Wall clock time and date at job start Mon Mar 30 2020 07:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50694 * 109.47328 * 2 1 4 4 C 1.40463 * 120.22092 * 96.02731 * 3 2 1 5 5 C 1.41443 * 120.16268 * 359.97438 * 4 3 2 6 6 H 1.08004 * 120.00031 * 325.59572 * 5 4 3 7 7 C 1.39939 * 119.99861 * 145.59278 * 5 4 3 8 8 N 1.30825 * 120.00089 * 2.93703 * 7 5 4 9 9 Si 1.86804 * 120.00013 * 182.93256 * 7 5 4 10 10 H 1.48503 * 109.47047 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46995 * 119.99794 * 9 7 5 12 12 H 1.48498 * 109.47247 * 240.00338 * 9 7 5 13 13 C 1.40769 * 119.67070 * 180.02562 * 4 3 2 14 14 C 1.37798 * 120.09940 * 359.97438 * 13 4 3 15 15 C 1.38249 * 120.44278 * 0.25649 * 14 13 4 16 16 C 1.39294 * 120.21868 * 276.04816 * 3 2 1 17 17 C 1.47218 * 120.04936 * 359.97271 * 16 3 2 18 18 O 1.21250 * 120.00238 * 6.51331 * 17 16 3 19 19 C 1.50697 * 120.00006 * 186.50477 * 17 16 3 20 20 H 1.08998 * 109.47427 * 166.25656 * 19 17 16 21 21 C 1.52996 * 109.47427 * 286.25946 * 19 17 16 22 22 Cl 1.80305 * 109.46999 * 46.25776 * 19 17 16 23 23 H 1.09002 * 109.47387 * 300.00124 * 1 2 3 24 24 H 1.09002 * 109.47052 * 60.00129 * 1 2 3 25 25 H 1.08998 * 109.47626 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46974 * 239.99543 * 2 1 3 27 27 H 1.09002 * 109.47052 * 119.99871 * 2 1 3 28 28 H 0.96994 * 120.00171 * 179.97438 * 8 7 5 29 29 H 1.08007 * 119.95039 * 180.02562 * 13 4 3 30 30 H 1.07999 * 119.78002 * 179.97438 * 14 13 4 31 31 H 1.08005 * 119.83731 * 179.72531 * 15 14 13 32 32 H 1.08995 * 109.47751 * 59.99704 * 21 19 17 33 33 H 1.09003 * 109.47258 * 180.02562 * 21 19 17 34 34 H 1.09000 * 109.47052 * 299.99331 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3882 2.0448 1.2070 5 6 2.2764 1.3429 2.4299 6 1 1.4766 0.6312 2.5729 7 6 3.2020 1.5706 3.4545 8 7 4.1362 2.4738 3.3032 9 14 3.1035 0.5849 5.0382 10 1 1.9659 -0.3663 4.9593 11 1 4.3674 -0.1707 5.2303 12 1 2.8993 1.5076 6.1837 13 6 2.8556 3.3726 1.1936 14 6 2.9635 4.0552 0.0015 15 6 2.6099 3.4469 -1.1885 16 6 2.1465 2.1240 -1.1970 17 6 1.7767 1.4803 -2.4683 18 8 1.2623 0.3823 -2.4648 19 6 2.0372 2.1862 -3.7740 20 1 1.9317 1.4791 -4.5967 21 6 1.0304 3.3250 -3.9479 22 17 3.7102 2.8585 -3.7703 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.7775 2.6319 4.0135 29 1 3.1308 3.8567 2.1191 30 1 3.3223 5.0739 -0.0027 31 1 2.6942 3.9926 -2.1168 32 1 1.1358 4.0322 -3.1253 33 1 1.2186 3.8352 -4.8926 34 1 0.0190 2.9185 -3.9503 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396049383.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:37 Heat of formation + Delta-G solvation = -38.097250 kcal Electronic energy + Delta-G solvation = -18271.127586 eV Core-core repulsion = 15387.240772 eV Total energy + Delta-G solvation = -2883.886814 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.55210 -37.19004 -36.01419 -33.70884 -33.07389 -32.17736 -29.67787 -28.53836 -25.39776 -24.81208 -22.73728 -21.78921 -19.86828 -18.96382 -17.09942 -15.87580 -15.68186 -15.05573 -14.57793 -14.46196 -13.97096 -13.76429 -13.02401 -12.86210 -12.47897 -12.33787 -12.25408 -11.94755 -11.62709 -11.43518 -11.28115 -11.15796 -10.87518 -10.76922 -10.66801 -10.37163 -10.22399 -9.96719 -9.83970 -9.42850 -9.09918 -8.60870 -7.52383 -7.31474 -6.65799 -4.42444 1.57823 2.34830 2.73728 3.08349 3.10312 3.14803 3.47490 3.95681 4.31077 4.64070 4.87286 4.94644 5.47655 5.52123 5.65400 5.83947 5.96448 6.08755 6.11977 6.30955 6.40181 6.43056 6.77414 6.82654 6.85498 6.99000 7.08989 7.18247 7.27152 7.41593 7.70074 7.84665 7.98317 8.07671 8.20013 8.55439 8.84919 8.89096 10.26650 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026408 B = 0.006546 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.035298 B = 4276.668154 C = 4923.907999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.074 4.074 3 C -0.100 4.100 4 C 0.089 3.911 5 C -0.458 4.458 6 H 0.079 0.921 7 C 0.070 3.930 8 N -0.815 5.815 9 Si 0.912 3.088 10 H -0.262 1.262 11 H -0.275 1.275 12 H -0.275 1.275 13 C -0.118 4.118 14 C -0.131 4.131 15 C -0.171 4.171 16 C -0.159 4.159 17 C 0.396 3.604 18 O -0.450 6.450 19 C -0.047 4.047 20 H 0.114 0.886 21 C -0.156 4.156 22 Cl -0.152 7.152 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.039 0.961 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.277 0.723 29 H 0.131 0.869 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.172 1.517 -8.327 9.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.111 4.111 3 C -0.101 4.101 4 C 0.087 3.913 5 C -0.489 4.489 6 H 0.097 0.903 7 C -0.144 4.144 8 N -0.442 5.442 9 Si 0.737 3.263 10 H -0.185 1.185 11 H -0.200 1.200 12 H -0.200 1.200 13 C -0.137 4.137 14 C -0.150 4.150 15 C -0.190 4.190 16 C -0.160 4.160 17 C 0.276 3.724 18 O -0.327 6.327 19 C -0.092 4.092 20 H 0.132 0.868 21 C -0.213 4.213 22 Cl -0.126 7.126 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.149 0.851 30 H 0.112 0.888 31 H 0.128 0.872 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.124 1.082 -8.192 8.834 hybrid contribution 0.401 -0.198 0.671 0.806 sum -2.723 0.885 -7.521 8.047 Atomic orbital electron populations 1.21539 0.96435 0.99737 1.00750 1.20434 0.94922 0.94029 1.01704 1.20235 1.03299 0.95038 0.91563 1.17486 0.90997 0.91235 0.91621 1.19515 1.11402 1.20971 0.97022 0.90260 1.25840 0.94340 0.94671 0.99589 1.69721 1.13285 1.28062 1.33173 0.86190 0.79157 0.80085 0.80865 1.18526 1.20011 1.20007 1.21846 1.00550 0.94127 0.97221 1.20745 1.02213 0.98629 0.93379 1.21072 1.05804 0.94554 0.97599 1.19458 1.08555 0.95898 0.92127 1.22505 0.74810 0.85325 0.89737 1.90467 1.33805 1.19329 1.89145 1.24698 0.84788 0.99073 1.00630 0.86831 1.22134 0.97613 0.97379 1.04167 1.98727 1.27554 1.87315 1.98956 0.93485 0.93462 0.94214 0.91252 0.91662 0.91162 0.85144 0.88799 0.87213 0.89694 0.90772 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.46 37.16 0.35 -2.14 16 2 C -0.07 -1.62 4.87 -27.89 -0.14 -1.75 16 3 C -0.10 -2.36 5.24 -103.40 -0.54 -2.90 16 4 C 0.09 2.26 5.54 -106.88 -0.59 1.67 16 5 C -0.46 -11.74 7.88 -37.73 -0.30 -12.04 16 6 H 0.08 1.98 7.09 -52.48 -0.37 1.61 16 7 C 0.07 1.73 5.41 -17.34 -0.09 1.64 16 8 N -0.81 -20.70 10.62 55.55 0.59 -20.11 16 9 Si 0.91 18.77 29.56 -169.99 -5.02 13.74 16 10 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 11 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 12 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 13 C -0.12 -2.91 8.66 -38.79 -0.34 -3.25 16 14 C -0.13 -2.87 10.00 -39.74 -0.40 -3.27 16 15 C -0.17 -3.48 7.69 -38.85 -0.30 -3.78 16 16 C -0.16 -3.41 5.69 -105.13 -0.60 -4.00 16 17 C 0.40 7.40 6.08 -30.66 -0.19 7.21 16 18 O -0.45 -9.04 12.46 5.58 0.07 -8.97 16 19 C -0.05 -0.68 3.49 -27.89 -0.10 -0.78 16 20 H 0.11 1.44 8.13 -51.93 -0.42 1.02 16 21 C -0.16 -1.86 9.10 37.16 0.34 -1.52 16 22 Cl -0.15 -2.34 25.25 -51.86 -1.31 -3.65 16 23 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 24 H 0.05 0.92 6.81 -51.93 -0.35 0.57 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.52 5.82 -51.93 -0.30 1.22 16 27 H 0.06 1.46 6.62 -51.93 -0.34 1.12 16 28 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 29 H 0.13 3.36 6.15 -52.48 -0.32 3.04 16 30 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 31 H 0.11 1.95 4.09 -52.48 -0.21 1.73 16 32 H 0.08 1.10 5.96 -51.93 -0.31 0.79 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 287.93 15.07 4.34 4.34 Total: -1.00 -26.65 287.93 -8.11 -34.76 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -3.89 Total: 4.81 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -2.89 Total: -24.92 kcal Atomic # 7 Polarization: -20.70 SS G_CDS: 0.59 Total: -20.11 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.07 Total: -8.97 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.74 kcal Atomic # 17 Polarization: -2.34 SS G_CDS: -1.31 Total: -3.65 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -26.65 -8.11 -34.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396049383.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.338 kcal (2) G-P(sol) polarization free energy of solvation -26.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds