Wall clock time and date at job start Mon Mar 30 2020 07:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.47589 * 2 1 4 4 C 1.36229 * 120.03917 * 265.00133 * 3 2 1 5 5 C 1.40297 * 120.07897 * 180.02562 * 4 3 2 6 6 C 1.46864 * 119.92076 * 180.02562 * 5 4 3 7 7 O 1.21307 * 120.00151 * 359.97438 * 6 5 4 8 8 C 1.50708 * 119.99830 * 179.97438 * 6 5 4 9 9 H 1.08998 * 109.46684 * 35.00292 * 8 6 5 10 10 C 1.53001 * 109.47088 * 275.00251 * 8 6 5 11 11 Cl 1.80301 * 109.46996 * 155.00248 * 8 6 5 12 12 C 1.40336 * 120.15384 * 0.02562 * 5 4 3 13 13 C 1.36183 * 120.08122 * 359.97438 * 12 5 4 14 14 C 1.40946 * 120.04165 * 85.01723 * 3 2 1 15 15 C 1.40989 * 120.07320 * 359.96463 * 14 3 2 16 16 H 1.07998 * 120.00660 * 333.82895 * 15 14 3 17 17 C 1.40336 * 120.00062 * 153.83286 * 15 14 3 18 18 N 1.30583 * 119.99778 * 343.74404 * 17 15 14 19 19 Si 1.86793 * 120.00275 * 163.74026 * 17 15 14 20 20 H 1.48496 * 109.47087 * 59.99944 * 19 17 15 21 21 H 1.48500 * 109.47350 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47240 * 300.00270 * 19 17 15 23 23 H 1.09001 * 109.47477 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47038 * 300.00338 * 1 2 3 25 25 H 1.09003 * 109.47547 * 59.99872 * 1 2 3 26 26 H 1.09003 * 109.47038 * 239.99662 * 2 1 3 27 27 H 1.09001 * 109.46810 * 120.00130 * 2 1 3 28 28 H 1.08003 * 119.96144 * 0.04367 * 4 3 2 29 29 H 1.09002 * 109.47287 * 59.99824 * 10 8 6 30 30 H 1.08996 * 109.47321 * 180.02562 * 10 8 6 31 31 H 1.09005 * 109.47090 * 300.00214 * 10 8 6 32 32 H 1.07996 * 119.95814 * 179.71868 * 12 5 4 33 33 H 1.08001 * 120.04083 * 179.97438 * 13 12 5 34 34 H 0.97001 * 120.00410 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3566 2.0294 -1.1748 5 6 2.8250 3.3519 -1.1757 6 6 3.1730 4.0049 -2.4444 7 8 3.0558 3.4007 -3.4897 8 6 3.6757 5.4257 -2.4474 9 1 4.2823 5.5983 -1.5585 10 6 2.4860 6.3876 -2.4477 11 17 4.6757 5.7061 -3.9213 12 6 2.9617 4.0522 0.0327 13 6 2.6394 3.4499 1.2108 14 6 2.1677 2.1213 1.2155 15 6 1.8327 1.4947 2.4332 16 1 1.1084 0.6937 2.4471 17 6 2.4404 1.9118 3.6275 18 7 3.5245 2.6387 3.5892 19 14 1.6984 1.4272 5.2718 20 1 1.6666 -0.0532 5.3835 21 1 2.5232 1.9885 6.3718 22 1 0.3158 1.9606 5.3675 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 2.2527 1.4934 -2.1067 29 1 1.8814 6.2181 -1.5568 30 1 2.8495 7.4152 -2.4504 31 1 1.8793 6.2149 -3.3367 32 1 3.3268 5.0685 0.0287 33 1 2.7452 3.9893 2.1405 34 1 3.9444 2.9273 4.4146 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396049482.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:17 Heat of formation + Delta-G solvation = -66.532585 kcal Electronic energy + Delta-G solvation = -17697.593508 eV Core-core repulsion = 14812.473646 eV Total energy + Delta-G solvation = -2885.119862 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.67740 -39.17562 -36.96178 -35.71514 -34.94282 -33.37573 -31.60395 -30.07497 -28.02483 -25.64885 -24.25032 -23.22765 -21.86919 -20.04194 -19.15382 -17.77572 -17.20966 -16.62277 -15.83070 -15.72216 -15.54645 -15.34439 -14.58246 -14.40032 -14.04549 -13.87945 -13.64108 -13.40355 -13.30325 -13.12869 -12.82825 -12.69898 -12.48642 -12.32477 -12.12720 -11.89752 -11.81722 -11.51958 -11.46921 -11.20106 -11.05152 -10.31103 -9.42016 -9.32569 -8.79345 -6.45789 0.16373 1.07386 1.18625 1.38016 1.42558 1.52133 1.85496 2.15789 2.71581 3.11774 3.63354 3.90346 3.96478 4.28795 4.32615 4.47738 4.51005 4.64002 4.69584 4.75402 4.81367 4.99554 5.03879 5.10306 5.12486 5.17778 5.26654 5.46564 5.49847 5.68422 5.92345 5.96637 6.06621 6.26527 6.55771 6.78292 6.82045 6.91947 8.13483 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.024970 B = 0.005357 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.067339 B = 5225.987434 C = 6017.497845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.060 4.060 3 C -0.215 4.215 4 C -0.033 4.033 5 C -0.321 4.321 6 C 0.396 3.604 7 O -0.513 6.513 8 C -0.041 4.041 9 H 0.136 0.864 10 C -0.143 4.143 11 Cl -0.176 7.176 12 C -0.050 4.050 13 C -0.201 4.201 14 C 0.111 3.889 15 C -0.450 4.450 16 H 0.094 0.906 17 C 0.038 3.962 18 N -0.792 5.792 19 Si 0.981 3.019 20 H -0.258 1.258 21 H -0.267 1.267 22 H -0.257 1.257 23 H 0.068 0.932 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.126 0.874 33 H 0.113 0.887 34 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.221 3.899 -0.051 4.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.097 4.097 3 C -0.216 4.216 4 C -0.051 4.051 5 C -0.324 4.324 6 C 0.282 3.718 7 O -0.396 6.396 8 C -0.085 4.085 9 H 0.154 0.846 10 C -0.200 4.200 11 Cl -0.149 7.149 12 C -0.068 4.068 13 C -0.220 4.220 14 C 0.108 3.892 15 C -0.476 4.476 16 H 0.112 0.888 17 C -0.182 4.182 18 N -0.415 5.415 19 Si 0.801 3.199 20 H -0.182 1.182 21 H -0.191 1.191 22 H -0.181 1.181 23 H 0.087 0.913 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.106 0.894 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.143 0.857 33 H 0.130 0.870 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.004 3.738 -0.550 4.277 hybrid contribution 0.158 -0.146 0.574 0.613 sum -1.846 3.592 0.024 4.039 Atomic orbital electron populations 1.21661 0.94938 1.01476 1.01120 1.20167 0.96164 0.92566 1.00851 1.19740 1.11664 0.97421 0.92802 1.20511 0.94538 0.93674 0.96423 1.19505 1.22079 0.97588 0.93211 1.22316 0.73465 0.87847 0.88216 1.90442 1.47119 1.66581 1.35435 1.24679 0.97112 0.96610 0.90089 0.84646 1.22006 0.95102 0.98912 1.03989 1.98702 1.73656 1.96667 1.45923 1.20848 0.96141 0.98417 0.91434 1.21041 1.08305 0.95545 0.97134 1.18023 0.87088 0.91484 0.92598 1.20184 1.20008 1.15953 0.91482 0.88781 1.26941 0.93450 0.92746 1.05049 1.69729 1.13850 1.25141 1.32784 0.85232 0.79457 0.79955 0.75210 1.18183 1.19132 1.18132 0.91290 0.93401 0.93704 0.92634 0.92191 0.88588 0.89428 0.88098 0.91854 0.85659 0.86962 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 9.78 71.98 0.70 -3.81 16 2 C -0.06 -2.33 5.39 29.85 0.16 -2.17 16 3 C -0.22 -9.77 5.15 -19.67 -0.10 -9.87 16 4 C -0.03 -1.50 9.14 22.30 0.20 -1.29 16 5 C -0.32 -13.84 5.89 -20.01 -0.12 -13.96 16 6 C 0.40 15.73 6.26 27.95 0.18 15.90 16 7 O -0.51 -23.26 16.24 -3.11 -0.05 -23.31 16 8 C -0.04 -1.24 3.03 29.85 0.09 -1.15 16 9 H 0.14 3.68 6.71 -2.39 -0.02 3.67 16 10 C -0.14 -3.50 9.30 71.98 0.67 -2.83 16 11 Cl -0.18 -5.54 28.00 -2.72 -0.08 -5.62 16 12 C -0.05 -2.05 9.27 22.30 0.21 -1.85 16 13 C -0.20 -9.34 8.62 22.46 0.19 -9.15 16 14 C 0.11 5.35 5.56 -21.27 -0.12 5.24 16 15 C -0.45 -20.80 8.09 23.46 0.19 -20.61 16 16 H 0.09 4.13 6.06 -2.91 -0.02 4.11 16 17 C 0.04 1.66 5.16 85.39 0.44 2.10 16 18 N -0.79 -35.84 10.95 21.89 0.24 -35.60 16 19 Si 0.98 32.67 29.59 68.60 2.03 34.70 16 20 H -0.26 -8.40 7.11 99.48 0.71 -7.69 16 21 H -0.27 -8.48 7.11 99.48 0.71 -7.77 16 22 H -0.26 -8.42 7.11 99.48 0.71 -7.72 16 23 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.05 1.68 7.27 -2.39 -0.02 1.66 16 25 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 2.01 8.04 -2.39 -0.02 1.99 16 27 H 0.06 2.37 7.05 -2.39 -0.02 2.35 16 28 H 0.10 4.33 7.62 -2.91 -0.02 4.31 16 29 H 0.09 2.10 8.12 -2.39 -0.02 2.08 16 30 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.13 4.21 6.43 -2.91 -0.02 4.19 16 33 H 0.11 5.32 6.20 -2.91 -0.02 5.30 16 34 H 0.30 12.06 8.29 -92.71 -0.77 11.29 16 Total: -1.00 -54.61 301.12 5.95 -48.67 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 1.11 Total: 24.61 kcal Atomic # 6 Polarization: -46.15 SS G_CDS: 2.70 Total: -43.45 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.24 Total: -35.60 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.05 Total: -23.31 kcal Atomic # 14 Polarization: 32.67 SS G_CDS: 2.03 Total: 34.70 kcal Atomic # 17 Polarization: -5.54 SS G_CDS: -0.08 Total: -5.62 kcal Total: -54.61 5.95 -48.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396049482.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.867 kcal (2) G-P(sol) polarization free energy of solvation -54.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds