Wall clock time and date at job start Mon Mar 30 2020 07:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47468 * 2 1 4 4 C 1.38059 * 119.98841 * 266.00690 * 3 2 1 5 5 C 1.38686 * 121.30217 * 180.02562 * 4 3 2 6 6 C 1.37544 * 121.22765 * 359.95967 * 5 4 3 7 7 C 1.40795 * 119.86177 * 359.72952 * 6 5 4 8 8 C 1.40728 * 120.61542 * 180.30659 * 7 6 5 9 9 H 1.08001 * 119.99779 * 206.15167 * 8 7 6 10 10 C 1.40392 * 120.00419 * 26.15211 * 8 7 6 11 11 N 1.30561 * 119.99651 * 15.02194 * 10 8 7 12 12 Si 1.86800 * 120.00006 * 195.02210 * 10 8 7 13 13 H 1.48500 * 109.46975 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.46707 * 120.00221 * 12 10 8 15 15 H 1.48501 * 109.46890 * 239.99759 * 12 10 8 16 16 C 1.39656 * 119.98984 * 85.97962 * 3 2 1 17 17 C 1.46609 * 120.58724 * 0.02562 * 16 3 2 18 18 O 1.21338 * 119.99645 * 275.67056 * 17 16 3 19 19 C 1.50694 * 119.99994 * 95.67401 * 17 16 3 20 20 H 1.08995 * 109.47499 * 152.82091 * 19 17 16 21 21 C 1.52996 * 109.47201 * 272.82385 * 19 17 16 22 22 Cl 1.80303 * 109.47338 * 32.82249 * 19 17 16 23 23 H 1.09006 * 109.47010 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47280 * 300.00026 * 1 2 3 25 25 H 1.08998 * 109.46865 * 60.00116 * 1 2 3 26 26 H 1.09002 * 109.47685 * 239.99639 * 2 1 3 27 27 H 1.09006 * 109.47165 * 120.00027 * 2 1 3 28 28 H 1.07992 * 119.35027 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.37943 * 179.97438 * 5 4 3 30 30 H 1.08003 * 120.06372 * 180.02562 * 6 5 4 31 31 H 0.96998 * 119.99924 * 179.97438 * 11 10 8 32 32 H 1.09006 * 109.47568 * 186.50010 * 21 19 17 33 33 H 1.09003 * 109.47487 * 66.49959 * 21 19 17 34 34 H 1.09002 * 109.47350 * 306.49702 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3410 2.0436 -1.1929 5 6 2.8058 3.3498 -1.2245 6 6 2.9761 4.0744 -0.0679 7 6 2.6705 3.4907 1.1764 8 6 2.8326 4.2196 2.3692 9 1 3.0135 3.7006 3.2989 10 6 2.7593 5.6215 2.3507 11 7 2.2583 6.2353 1.3130 12 14 3.3787 6.6085 3.8107 13 1 3.8947 5.6828 4.8509 14 1 4.4690 7.5147 3.3688 15 1 2.2641 7.4127 4.3731 16 6 2.1852 2.1072 1.2066 17 6 1.8612 1.4578 2.4805 18 8 0.7167 1.4501 2.8836 19 6 2.9494 0.8001 3.2892 20 1 2.6742 0.8087 4.3437 21 6 3.1300 -0.6452 2.8210 22 17 4.4943 1.7022 3.0640 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.2187 1.5027 -2.1195 29 1 3.0381 3.8066 -2.1752 30 1 3.3389 5.0906 -0.1145 31 1 2.2072 7.2039 1.3003 32 1 3.8334 -1.1553 3.4793 33 1 3.5164 -0.6515 1.8018 34 1 2.1690 -1.1588 2.8484 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396051355.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:42 Heat of formation + Delta-G solvation = -58.378631 kcal Electronic energy + Delta-G solvation = -18542.730775 eV Core-core repulsion = 15657.964494 eV Total energy + Delta-G solvation = -2884.766281 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.80611 -38.66155 -36.94732 -36.10778 -34.28637 -33.35939 -31.68973 -30.02232 -27.43932 -26.06747 -24.25826 -23.37210 -21.81546 -20.09399 -18.78864 -17.64853 -17.12876 -16.99805 -16.18342 -15.88397 -15.37250 -15.00135 -14.62125 -14.50996 -14.26018 -13.82570 -13.61392 -13.37919 -13.24671 -13.11449 -12.91009 -12.68543 -12.45274 -12.35587 -12.05361 -11.98818 -11.62380 -11.41750 -11.29171 -11.17793 -11.01024 -10.34007 -9.20730 -9.12480 -8.68467 -6.34332 0.73884 0.86941 1.09303 1.34655 1.47690 1.48767 1.51523 2.16410 2.70891 3.10479 3.64699 3.83715 3.84507 4.12133 4.21250 4.51609 4.57577 4.61610 4.71641 4.75533 4.84859 4.94880 4.97756 5.02995 5.12410 5.15255 5.34259 5.40643 5.46303 5.67966 6.01699 6.10134 6.23510 6.32932 6.48990 6.68864 6.87016 7.02962 8.26168 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.017899 B = 0.009540 C = 0.007570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.989116 B = 2934.193814 C = 3697.912939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 C -0.023 4.023 4 C -0.249 4.249 5 C -0.092 4.092 6 C -0.204 4.204 7 C 0.136 3.864 8 C -0.471 4.471 9 H 0.084 0.916 10 C 0.036 3.964 11 N -0.813 5.813 12 Si 0.967 3.033 13 H -0.255 1.255 14 H -0.260 1.260 15 H -0.267 1.267 16 C -0.295 4.295 17 C 0.447 3.553 18 O -0.487 6.487 19 C -0.054 4.054 20 H 0.128 0.872 21 C -0.146 4.146 22 Cl -0.152 7.152 23 H 0.079 0.921 24 H 0.034 0.966 25 H 0.050 0.950 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.290 0.710 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.753 -9.544 1.719 10.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 C -0.023 4.023 4 C -0.268 4.268 5 C -0.110 4.110 6 C -0.223 4.223 7 C 0.133 3.867 8 C -0.500 4.500 9 H 0.102 0.898 10 C -0.180 4.180 11 N -0.437 5.437 12 Si 0.788 3.212 13 H -0.178 1.178 14 H -0.185 1.185 15 H -0.192 1.192 16 C -0.297 4.297 17 C 0.325 3.675 18 O -0.363 6.363 19 C -0.099 4.099 20 H 0.146 0.854 21 C -0.203 4.203 22 Cl -0.126 7.126 23 H 0.098 0.902 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.134 0.866 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.198 -9.249 1.820 9.680 hybrid contribution 0.265 1.215 0.364 1.296 sum 2.463 -8.034 2.184 8.683 Atomic orbital electron populations 1.21716 0.94908 1.02108 1.01239 1.20790 0.96312 0.92360 1.03424 1.19639 0.95756 0.95454 0.91498 1.20334 1.13774 0.96133 0.96590 1.20943 0.98226 0.94730 0.97096 1.21221 1.08307 1.00144 0.92647 1.18549 0.85772 0.89027 0.93375 1.19920 1.42681 0.91702 0.95652 0.89806 1.26794 0.92126 0.99289 0.99838 1.69762 1.31247 1.11667 1.31067 0.85362 0.79068 0.78359 0.78423 1.17799 1.18489 1.19223 1.20878 1.17658 0.98138 0.93025 1.22369 0.87729 0.72577 0.84856 1.90461 1.24561 1.50898 1.70409 1.24779 0.85485 0.96634 1.02992 0.85432 1.22149 1.04649 0.89638 1.03836 1.98746 1.37096 1.78600 1.98122 0.90237 0.94715 0.93108 0.89404 0.90659 0.86627 0.87575 0.87975 0.89939 0.87715 0.90512 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 9.89 71.98 0.71 -3.80 16 2 C -0.09 -2.98 5.61 29.85 0.17 -2.81 16 3 C -0.02 -0.98 5.17 -19.56 -0.10 -1.08 16 4 C -0.25 -10.54 9.62 22.33 0.21 -10.32 16 5 C -0.09 -4.21 9.97 22.21 0.22 -3.99 16 6 C -0.20 -10.61 8.69 22.73 0.20 -10.41 16 7 C 0.14 7.11 5.16 -19.85 -0.10 7.01 16 8 C -0.47 -24.67 7.73 23.40 0.18 -24.49 16 9 H 0.08 4.26 5.87 -2.91 -0.02 4.25 16 10 C 0.04 1.82 5.20 85.41 0.44 2.27 16 11 N -0.81 -42.23 10.92 21.90 0.24 -41.99 16 12 Si 0.97 38.42 29.59 68.60 2.03 40.45 16 13 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 14 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 15 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 16 C -0.29 -13.81 4.91 -18.55 -0.09 -13.90 16 17 C 0.45 18.96 3.59 27.87 0.10 19.06 16 18 O -0.49 -22.85 16.75 -3.21 -0.05 -22.90 16 19 C -0.05 -1.80 3.75 29.84 0.11 -1.68 16 20 H 0.13 3.79 8.14 -2.39 -0.02 3.77 16 21 C -0.15 -3.52 7.94 71.98 0.57 -2.95 16 22 Cl -0.15 -5.59 24.72 -2.72 -0.07 -5.66 16 23 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 24 H 0.03 1.29 7.00 -2.39 -0.02 1.28 16 25 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.09 2.41 8.06 -2.39 -0.02 2.39 16 27 H 0.08 2.23 3.99 -2.38 -0.01 2.22 16 28 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 29 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 30 H 0.10 5.57 6.21 -2.91 -0.02 5.55 16 31 H 0.29 13.59 8.29 -92.71 -0.77 12.82 16 32 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.08 1.93 7.06 -2.39 -0.02 1.92 16 34 H 0.09 1.89 7.76 -2.39 -0.02 1.88 16 Total: -1.00 -61.13 293.47 5.89 -55.24 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 1.11 Total: 21.96 kcal Atomic # 6 Polarization: -49.73 SS G_CDS: 2.63 Total: -47.10 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.24 Total: -41.99 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.05 Total: -22.90 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Atomic # 17 Polarization: -5.59 SS G_CDS: -0.07 Total: -5.66 kcal Total: -61.13 5.89 -55.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396051355.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.138 kcal (2) G-P(sol) polarization free energy of solvation -61.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds