 -2.84 16 19 C 0.49 13.70 8.33 71.24 0.59 14.29 16 20 O -0.55 -18.06 16.69 21.97 0.37 -17.69 16 21 O -0.51 -10.70 13.42 -51.31 -0.69 -11.39 16 22 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 23 H 0.06 2.32 8.14 -2.40 -0.02 2.30 16 24 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.29 13.06 8.30 -92.71 -0.77 12.29 16 26 H 0.09 4.77 6.48 -2.91 -0.02 4.75 16 27 H 0.11 4.31 8.06 -2.91 -0.02 4.28 16 28 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 29 H 0.07 2.73 6.96 -2.39 -0.02 2.71 16 30 H 0.07 2.44 7.90 -2.39 -0.02 2.42 16 31 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 32 H 0.10 3.35 7.92 -2.39 -0.02 3.33 16 33 H 0.43 4.72 9.10 -74.06 -0.67 4.05 16 Total: -1.00 -60.42 300.92 4.58 -55.84 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.46 Total: 27.22 kcal Atomic # 6 Polarization: -48.24 SS G_CDS: 3.23 Total: -45.01 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.26 Total: -38.99 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.32 Total: -29.08 kcal Atomic # 14 Polarization: 36.21 SS G_CDS: 2.03 Total: 38.25 kcal Atomic # 16 Polarization: -7.14 SS G_CDS: -1.08 Total: -8.22 kcal Total: -60.42 4.58 -55.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396048124.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.713 kcal (2) G-P(sol) polarization free energy of solvation -60.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds