Wall clock time and date at job start Mon Mar 30 2020 07:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50707 * 109.46652 * 2 1 4 4 C 1.37643 * 120.12353 * 265.29178 * 3 2 1 5 5 C 1.38614 * 120.24137 * 180.25756 * 4 3 2 6 6 C 1.50700 * 119.74778 * 179.72435 * 5 4 3 7 7 H 1.09007 * 109.47221 * 4.72358 * 6 5 4 8 8 Cl 1.80298 * 109.47593 * 124.71925 * 6 5 4 9 9 C 1.50700 * 109.47318 * 244.72686 * 6 5 4 10 10 C 1.50699 * 119.99800 * 274.72233 * 9 6 5 11 11 O 1.20761 * 120.00049 * 94.99171 * 9 6 5 12 12 C 1.38649 * 120.50608 * 359.44192 * 5 4 3 13 13 C 1.37595 * 120.24927 * 0.28049 * 12 5 4 14 14 C 1.40697 * 120.12936 * 85.00126 * 3 2 1 15 15 C 1.41392 * 120.24146 * 0.03451 * 14 3 2 16 16 H 1.07996 * 120.00476 * 334.15757 * 15 14 3 17 17 C 1.39954 * 119.99626 * 154.15601 * 15 14 3 18 18 N 1.30817 * 119.99925 * 343.53665 * 17 15 14 19 19 Si 1.86801 * 119.99821 * 163.53344 * 17 15 14 20 20 H 1.48497 * 109.46879 * 90.00253 * 19 17 15 21 21 H 1.48499 * 109.47033 * 209.99862 * 19 17 15 22 22 H 1.48495 * 109.47177 * 330.00034 * 19 17 15 23 23 H 1.09001 * 109.47641 * 300.00308 * 1 2 3 24 24 H 1.09003 * 109.47201 * 60.00713 * 1 2 3 25 25 H 1.09001 * 109.46458 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47472 * 240.00043 * 2 1 3 27 27 H 1.09003 * 109.47201 * 119.99286 * 2 1 3 28 28 H 1.08000 * 119.87852 * 359.97438 * 4 3 2 29 29 H 1.08999 * 109.47370 * 270.27465 * 10 9 6 30 30 H 1.09002 * 109.46906 * 30.27298 * 10 9 6 31 31 H 1.08997 * 109.47489 * 150.26757 * 10 9 6 32 32 H 1.08007 * 119.87836 * 180.25678 * 12 5 4 33 33 H 1.08002 * 120.13288 * 179.97438 * 13 12 5 34 34 H 0.97005 * 120.00314 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3546 2.0397 -1.1865 5 6 2.8218 3.3447 -1.1889 6 6 3.1773 4.0092 -2.4939 7 1 2.9241 3.3453 -3.3206 8 17 2.2537 5.5492 -2.6555 9 6 4.6549 4.3043 -2.5213 10 6 5.1811 5.5745 -1.9042 11 8 5.4167 3.5253 -3.0419 12 6 2.9590 4.0453 -0.0004 13 6 2.6374 3.4487 1.1970 14 6 2.1676 2.1221 1.2123 15 6 1.8344 1.4985 2.4367 16 1 1.1147 0.6935 2.4544 17 6 2.4372 1.9245 3.6257 18 7 3.5215 2.6553 3.5840 19 14 1.6936 1.4497 5.2722 20 1 2.2795 0.1633 5.7274 21 1 1.9869 2.5082 6.2715 22 1 0.2234 1.3000 5.1266 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8901 28 1 2.2474 1.5048 -2.1187 29 1 5.1901 6.3660 -2.6536 30 1 4.5391 5.8679 -1.0736 31 1 6.1945 5.4084 -1.5389 32 1 3.3201 5.0631 -0.0144 33 1 2.7454 3.9961 2.1218 34 1 3.9392 2.9510 4.4081 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396051759.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:24 Heat of formation + Delta-G solvation = -63.833143 kcal Electronic energy + Delta-G solvation = -17832.833722 eV Core-core repulsion = 14947.830916 eV Total energy + Delta-G solvation = -2885.002806 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.79871 -39.60375 -37.05853 -35.70001 -34.87598 -32.63885 -31.26088 -29.91972 -29.08000 -26.10488 -24.32539 -22.74467 -21.45777 -20.27602 -19.11207 -17.43543 -16.99361 -16.77831 -16.62190 -15.76854 -15.73426 -15.32122 -14.51638 -14.36507 -14.27171 -13.89688 -13.64507 -13.31548 -13.21909 -13.09109 -12.86237 -12.74858 -12.38372 -12.34798 -12.27024 -11.98413 -11.82506 -11.55324 -11.19457 -11.12793 -10.95590 -10.63865 -9.25684 -9.14901 -8.64190 -6.31962 0.41411 0.96021 1.15059 1.33960 1.40117 1.51446 1.59101 2.20006 2.66791 3.04474 3.69716 3.80924 3.90880 4.19454 4.35714 4.40165 4.46544 4.59162 4.62284 4.73703 4.80314 5.03981 5.09092 5.14658 5.20756 5.25884 5.37383 5.49653 5.55435 5.75724 5.95714 6.08785 6.14956 6.28593 6.38435 6.69079 6.95232 7.03088 8.30958 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.021330 B = 0.006170 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.420399 B = 4536.671350 C = 5108.787415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.058 4.058 3 C -0.202 4.202 4 C -0.073 4.073 5 C -0.228 4.228 6 C 0.025 3.975 7 H 0.121 0.879 8 Cl -0.165 7.165 9 C 0.372 3.628 10 C -0.201 4.201 11 O -0.487 6.487 12 C -0.080 4.080 13 C -0.191 4.191 14 C 0.096 3.904 15 C -0.477 4.477 16 H 0.085 0.915 17 C 0.036 3.964 18 N -0.818 5.818 19 Si 0.974 3.026 20 H -0.264 1.264 21 H -0.269 1.269 22 H -0.258 1.258 23 H 0.040 0.960 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.695 3.057 -5.315 6.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.096 4.096 3 C -0.204 4.204 4 C -0.091 4.091 5 C -0.230 4.230 6 C -0.019 4.019 7 H 0.139 0.861 8 Cl -0.138 7.138 9 C 0.250 3.750 10 C -0.257 4.257 11 O -0.363 6.363 12 C -0.098 4.098 13 C -0.211 4.211 14 C 0.093 3.907 15 C -0.506 4.506 16 H 0.103 0.897 17 C -0.180 4.180 18 N -0.443 5.443 19 Si 0.796 3.204 20 H -0.189 1.189 21 H -0.194 1.194 22 H -0.181 1.181 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.131 0.869 29 H 0.143 0.857 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.131 0.869 33 H 0.120 0.880 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.181 2.880 -5.457 6.282 hybrid contribution -0.176 0.010 0.910 0.927 sum -1.357 2.890 -4.547 5.556 Atomic orbital electron populations 1.21648 0.95026 1.01308 1.01109 1.20140 0.96030 0.92653 1.00751 1.20035 1.10445 0.97053 0.92834 1.20545 0.97861 0.93820 0.96901 1.18681 1.16357 0.96402 0.91526 1.23212 0.91204 0.87752 0.99716 0.86089 1.98701 1.77391 1.39342 1.98375 1.25021 0.89577 0.87139 0.73254 1.22370 1.03545 0.96108 1.03698 1.90397 1.59731 1.48462 1.37709 1.20701 0.98724 0.98431 0.91936 1.21277 1.07460 0.95698 0.96647 1.17869 0.88619 0.91364 0.92806 1.19910 1.22029 1.16966 0.91666 0.89720 1.26742 0.93487 0.93082 1.04680 1.69865 1.14859 1.27937 1.31686 0.85306 0.79870 0.78903 0.76365 1.18879 1.19356 1.18143 0.94085 0.93082 0.91474 0.92006 0.92949 0.86944 0.85660 0.88851 0.89074 0.86904 0.87951 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 9.79 71.98 0.70 -3.79 16 2 C -0.06 -2.25 5.40 29.85 0.16 -2.09 16 3 C -0.20 -9.13 5.19 -19.40 -0.10 -9.23 16 4 C -0.07 -3.03 9.28 22.22 0.21 -2.83 16 5 C -0.23 -9.12 4.86 -19.68 -0.10 -9.21 16 6 C 0.03 0.83 3.35 29.10 0.10 0.93 16 7 H 0.12 3.72 7.87 -2.38 -0.02 3.71 16 8 Cl -0.16 -4.81 26.99 -2.72 -0.07 -4.89 16 9 C 0.37 12.10 6.19 29.10 0.18 12.28 16 10 C -0.20 -5.09 9.20 71.24 0.66 -4.43 16 11 O -0.49 -18.60 17.84 -1.45 -0.03 -18.63 16 12 C -0.08 -3.41 8.78 22.22 0.20 -3.22 16 13 C -0.19 -9.50 8.69 22.73 0.20 -9.31 16 14 C 0.10 4.84 5.56 -21.29 -0.12 4.72 16 15 C -0.48 -23.91 8.11 23.46 0.19 -23.72 16 16 H 0.08 4.07 6.09 -2.91 -0.02 4.05 16 17 C 0.04 1.72 5.16 85.26 0.44 2.16 16 18 N -0.82 -40.88 10.97 21.83 0.24 -40.64 16 19 Si 0.97 36.53 29.59 68.60 2.03 38.56 16 20 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 21 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 22 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 23 H 0.04 1.50 7.30 -2.39 -0.02 1.48 16 24 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.06 2.13 8.05 -2.39 -0.02 2.11 16 27 H 0.05 2.14 7.06 -2.39 -0.02 2.13 16 28 H 0.11 4.10 7.94 -2.91 -0.02 4.08 16 29 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.09 2.40 5.61 -2.39 -0.01 2.39 16 31 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.11 4.28 5.82 -2.91 -0.02 4.26 16 33 H 0.10 5.35 6.21 -2.91 -0.02 5.34 16 34 H 0.29 13.08 8.30 -92.70 -0.77 12.31 16 Total: -1.00 -56.09 299.09 6.00 -50.10 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 1.11 Total: 23.24 kcal Atomic # 6 Polarization: -50.46 SS G_CDS: 2.71 Total: -47.75 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.24 Total: -40.64 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.03 Total: -18.63 kcal Atomic # 14 Polarization: 36.53 SS G_CDS: 2.03 Total: 38.56 kcal Atomic # 17 Polarization: -4.81 SS G_CDS: -0.07 Total: -4.89 kcal Total: -56.09 6.00 -50.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396051759.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.736 kcal (2) G-P(sol) polarization free energy of solvation -56.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds