Wall clock time and date at job start Mon Mar 30 2020 07:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50707 * 109.46652 * 2 1 4 4 C 1.37643 * 120.12353 * 265.29178 * 3 2 1 5 5 C 1.38614 * 120.24137 * 180.25756 * 4 3 2 6 6 C 1.50700 * 119.74778 * 179.72435 * 5 4 3 7 7 H 1.09007 * 109.47221 * 4.72358 * 6 5 4 8 8 Cl 1.80298 * 109.47593 * 124.71925 * 6 5 4 9 9 C 1.50700 * 109.47318 * 244.72686 * 6 5 4 10 10 C 1.50699 * 119.99800 * 274.72233 * 9 6 5 11 11 O 1.20761 * 120.00049 * 94.99171 * 9 6 5 12 12 C 1.38649 * 120.50608 * 359.44192 * 5 4 3 13 13 C 1.37595 * 120.24927 * 0.28049 * 12 5 4 14 14 C 1.40697 * 120.12936 * 85.00126 * 3 2 1 15 15 C 1.41392 * 120.24146 * 0.03451 * 14 3 2 16 16 H 1.07996 * 120.00476 * 334.15757 * 15 14 3 17 17 C 1.39954 * 119.99626 * 154.15601 * 15 14 3 18 18 N 1.30817 * 119.99925 * 343.53665 * 17 15 14 19 19 Si 1.86801 * 119.99821 * 163.53344 * 17 15 14 20 20 H 1.48497 * 109.46879 * 90.00253 * 19 17 15 21 21 H 1.48499 * 109.47033 * 209.99862 * 19 17 15 22 22 H 1.48495 * 109.47177 * 330.00034 * 19 17 15 23 23 H 1.09001 * 109.47641 * 300.00308 * 1 2 3 24 24 H 1.09003 * 109.47201 * 60.00713 * 1 2 3 25 25 H 1.09001 * 109.46458 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47472 * 240.00043 * 2 1 3 27 27 H 1.09003 * 109.47201 * 119.99286 * 2 1 3 28 28 H 1.08000 * 119.87852 * 359.97438 * 4 3 2 29 29 H 1.08999 * 109.47370 * 270.27465 * 10 9 6 30 30 H 1.09002 * 109.46906 * 30.27298 * 10 9 6 31 31 H 1.08997 * 109.47489 * 150.26757 * 10 9 6 32 32 H 1.08007 * 119.87836 * 180.25678 * 12 5 4 33 33 H 1.08002 * 120.13288 * 179.97438 * 13 12 5 34 34 H 0.97005 * 120.00314 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3546 2.0397 -1.1865 5 6 2.8218 3.3447 -1.1889 6 6 3.1773 4.0092 -2.4939 7 1 2.9241 3.3453 -3.3206 8 17 2.2537 5.5492 -2.6555 9 6 4.6549 4.3043 -2.5213 10 6 5.1811 5.5745 -1.9042 11 8 5.4167 3.5253 -3.0419 12 6 2.9590 4.0453 -0.0004 13 6 2.6374 3.4487 1.1970 14 6 2.1676 2.1221 1.2123 15 6 1.8344 1.4985 2.4367 16 1 1.1147 0.6935 2.4544 17 6 2.4372 1.9245 3.6257 18 7 3.5215 2.6553 3.5840 19 14 1.6936 1.4497 5.2722 20 1 2.2795 0.1633 5.7274 21 1 1.9869 2.5082 6.2715 22 1 0.2234 1.3000 5.1266 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8901 28 1 2.2474 1.5048 -2.1187 29 1 5.1901 6.3660 -2.6536 30 1 4.5391 5.8679 -1.0736 31 1 6.1945 5.4084 -1.5389 32 1 3.3201 5.0631 -0.0144 33 1 2.7454 3.9961 2.1218 34 1 3.9392 2.9510 4.4081 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396051759.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:24 Heat of formation + Delta-G solvation = -52.811970 kcal Electronic energy + Delta-G solvation = -17832.355808 eV Core-core repulsion = 14947.830916 eV Total energy + Delta-G solvation = -2884.524892 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.32566 -37.95123 -35.64078 -34.01875 -33.28706 -31.08396 -29.82276 -28.29765 -27.55185 -24.46248 -22.75096 -21.03104 -19.93039 -18.76540 -17.35851 -15.82561 -15.56932 -15.34170 -15.08643 -14.17699 -14.11955 -13.82972 -13.05985 -12.80355 -12.71341 -12.36760 -12.14801 -11.91784 -11.83571 -11.61364 -11.29676 -11.18299 -10.87168 -10.83029 -10.76972 -10.48247 -10.26251 -10.07988 -9.62170 -9.47752 -9.25008 -9.18585 -7.50614 -7.42054 -6.91912 -4.51334 1.86136 2.50104 2.81844 2.90884 2.98998 3.02628 3.14999 3.80874 4.23446 4.54767 5.12424 5.34924 5.47463 5.52816 5.65133 5.79468 5.90355 5.93113 6.11467 6.18203 6.27730 6.38352 6.54431 6.69827 6.83263 6.88436 7.03165 7.10781 7.23937 7.47980 7.62508 7.68446 7.85821 7.91035 8.13330 8.46241 8.72761 8.79762 10.00818 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021330 B = 0.006170 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.420399 B = 4536.671350 C = 5108.787415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.059 4.059 3 C -0.192 4.192 4 C -0.059 4.059 5 C -0.236 4.236 6 C 0.027 3.973 7 H 0.110 0.890 8 Cl -0.187 7.187 9 C 0.372 3.628 10 C -0.204 4.204 11 O -0.458 6.458 12 C -0.078 4.078 13 C -0.165 4.165 14 C 0.126 3.874 15 C -0.447 4.447 16 H 0.085 0.915 17 C 0.075 3.925 18 N -0.783 5.783 19 Si 0.907 3.093 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.259 1.259 23 H 0.058 0.942 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.284 2.766 -4.399 5.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.096 4.096 3 C -0.193 4.193 4 C -0.077 4.077 5 C -0.238 4.238 6 C -0.017 4.017 7 H 0.128 0.872 8 Cl -0.160 7.160 9 C 0.248 3.752 10 C -0.260 4.260 11 O -0.332 6.332 12 C -0.097 4.097 13 C -0.184 4.184 14 C 0.123 3.877 15 C -0.476 4.476 16 H 0.103 0.897 17 C -0.145 4.145 18 N -0.407 5.407 19 Si 0.731 3.269 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.183 1.183 23 H 0.077 0.923 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.138 0.862 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.761 2.579 -4.531 5.269 hybrid contribution -0.317 0.018 0.808 0.868 sum -1.078 2.597 -3.724 4.666 Atomic orbital electron populations 1.21737 0.96776 0.99687 1.01726 1.20115 0.94529 0.94328 1.00655 1.19635 1.10963 0.95693 0.93022 1.20203 0.97930 0.93232 0.96347 1.18391 1.18380 0.96542 0.90472 1.23289 0.90443 0.86874 1.01129 0.87158 1.98698 1.77890 1.40969 1.98489 1.24662 0.90059 0.86491 0.74006 1.22330 1.03426 0.97085 1.03190 1.90398 1.59279 1.47267 1.36273 1.20507 0.99322 0.97510 0.92356 1.21272 1.05541 0.95316 0.96277 1.17531 0.87626 0.90815 0.91691 1.19724 1.21033 1.16045 0.90776 0.89714 1.25991 0.93491 0.93305 1.01675 1.69810 1.13719 1.26557 1.30657 0.86311 0.80864 0.79136 0.80546 1.19350 1.19975 1.18285 0.92332 0.93682 0.94222 0.93740 0.91543 0.89154 0.88667 0.88777 0.89799 0.88818 0.86194 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.79 37.16 0.36 -2.11 16 2 C -0.06 -1.15 5.40 -27.88 -0.15 -1.30 16 3 C -0.19 -4.32 5.19 -103.91 -0.54 -4.86 16 4 C -0.06 -1.25 9.28 -39.66 -0.37 -1.62 16 5 C -0.24 -4.86 4.86 -104.33 -0.51 -5.37 16 6 C 0.03 0.46 3.35 -29.04 -0.10 0.37 16 7 H 0.11 1.83 7.87 -51.93 -0.41 1.43 16 8 Cl -0.19 -2.97 26.99 -51.86 -1.40 -4.37 16 9 C 0.37 6.42 6.19 -29.04 -0.18 6.24 16 10 C -0.20 -2.84 9.20 36.00 0.33 -2.51 16 11 O -0.46 -9.10 17.84 6.00 0.11 -8.99 16 12 C -0.08 -1.69 8.78 -39.66 -0.35 -2.04 16 13 C -0.16 -3.99 8.69 -38.87 -0.34 -4.33 16 14 C 0.13 3.10 5.56 -106.82 -0.59 2.51 16 15 C -0.45 -10.88 8.11 -37.74 -0.31 -11.19 16 16 H 0.08 1.97 6.09 -52.49 -0.32 1.65 16 17 C 0.07 1.75 5.16 -17.34 -0.09 1.66 16 18 N -0.78 -18.97 10.97 55.55 0.61 -18.36 16 19 Si 0.91 17.55 29.59 -169.99 -5.03 12.52 16 20 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 21 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 22 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 23 H 0.06 1.08 7.30 -51.93 -0.38 0.70 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.80 8.05 -51.93 -0.42 0.38 16 27 H 0.07 1.35 7.06 -51.93 -0.37 0.98 16 28 H 0.09 1.74 7.94 -52.49 -0.42 1.32 16 29 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.09 1.33 5.61 -51.93 -0.29 1.04 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.09 1.82 5.82 -52.48 -0.31 1.52 16 33 H 0.12 3.00 6.21 -52.49 -0.33 2.68 16 34 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 LS Contribution 299.09 15.07 4.51 4.51 Total: -1.00 -25.84 299.09 -8.09 -33.93 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -4.06 Total: 5.31 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -2.82 Total: -24.54 kcal Atomic # 7 Polarization: -18.97 SS G_CDS: 0.61 Total: -18.36 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.11 Total: -8.99 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.52 kcal Atomic # 17 Polarization: -2.97 SS G_CDS: -1.40 Total: -4.37 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -25.84 -8.09 -33.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396051759.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.886 kcal (2) G-P(sol) polarization free energy of solvation -25.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds