Wall clock time and date at job start Mon Mar 30 2020 07:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50694 * 109.47328 * 2 1 4 4 C 1.40463 * 120.22092 * 96.02731 * 3 2 1 5 5 C 1.41443 * 120.16268 * 359.97438 * 4 3 2 6 6 H 1.08004 * 120.00031 * 325.59572 * 5 4 3 7 7 C 1.39939 * 119.99861 * 145.59278 * 5 4 3 8 8 N 1.30825 * 120.00089 * 2.93703 * 7 5 4 9 9 Si 1.86804 * 120.00013 * 182.93256 * 7 5 4 10 10 H 1.48503 * 109.47047 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46995 * 119.99794 * 9 7 5 12 12 H 1.48498 * 109.47247 * 240.00338 * 9 7 5 13 13 C 1.40769 * 119.67070 * 180.02562 * 4 3 2 14 14 C 1.37798 * 120.09940 * 359.97438 * 13 4 3 15 15 C 1.38249 * 120.44278 * 0.25649 * 14 13 4 16 16 C 1.39294 * 120.21868 * 276.04816 * 3 2 1 17 17 C 1.47218 * 120.04936 * 359.97271 * 16 3 2 18 18 O 1.21250 * 120.00238 * 6.51331 * 17 16 3 19 19 C 1.50697 * 120.00006 * 186.50477 * 17 16 3 20 20 H 1.08998 * 109.47427 * 166.25656 * 19 17 16 21 21 C 1.52996 * 109.47427 * 286.25946 * 19 17 16 22 22 Cl 1.80305 * 109.46999 * 46.25776 * 19 17 16 23 23 H 1.09002 * 109.47387 * 300.00124 * 1 2 3 24 24 H 1.09002 * 109.47052 * 60.00129 * 1 2 3 25 25 H 1.08998 * 109.47626 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46974 * 239.99543 * 2 1 3 27 27 H 1.09002 * 109.47052 * 119.99871 * 2 1 3 28 28 H 0.96994 * 120.00171 * 179.97438 * 8 7 5 29 29 H 1.08007 * 119.95039 * 180.02562 * 13 4 3 30 30 H 1.07999 * 119.78002 * 179.97438 * 14 13 4 31 31 H 1.08005 * 119.83731 * 179.72531 * 15 14 13 32 32 H 1.08995 * 109.47751 * 59.99704 * 21 19 17 33 33 H 1.09003 * 109.47258 * 180.02562 * 21 19 17 34 34 H 1.09000 * 109.47052 * 299.99331 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3882 2.0448 1.2070 5 6 2.2764 1.3429 2.4299 6 1 1.4766 0.6312 2.5729 7 6 3.2020 1.5706 3.4545 8 7 4.1362 2.4738 3.3032 9 14 3.1035 0.5849 5.0382 10 1 1.9659 -0.3663 4.9593 11 1 4.3674 -0.1707 5.2303 12 1 2.8993 1.5076 6.1837 13 6 2.8556 3.3726 1.1936 14 6 2.9635 4.0552 0.0015 15 6 2.6099 3.4469 -1.1885 16 6 2.1465 2.1240 -1.1970 17 6 1.7767 1.4803 -2.4683 18 8 1.2623 0.3823 -2.4648 19 6 2.0372 2.1862 -3.7740 20 1 1.9317 1.4791 -4.5967 21 6 1.0304 3.3250 -3.9479 22 17 3.7102 2.8585 -3.7703 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.7775 2.6319 4.0135 29 1 3.1308 3.8567 2.1191 30 1 3.3223 5.0739 -0.0027 31 1 2.6942 3.9926 -2.1168 32 1 1.1358 4.0322 -3.1253 33 1 1.2186 3.8352 -4.8926 34 1 0.0190 2.9185 -3.9503 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396049383.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:37 Heat of formation + Delta-G solvation = -50.108617 kcal Electronic energy + Delta-G solvation = -18271.648438 eV Core-core repulsion = 15387.240772 eV Total energy + Delta-G solvation = -2884.407666 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.12691 -38.89754 -37.24741 -35.47838 -34.71552 -33.51090 -31.39854 -30.23515 -27.20058 -26.16311 -24.33670 -23.44329 -21.55333 -20.59224 -18.81942 -17.53441 -17.15093 -16.67007 -16.20154 -15.96008 -15.50511 -15.33091 -14.57647 -14.42530 -14.06016 -13.94588 -13.57710 -13.37324 -13.08918 -12.95188 -12.86815 -12.70650 -12.46620 -12.43903 -12.13519 -11.98288 -11.87861 -11.54621 -11.31718 -11.18306 -10.84533 -10.15900 -9.30061 -9.13874 -8.49096 -6.34330 0.01840 0.97594 1.03460 1.38674 1.45145 1.52503 1.88051 2.23666 2.82760 2.92681 3.62875 3.77467 3.85306 4.27669 4.29701 4.43215 4.60563 4.70228 4.72588 4.77208 4.80462 5.03374 5.09260 5.17365 5.17934 5.27548 5.30687 5.44912 5.46877 5.64275 5.92685 6.05982 6.13176 6.33613 6.54656 6.68494 6.99141 7.01454 8.44777 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026408 B = 0.006546 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.035298 B = 4276.668154 C = 4923.907999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.069 4.069 3 C -0.121 4.121 4 C 0.058 3.942 5 C -0.487 4.487 6 H 0.073 0.927 7 C 0.029 3.971 8 N -0.846 5.846 9 Si 0.978 3.022 10 H -0.260 1.260 11 H -0.271 1.271 12 H -0.266 1.266 13 C -0.141 4.141 14 C -0.138 4.138 15 C -0.153 4.153 16 C -0.170 4.170 17 C 0.396 3.604 18 O -0.463 6.463 19 C -0.038 4.038 20 H 0.140 0.860 21 C -0.154 4.154 22 Cl -0.159 7.159 23 H 0.037 0.963 24 H 0.047 0.953 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.049 0.951 28 H 0.282 0.718 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.142 0.858 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.703 1.645 -10.077 10.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.106 4.106 3 C -0.123 4.123 4 C 0.056 3.944 5 C -0.518 4.518 6 H 0.091 0.909 7 C -0.182 4.182 8 N -0.474 5.474 9 Si 0.800 3.200 10 H -0.184 1.184 11 H -0.196 1.196 12 H -0.191 1.191 13 C -0.161 4.161 14 C -0.156 4.156 15 C -0.172 4.172 16 C -0.171 4.171 17 C 0.277 3.723 18 O -0.341 6.341 19 C -0.083 4.083 20 H 0.158 0.842 21 C -0.211 4.211 22 Cl -0.133 7.133 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.130 0.870 30 H 0.136 0.864 31 H 0.159 0.841 32 H 0.092 0.908 33 H 0.123 0.877 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.660 1.222 -9.956 10.678 hybrid contribution 0.550 -0.198 1.070 1.219 sum -3.110 1.023 -8.886 9.470 Atomic orbital electron populations 1.21446 0.94735 1.01038 1.00260 1.20392 0.96371 0.93086 1.00777 1.20534 1.03694 0.96047 0.92014 1.17788 0.92160 0.91867 0.92543 1.19668 1.12168 1.21793 0.98195 0.90858 1.26612 0.93725 0.95493 1.02390 1.69799 1.14018 1.29326 1.34306 0.85199 0.79039 0.78676 0.77074 1.18385 1.19638 1.19087 1.21803 1.02110 0.94419 0.97718 1.21040 1.01866 0.99716 0.92961 1.21425 1.03368 0.94181 0.98219 1.19889 1.07777 0.96364 0.93047 1.22737 0.74058 0.85082 0.90468 1.90457 1.34222 1.19891 1.89567 1.24720 0.84887 1.00279 0.98374 0.84240 1.22192 0.97318 0.96219 1.05334 1.98735 1.28385 1.87314 1.98849 0.94370 0.93398 0.92020 0.91351 0.93192 0.90729 0.87027 0.86381 0.84065 0.90803 0.87725 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.56 9.46 71.98 0.68 -3.88 16 2 C -0.07 -3.06 4.87 29.84 0.15 -2.92 16 3 C -0.12 -5.81 5.24 -19.07 -0.10 -5.91 16 4 C 0.06 3.07 5.54 -21.33 -0.12 2.95 16 5 C -0.49 -25.96 7.88 23.47 0.19 -25.77 16 6 H 0.07 3.83 7.09 -2.91 -0.02 3.81 16 7 C 0.03 1.47 5.41 85.25 0.46 1.93 16 8 N -0.85 -44.42 10.62 21.82 0.23 -44.18 16 9 Si 0.98 39.30 29.56 68.60 2.03 41.33 16 10 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 11 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 12 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 13 C -0.14 -7.16 8.66 22.78 0.20 -6.96 16 14 C -0.14 -5.97 10.00 22.17 0.22 -5.75 16 15 C -0.15 -6.00 7.69 22.74 0.17 -5.83 16 16 C -0.17 -7.10 5.69 -20.19 -0.11 -7.22 16 17 C 0.40 13.96 6.08 28.05 0.17 14.13 16 18 O -0.46 -17.77 12.46 -2.94 -0.04 -17.81 16 19 C -0.04 -0.98 3.49 29.85 0.10 -0.87 16 20 H 0.14 2.94 8.13 -2.39 -0.02 2.92 16 21 C -0.15 -3.04 9.10 71.98 0.65 -2.38 16 22 Cl -0.16 -4.43 25.25 -2.72 -0.07 -4.50 16 23 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.05 1.82 6.81 -2.39 -0.02 1.81 16 25 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.07 3.00 5.82 -2.39 -0.01 2.98 16 27 H 0.05 2.31 6.62 -2.39 -0.02 2.30 16 28 H 0.28 13.56 8.30 -92.71 -0.77 12.79 16 29 H 0.11 6.03 6.15 -2.91 -0.02 6.01 16 30 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 31 H 0.14 4.60 4.09 -2.91 -0.01 4.59 16 32 H 0.07 1.64 5.96 -2.39 -0.01 1.63 16 33 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -58.74 287.93 5.94 -52.80 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 1.12 Total: 20.84 kcal Atomic # 6 Polarization: -51.15 SS G_CDS: 2.66 Total: -48.48 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.23 Total: -44.18 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.04 Total: -17.81 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Atomic # 17 Polarization: -4.43 SS G_CDS: -0.07 Total: -4.50 kcal Total: -58.74 5.94 -52.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396049383.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.695 kcal (2) G-P(sol) polarization free energy of solvation -58.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds