Wall clock time and date at job start Mon Mar 30 2020 07:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.46864 * 2 1 4 4 C 1.37635 * 119.88084 * 89.99917 * 3 2 1 5 5 C 1.40690 * 119.74689 * 180.02562 * 4 3 2 6 6 C 1.41400 * 120.24390 * 180.02562 * 5 4 3 7 7 H 1.08008 * 120.00005 * 204.37869 * 6 5 4 8 8 C 1.39937 * 120.00139 * 24.37670 * 6 5 4 9 9 N 1.30822 * 120.00180 * 17.87080 * 8 6 5 10 10 Si 1.86803 * 120.00051 * 197.87111 * 8 6 5 11 11 H 1.48498 * 109.47351 * 59.99764 * 10 8 6 12 12 H 1.48502 * 109.46895 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47150 * 299.99704 * 10 8 6 14 14 C 1.40732 * 119.51390 * 359.97438 * 5 4 3 15 15 C 1.37596 * 119.74247 * 0.02562 * 14 5 4 16 16 C 1.50707 * 119.87431 * 179.97438 * 15 14 5 17 17 H 1.09004 * 109.46838 * 184.99556 * 16 15 14 18 18 Cl 1.80299 * 109.47084 * 304.99483 * 16 15 14 19 19 C 1.50699 * 109.47228 * 64.99556 * 16 15 14 20 20 C 1.50696 * 119.99829 * 274.99926 * 19 16 15 21 21 O 1.20758 * 119.99736 * 95.00101 * 19 16 15 22 22 C 1.38620 * 119.87252 * 270.28811 * 3 2 1 23 23 H 1.09003 * 109.47311 * 300.00372 * 1 2 3 24 24 H 1.09001 * 109.47241 * 60.00476 * 1 2 3 25 25 H 1.08998 * 109.46960 * 180.02562 * 1 2 3 26 26 H 1.08989 * 109.47254 * 239.99447 * 2 1 3 27 27 H 1.09000 * 109.46501 * 119.99582 * 2 1 3 28 28 H 1.08005 * 120.12516 * 0.03809 * 4 3 2 29 29 H 0.96997 * 120.00342 * 180.02562 * 9 8 6 30 30 H 1.08005 * 120.13143 * 179.97438 * 14 5 4 31 31 H 1.09004 * 109.47407 * 90.00365 * 20 19 16 32 32 H 1.08994 * 109.47425 * 330.00037 * 20 19 16 33 33 H 1.09001 * 109.47108 * 209.99786 * 20 19 16 34 34 H 1.08001 * 119.74830 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2608 2.0673 1.1934 5 6 2.7292 3.3940 1.1901 6 6 2.9680 4.0680 2.4100 7 1 2.9396 5.1471 2.4453 8 6 3.2411 3.3369 3.5715 9 7 3.6198 2.0877 3.4843 10 14 3.0650 4.1447 5.2466 11 1 1.6641 4.6012 5.4312 12 1 3.4107 3.1647 6.3075 13 1 3.9809 5.3103 5.3328 14 6 2.9593 4.0449 -0.0362 15 6 2.7240 3.3791 -1.2172 16 6 2.9689 4.0736 -2.5321 17 1 2.6460 3.4285 -3.3493 18 17 2.0367 5.6161 -2.5798 19 6 4.4392 4.3704 -2.6773 20 6 5.0181 5.6235 -2.0726 21 8 5.1534 3.6041 -3.2781 22 6 2.2567 2.0738 -1.2020 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8898 27 1 1.8932 -0.5138 0.8901 28 1 2.0814 1.5581 2.1288 29 1 3.8088 1.5808 4.2894 30 1 3.3185 5.0634 -0.0504 31 1 5.3466 5.4172 -1.0539 32 1 4.2581 6.4046 -2.0582 33 1 5.8686 5.9550 -2.6684 34 1 2.0706 1.5603 -2.1337 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396050154.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:53 Heat of formation + Delta-G solvation = -64.174136 kcal Electronic energy + Delta-G solvation = -17783.525406 eV Core-core repulsion = 14898.507813 eV Total energy + Delta-G solvation = -2885.017592 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.86555 -39.58558 -37.16181 -35.87300 -34.96898 -32.76710 -31.30892 -30.05318 -27.93774 -27.13008 -24.46660 -22.64817 -21.56502 -20.32936 -18.85953 -17.30644 -17.07030 -16.86667 -16.47820 -16.28211 -15.71872 -15.31048 -14.61491 -14.48160 -14.27615 -14.07237 -13.55698 -13.32894 -13.25136 -13.18512 -12.80868 -12.72641 -12.46767 -12.38253 -12.22375 -12.02488 -11.88091 -11.73787 -11.28924 -11.19569 -10.99284 -10.68805 -9.31076 -9.13140 -8.62093 -6.33148 0.32713 0.96973 0.97830 1.36073 1.40023 1.49522 1.55519 2.21214 2.66415 2.96005 3.64314 3.69806 3.78250 4.19009 4.21189 4.30948 4.56434 4.57759 4.63114 4.66049 4.83968 4.97462 5.05119 5.05863 5.12717 5.15515 5.30682 5.41620 5.51152 5.67174 5.92856 6.08594 6.17605 6.21500 6.34117 6.68742 6.94733 7.02370 8.33856 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.007306 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.968120 B = 3831.314372 C = 4861.788035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.077 4.077 3 C -0.075 4.075 4 C -0.172 4.172 5 C 0.079 3.921 6 C -0.495 4.495 7 H 0.078 0.922 8 C 0.038 3.962 9 N -0.823 5.823 10 Si 0.975 3.025 11 H -0.262 1.262 12 H -0.270 1.270 13 H -0.259 1.259 14 C -0.207 4.207 15 C -0.079 4.079 16 C 0.006 3.994 17 H 0.131 0.869 18 Cl -0.147 7.147 19 C 0.375 3.625 20 C -0.206 4.206 21 O -0.480 6.480 22 C -0.218 4.218 23 H 0.039 0.961 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.102 0.898 29 H 0.287 0.713 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.391 2.613 -5.769 6.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.114 4.114 3 C -0.075 4.075 4 C -0.192 4.192 5 C 0.077 3.923 6 C -0.525 4.525 7 H 0.096 0.904 8 C -0.177 4.177 9 N -0.449 5.449 10 Si 0.796 3.204 11 H -0.186 1.186 12 H -0.195 1.195 13 H -0.183 1.183 14 C -0.226 4.226 15 C -0.079 4.079 16 C -0.038 4.038 17 H 0.149 0.851 18 Cl -0.120 7.120 19 C 0.253 3.747 20 C -0.262 4.262 21 O -0.356 6.356 22 C -0.237 4.237 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.120 0.880 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.998 2.130 -5.960 6.637 hybrid contribution -0.048 0.269 0.951 0.990 sum -2.046 2.400 -5.009 5.919 Atomic orbital electron populations 1.21645 0.93976 1.02029 1.01441 1.20457 0.96862 0.92312 1.01769 1.19813 0.98617 0.96217 0.92883 1.21256 1.04745 0.96715 0.96470 1.17913 0.88857 0.92576 0.93003 1.19766 1.44415 0.94883 0.93411 0.90399 1.26669 0.91253 0.95094 1.04671 1.69864 1.31767 1.10663 1.32633 0.85350 0.79911 0.79013 0.76086 1.18641 1.19495 1.18315 1.20958 1.09907 1.00329 0.91448 1.18948 1.02835 0.94777 0.91373 1.23517 0.92360 0.88064 0.99889 0.85111 1.98701 1.76380 1.37893 1.99058 1.24862 0.89004 0.86873 0.74004 1.22388 1.04123 0.96183 1.03541 1.90401 1.61929 1.48461 1.34770 1.20404 1.11432 0.94981 0.96882 0.94143 0.92549 0.90703 0.90773 0.92613 0.88042 0.90242 0.87308 0.88072 0.87549 0.87526 0.86839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 9.89 71.98 0.71 -3.33 16 2 C -0.08 -2.72 6.05 29.85 0.18 -2.54 16 3 C -0.08 -3.29 5.13 -19.92 -0.10 -3.39 16 4 C -0.17 -8.70 8.34 22.73 0.19 -8.51 16 5 C 0.08 4.06 5.58 -21.29 -0.12 3.94 16 6 C -0.50 -25.64 9.05 23.46 0.21 -25.43 16 7 H 0.08 3.87 7.91 -2.91 -0.02 3.84 16 8 C 0.04 1.87 5.14 85.26 0.44 2.31 16 9 N -0.82 -42.05 10.95 21.82 0.24 -41.81 16 10 Si 0.98 37.31 29.60 68.60 2.03 39.34 16 11 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 12 H -0.27 -9.88 7.11 99.48 0.71 -9.18 16 13 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 14 C -0.21 -9.37 8.56 22.73 0.19 -9.18 16 15 C -0.08 -3.21 4.84 -19.91 -0.10 -3.31 16 16 C 0.01 0.20 3.36 29.10 0.10 0.30 16 17 H 0.13 3.95 7.87 -2.38 -0.02 3.94 16 18 Cl -0.15 -4.37 26.23 -2.72 -0.07 -4.45 16 19 C 0.38 12.37 6.19 29.10 0.18 12.55 16 20 C -0.21 -5.48 9.20 71.23 0.66 -4.83 16 21 O -0.48 -18.28 17.84 -1.44 -0.03 -18.30 16 22 C -0.22 -9.00 9.33 22.46 0.21 -8.79 16 23 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 26 H 0.07 2.35 8.09 -2.39 -0.02 2.33 16 27 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 28 H 0.10 5.42 6.16 -2.91 -0.02 5.41 16 29 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 30 H 0.11 4.59 6.96 -2.91 -0.02 4.57 16 31 H 0.10 2.88 7.88 -2.38 -0.02 2.86 16 32 H 0.11 2.56 6.30 -2.39 -0.02 2.54 16 33 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.11 4.11 7.94 -2.91 -0.02 4.09 16 Total: -1.00 -57.41 304.65 6.02 -51.39 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 1.10 Total: 24.04 kcal Atomic # 6 Polarization: -52.96 SS G_CDS: 2.75 Total: -50.21 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.24 Total: -41.81 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.03 Total: -18.30 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.34 kcal Atomic # 17 Polarization: -4.37 SS G_CDS: -0.07 Total: -4.45 kcal Total: -57.41 6.02 -51.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396050154.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.789 kcal (2) G-P(sol) polarization free energy of solvation -57.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds