Wall clock time and date at job start Mon Mar 30 2020 07:16:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.50700 * 109.46864 * 2 1
4 4 C 1.37635 * 119.88084 * 89.99917 * 3 2 1
5 5 C 1.40690 * 119.74689 * 180.02562 * 4 3 2
6 6 C 1.41400 * 120.24390 * 180.02562 * 5 4 3
7 7 H 1.08008 * 120.00005 * 204.37869 * 6 5 4
8 8 C 1.39937 * 120.00139 * 24.37670 * 6 5 4
9 9 N 1.30822 * 120.00180 * 17.87080 * 8 6 5
10 10 Si 1.86803 * 120.00051 * 197.87111 * 8 6 5
11 11 H 1.48498 * 109.47351 * 59.99764 * 10 8 6
12 12 H 1.48502 * 109.46895 * 180.02562 * 10 8 6
13 13 H 1.48496 * 109.47150 * 299.99704 * 10 8 6
14 14 C 1.40732 * 119.51390 * 359.97438 * 5 4 3
15 15 C 1.37596 * 119.74247 * 0.02562 * 14 5 4
16 16 C 1.50707 * 119.87431 * 179.97438 * 15 14 5
17 17 H 1.09004 * 109.46838 * 184.99556 * 16 15 14
18 18 Cl 1.80299 * 109.47084 * 304.99483 * 16 15 14
19 19 C 1.50699 * 109.47228 * 64.99556 * 16 15 14
20 20 C 1.50696 * 119.99829 * 274.99926 * 19 16 15
21 21 O 1.20758 * 119.99736 * 95.00101 * 19 16 15
22 22 C 1.38620 * 119.87252 * 270.28811 * 3 2 1
23 23 H 1.09003 * 109.47311 * 300.00372 * 1 2 3
24 24 H 1.09001 * 109.47241 * 60.00476 * 1 2 3
25 25 H 1.08998 * 109.46960 * 180.02562 * 1 2 3
26 26 H 1.08989 * 109.47254 * 239.99447 * 2 1 3
27 27 H 1.09000 * 109.46501 * 119.99582 * 2 1 3
28 28 H 1.08005 * 120.12516 * 0.03809 * 4 3 2
29 29 H 0.96997 * 120.00342 * 180.02562 * 9 8 6
30 30 H 1.08005 * 120.13143 * 179.97438 * 14 5 4
31 31 H 1.09004 * 109.47407 * 90.00365 * 20 19 16
32 32 H 1.08994 * 109.47425 * 330.00037 * 20 19 16
33 33 H 1.09001 * 109.47108 * 209.99786 * 20 19 16
34 34 H 1.08001 * 119.74830 * 359.97438 * 22 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.2608 2.0673 1.1934
5 6 2.7292 3.3940 1.1901
6 6 2.9680 4.0680 2.4100
7 1 2.9396 5.1471 2.4453
8 6 3.2411 3.3369 3.5715
9 7 3.6198 2.0877 3.4843
10 14 3.0650 4.1447 5.2466
11 1 1.6641 4.6012 5.4312
12 1 3.4107 3.1647 6.3075
13 1 3.9809 5.3103 5.3328
14 6 2.9593 4.0449 -0.0362
15 6 2.7240 3.3791 -1.2172
16 6 2.9689 4.0736 -2.5321
17 1 2.6460 3.4285 -3.3493
18 17 2.0367 5.6161 -2.5798
19 6 4.4392 4.3704 -2.6773
20 6 5.0181 5.6235 -2.0726
21 8 5.1534 3.6041 -3.2781
22 6 2.2567 2.0738 -1.2020
23 1 -0.3634 0.5139 0.8900
24 1 -0.3634 0.5138 -0.8900
25 1 -0.3633 -1.0277 0.0005
26 1 1.8933 -0.5139 -0.8898
27 1 1.8932 -0.5138 0.8901
28 1 2.0814 1.5581 2.1288
29 1 3.8088 1.5808 4.2894
30 1 3.3185 5.0634 -0.0504
31 1 5.3466 5.4172 -1.0539
32 1 4.2581 6.4046 -2.0582
33 1 5.8686 5.9550 -2.6684
34 1 2.0706 1.5603 -2.1337
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000396050154.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:16:53
Heat of formation + Delta-G solvation = -64.174136 kcal
Electronic energy + Delta-G solvation = -17783.525406 eV
Core-core repulsion = 14898.507813 eV
Total energy + Delta-G solvation = -2885.017592 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 266.081 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-40.86555 -39.58558 -37.16181 -35.87300 -34.96898 -32.76710 -31.30892 -30.05318
-27.93774 -27.13008 -24.46660 -22.64817 -21.56502 -20.32936 -18.85953 -17.30644
-17.07030 -16.86667 -16.47820 -16.28211 -15.71872 -15.31048 -14.61491 -14.48160
-14.27615 -14.07237 -13.55698 -13.32894 -13.25136 -13.18512 -12.80868 -12.72641
-12.46767 -12.38253 -12.22375 -12.02488 -11.88091 -11.73787 -11.28924 -11.19569
-10.99284 -10.68805 -9.31076 -9.13140 -8.62093 -6.33148 0.32713 0.96973
0.97830 1.36073 1.40023 1.49522 1.55519 2.21214 2.66415 2.96005
3.64314 3.69806 3.78250 4.19009 4.21189 4.30948 4.56434 4.57759
4.63114 4.66049 4.83968 4.97462 5.05119 5.05863 5.12717 5.15515
5.30682 5.41620 5.51152 5.67174 5.92856 6.08594 6.17605 6.21500
6.34117 6.68742 6.94733 7.02370 8.33856
Molecular weight = 266.08amu
Principal moments of inertia in cm(-1)
A = 0.015197 B = 0.007306 C = 0.005758
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1841.968120 B = 3831.314372 C = 4861.788035
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.077 4.077
3 C -0.075 4.075
4 C -0.172 4.172
5 C 0.079 3.921
6 C -0.495 4.495
7 H 0.078 0.922
8 C 0.038 3.962
9 N -0.823 5.823
10 Si 0.975 3.025
11 H -0.262 1.262
12 H -0.270 1.270
13 H -0.259 1.259
14 C -0.207 4.207
15 C -0.079 4.079
16 C 0.006 3.994
17 H 0.131 0.869
18 Cl -0.147 7.147
19 C 0.375 3.625
20 C -0.206 4.206
21 O -0.480 6.480
22 C -0.218 4.218
23 H 0.039 0.961
24 H 0.055 0.945
25 H 0.074 0.926
26 H 0.074 0.926
27 H 0.055 0.945
28 H 0.102 0.898
29 H 0.287 0.713
30 H 0.109 0.891
31 H 0.101 0.899
32 H 0.106 0.894
33 H 0.106 0.894
34 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.391 2.613 -5.769 6.770
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.114 4.114
3 C -0.075 4.075
4 C -0.192 4.192
5 C 0.077 3.923
6 C -0.525 4.525
7 H 0.096 0.904
8 C -0.177 4.177
9 N -0.449 5.449
10 Si 0.796 3.204
11 H -0.186 1.186
12 H -0.195 1.195
13 H -0.183 1.183
14 C -0.226 4.226
15 C -0.079 4.079
16 C -0.038 4.038
17 H 0.149 0.851
18 Cl -0.120 7.120
19 C 0.253 3.747
20 C -0.262 4.262
21 O -0.356 6.356
22 C -0.237 4.237
23 H 0.059 0.941
24 H 0.075 0.925
25 H 0.093 0.907
26 H 0.092 0.908
27 H 0.074 0.926
28 H 0.120 0.880
29 H 0.098 0.902
30 H 0.127 0.873
31 H 0.119 0.881
32 H 0.125 0.875
33 H 0.125 0.875
34 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges -1.998 2.130 -5.960 6.637
hybrid contribution -0.048 0.269 0.951 0.990
sum -2.046 2.400 -5.009 5.919
Atomic orbital electron populations
1.21645 0.93976 1.02029 1.01441 1.20457 0.96862 0.92312 1.01769
1.19813 0.98617 0.96217 0.92883 1.21256 1.04745 0.96715 0.96470
1.17913 0.88857 0.92576 0.93003 1.19766 1.44415 0.94883 0.93411
0.90399 1.26669 0.91253 0.95094 1.04671 1.69864 1.31767 1.10663
1.32633 0.85350 0.79911 0.79013 0.76086 1.18641 1.19495 1.18315
1.20958 1.09907 1.00329 0.91448 1.18948 1.02835 0.94777 0.91373
1.23517 0.92360 0.88064 0.99889 0.85111 1.98701 1.76380 1.37893
1.99058 1.24862 0.89004 0.86873 0.74004 1.22388 1.04123 0.96183
1.03541 1.90401 1.61929 1.48461 1.34770 1.20404 1.11432 0.94981
0.96882 0.94143 0.92549 0.90703 0.90773 0.92613 0.88042 0.90242
0.87308 0.88072 0.87549 0.87526 0.86839
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.04 9.89 71.98 0.71 -3.33 16
2 C -0.08 -2.72 6.05 29.85 0.18 -2.54 16
3 C -0.08 -3.29 5.13 -19.92 -0.10 -3.39 16
4 C -0.17 -8.70 8.34 22.73 0.19 -8.51 16
5 C 0.08 4.06 5.58 -21.29 -0.12 3.94 16
6 C -0.50 -25.64 9.05 23.46 0.21 -25.43 16
7 H 0.08 3.87 7.91 -2.91 -0.02 3.84 16
8 C 0.04 1.87 5.14 85.26 0.44 2.31 16
9 N -0.82 -42.05 10.95 21.82 0.24 -41.81 16
10 Si 0.98 37.31 29.60 68.60 2.03 39.34 16
11 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16
12 H -0.27 -9.88 7.11 99.48 0.71 -9.18 16
13 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16
14 C -0.21 -9.37 8.56 22.73 0.19 -9.18 16
15 C -0.08 -3.21 4.84 -19.91 -0.10 -3.31 16
16 C 0.01 0.20 3.36 29.10 0.10 0.30 16
17 H 0.13 3.95 7.87 -2.38 -0.02 3.94 16
18 Cl -0.15 -4.37 26.23 -2.72 -0.07 -4.45 16
19 C 0.38 12.37 6.19 29.10 0.18 12.55 16
20 C -0.21 -5.48 9.20 71.23 0.66 -4.83 16
21 O -0.48 -18.28 17.84 -1.44 -0.03 -18.30 16
22 C -0.22 -9.00 9.33 22.46 0.21 -8.79 16
23 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16
24 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16
25 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16
26 H 0.07 2.35 8.09 -2.39 -0.02 2.33 16
27 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16
28 H 0.10 5.42 6.16 -2.91 -0.02 5.41 16
29 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16
30 H 0.11 4.59 6.96 -2.91 -0.02 4.57 16
31 H 0.10 2.88 7.88 -2.38 -0.02 2.86 16
32 H 0.11 2.56 6.30 -2.39 -0.02 2.54 16
33 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16
34 H 0.11 4.11 7.94 -2.91 -0.02 4.09 16
Total: -1.00 -57.41 304.65 6.02 -51.39
By element:
Atomic # 1 Polarization: 22.94 SS G_CDS: 1.10 Total: 24.04 kcal
Atomic # 6 Polarization: -52.96 SS G_CDS: 2.75 Total: -50.21 kcal
Atomic # 7 Polarization: -42.05 SS G_CDS: 0.24 Total: -41.81 kcal
Atomic # 8 Polarization: -18.28 SS G_CDS: -0.03 Total: -18.30 kcal
Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.34 kcal
Atomic # 17 Polarization: -4.37 SS G_CDS: -0.07 Total: -4.45 kcal
Total: -57.41 6.02 -51.39 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000396050154.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.789 kcal
(2) G-P(sol) polarization free energy of solvation -57.409 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.198 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.024 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.385 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.174 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds