Wall clock time and date at job start Mon Mar 30 2020 07:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47221 * 2 1 4 4 C 1.38663 * 119.87332 * 270.25148 * 3 2 1 5 5 C 1.38612 * 120.50052 * 180.26035 * 4 3 2 6 6 C 1.37639 * 120.24663 * 359.48881 * 5 4 3 7 7 C 1.50699 * 120.12694 * 180.28207 * 6 5 4 8 8 C 1.50706 * 109.46608 * 264.99573 * 7 6 5 9 9 O 1.20755 * 119.99926 * 0.02562 * 8 7 6 10 10 C 1.50696 * 119.99747 * 180.02562 * 8 7 6 11 11 Cl 1.80306 * 109.47107 * 179.97438 * 10 8 7 12 12 C 1.40699 * 119.74436 * 0.24972 * 6 5 4 13 13 C 1.41395 * 120.24479 * 180.02562 * 12 6 5 14 14 H 1.08006 * 119.99922 * 334.05110 * 13 12 6 15 15 C 1.39945 * 120.00239 * 154.05471 * 13 12 6 16 16 N 1.30826 * 119.99644 * 343.65806 * 15 13 12 17 17 Si 1.86803 * 120.00211 * 163.66299 * 15 13 12 18 18 H 1.48497 * 109.47319 * 89.99772 * 17 15 13 19 19 H 1.48498 * 109.46771 * 209.99810 * 17 15 13 20 20 H 1.48505 * 109.46892 * 329.99781 * 17 15 13 21 21 C 1.37589 * 119.87702 * 90.00185 * 3 2 1 22 22 H 1.08998 * 109.47557 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47258 * 300.00365 * 1 2 3 24 24 H 1.09000 * 109.47121 * 59.99900 * 1 2 3 25 25 H 1.08999 * 109.46912 * 239.99794 * 2 1 3 26 26 H 1.09000 * 109.47121 * 120.00100 * 2 1 3 27 27 H 1.08000 * 119.74892 * 0.02562 * 4 3 2 28 28 H 1.07994 * 119.87743 * 179.76153 * 5 4 3 29 29 H 1.08992 * 109.47390 * 24.99450 * 7 6 5 30 30 H 1.09001 * 109.47469 * 145.00052 * 7 6 5 31 31 H 1.08999 * 109.47087 * 299.99698 * 10 8 7 32 32 H 1.08996 * 109.47634 * 59.99995 * 10 8 7 33 33 H 0.96997 * 119.99687 * 179.97438 * 16 15 13 34 34 H 1.07998 * 120.12969 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2576 2.0737 -1.2024 5 6 2.7247 3.3787 -1.2176 6 6 2.9601 4.0446 -0.0362 7 6 3.4619 5.4655 -0.0559 8 6 4.9644 5.4692 0.0611 9 8 5.5656 4.4257 0.1507 10 6 5.7165 6.7750 0.0663 11 17 7.4836 6.4503 0.2181 12 6 2.7299 3.3938 1.1898 13 6 2.9678 4.0681 2.4097 14 1 3.6863 4.8734 2.4504 15 6 2.2723 3.6919 3.5643 16 7 1.1938 2.9576 3.4682 17 14 2.8837 4.2384 5.2427 18 1 2.2651 5.5417 5.5947 19 1 2.5109 3.2228 6.2600 20 1 4.3610 4.3850 5.2077 21 6 2.2608 2.0670 1.1930 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.0713 1.5603 -2.1341 28 1 2.9003 3.8763 -2.1598 29 1 3.1692 5.9412 -0.9918 30 1 3.0310 6.0147 0.7812 31 1 5.5235 7.3091 -0.8641 32 1 5.3853 7.3818 0.9090 33 1 0.7119 2.6966 4.2685 34 1 2.0813 1.5578 2.1284 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396048148.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:51 Heat of formation + Delta-G solvation = -62.948325 kcal Electronic energy + Delta-G solvation = -17802.944104 eV Core-core repulsion = 14917.979667 eV Total energy + Delta-G solvation = -2884.964437 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.62920 -39.27028 -36.84051 -35.86380 -34.90771 -32.33080 -31.36331 -30.30438 -27.83873 -26.68758 -23.82470 -22.90870 -21.21049 -20.30725 -18.77690 -17.20750 -16.92623 -16.62930 -16.43894 -15.76872 -15.72834 -15.16073 -14.56019 -14.39329 -14.22863 -14.09047 -13.83661 -13.44849 -13.19440 -12.83707 -12.68358 -12.64142 -12.49652 -12.24714 -12.01393 -11.83570 -11.80288 -11.42165 -11.21587 -11.07157 -10.95414 -10.49037 -9.18709 -8.93706 -8.55474 -6.26599 0.99195 1.12968 1.15609 1.29983 1.37143 1.47243 1.54773 2.20395 2.77949 3.08763 3.80955 4.17514 4.18659 4.23639 4.28689 4.36666 4.53665 4.64992 4.69255 4.76371 4.84487 4.94183 5.03072 5.09957 5.17882 5.23612 5.41522 5.45058 5.66422 5.83926 6.09322 6.20748 6.31784 6.46292 6.71171 6.79459 7.02045 7.16203 8.38679 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.014175 B = 0.007664 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.854859 B = 3652.608967 C = 5223.122326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.075 4.075 3 C -0.082 4.082 4 C -0.241 4.241 5 C -0.093 4.093 6 C -0.201 4.201 7 C -0.098 4.098 8 C 0.342 3.658 9 O -0.467 6.467 10 C -0.080 4.080 11 Cl -0.185 7.185 12 C 0.094 3.906 13 C -0.485 4.485 14 H 0.074 0.926 15 C 0.038 3.962 16 N -0.824 5.824 17 Si 0.965 3.035 18 H -0.255 1.255 19 H -0.272 1.272 20 H -0.267 1.267 21 C -0.188 4.188 22 H 0.074 0.926 23 H 0.034 0.966 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.109 0.891 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.106 0.894 31 H 0.163 0.837 32 H 0.149 0.851 33 H 0.284 0.716 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.839 6.471 -4.776 8.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.113 4.113 3 C -0.082 4.082 4 C -0.260 4.260 5 C -0.111 4.111 6 C -0.202 4.202 7 C -0.135 4.135 8 C 0.217 3.783 9 O -0.340 6.340 10 C -0.143 4.143 11 Cl -0.158 7.158 12 C 0.092 3.908 13 C -0.515 4.515 14 H 0.092 0.908 15 C -0.177 4.177 16 N -0.451 5.451 17 Si 0.787 3.213 18 H -0.179 1.179 19 H -0.197 1.197 20 H -0.191 1.191 21 C -0.208 4.208 22 H 0.093 0.907 23 H 0.053 0.947 24 H 0.072 0.928 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.127 0.873 28 H 0.134 0.866 29 H 0.141 0.859 30 H 0.124 0.876 31 H 0.180 0.820 32 H 0.167 0.833 33 H 0.094 0.906 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.098 5.786 -4.575 7.669 hybrid contribution 0.163 -0.023 1.009 1.023 sum 2.262 5.763 -3.566 7.144 Atomic orbital electron populations 1.21606 0.94345 1.01731 1.01151 1.20443 0.96671 0.92747 1.01418 1.19872 0.98769 0.96142 0.93414 1.20569 1.12536 0.96727 0.96171 1.20742 0.98833 0.94854 0.96648 1.19633 1.11445 0.96269 0.92848 1.20745 0.91738 0.95717 1.05277 1.25259 0.92476 0.89948 0.70638 1.90451 1.71587 1.36734 1.35230 1.25224 0.79975 0.98843 1.10234 1.98724 1.21176 1.96937 1.98969 1.17751 0.88881 0.91327 0.92824 1.19622 1.21103 1.17191 0.93571 0.90784 1.26614 0.93239 0.93554 1.04299 1.69891 1.13198 1.29630 1.32337 0.85449 0.79502 0.79306 0.77024 1.17879 1.19698 1.19097 1.21151 1.07944 0.95599 0.96084 0.90718 0.94668 0.92782 0.90700 0.92984 0.87279 0.86571 0.85907 0.87627 0.81969 0.83283 0.90579 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 9.89 71.98 0.71 -3.76 16 2 C -0.08 -2.90 6.05 29.85 0.18 -2.72 16 3 C -0.08 -3.85 5.13 -19.92 -0.10 -3.95 16 4 C -0.24 -10.63 9.70 22.46 0.22 -10.41 16 5 C -0.09 -4.00 9.66 22.22 0.21 -3.78 16 6 C -0.20 -9.15 4.43 -19.40 -0.09 -9.23 16 7 C -0.10 -3.33 5.12 29.10 0.15 -3.18 16 8 C 0.34 11.47 6.84 29.10 0.20 11.67 16 9 O -0.47 -20.72 15.69 -1.44 -0.02 -20.74 16 10 C -0.08 -1.78 7.07 71.23 0.50 -1.28 16 11 Cl -0.18 -5.23 28.37 -2.72 -0.08 -5.31 16 12 C 0.09 5.00 5.56 -21.29 -0.12 4.88 16 13 C -0.49 -25.34 8.14 23.46 0.19 -25.15 16 14 H 0.07 3.68 6.68 -2.91 -0.02 3.66 16 15 C 0.04 1.88 5.16 85.26 0.44 2.32 16 16 N -0.82 -43.11 10.97 21.83 0.24 -42.87 16 17 Si 0.97 38.51 29.59 68.60 2.03 40.54 16 18 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 19 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 20 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 21 C -0.19 -10.12 8.32 22.73 0.19 -9.93 16 22 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 23 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 24 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.07 2.52 8.09 -2.39 -0.02 2.50 16 26 H 0.05 2.02 8.08 -2.39 -0.02 2.00 16 27 H 0.11 4.19 8.06 -2.91 -0.02 4.17 16 28 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 29 H 0.12 3.12 8.05 -2.39 -0.02 3.10 16 30 H 0.11 3.55 7.06 -2.39 -0.02 3.53 16 31 H 0.16 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.15 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.28 13.58 8.30 -92.71 -0.77 12.81 16 34 H 0.09 5.30 6.22 -2.91 -0.02 5.29 16 Total: -1.00 -66.53 306.31 5.96 -60.58 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 1.10 Total: 22.33 kcal Atomic # 6 Polarization: -57.21 SS G_CDS: 2.69 Total: -54.52 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.24 Total: -42.87 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.02 Total: -20.74 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Atomic # 17 Polarization: -5.23 SS G_CDS: -0.08 Total: -5.31 kcal Total: -66.53 5.96 -60.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396048148.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.372 kcal (2) G-P(sol) polarization free energy of solvation -66.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds