Wall clock time and date at job start Mon Mar 30 2020 07:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50695 * 109.47341 * 2 1 4 4 C 1.38721 * 119.38809 * 90.00120 * 3 2 1 5 5 C 1.38012 * 121.30810 * 179.72328 * 4 3 2 6 6 C 1.39688 * 120.02194 * 0.25032 * 5 4 3 7 7 C 1.46600 * 120.59258 * 179.97438 * 6 5 4 8 8 O 1.21338 * 119.99973 * 282.23806 * 7 6 5 9 9 C 1.50702 * 119.99916 * 102.23563 * 7 6 5 10 10 H 1.09002 * 109.46929 * 152.74748 * 9 7 6 11 11 C 1.53000 * 109.46827 * 272.74428 * 9 7 6 12 12 Cl 1.80295 * 109.47157 * 32.74493 * 9 7 6 13 13 C 1.46630 * 118.82014 * 0.02562 * 6 5 4 14 14 C 1.40722 * 120.62148 * 180.02562 * 13 6 5 15 15 H 1.08008 * 120.00127 * 331.15846 * 14 13 6 16 16 C 1.40397 * 119.99958 * 151.14646 * 14 13 6 17 17 N 1.30556 * 119.99934 * 343.94979 * 16 14 13 18 18 Si 1.86805 * 119.99721 * 163.94610 * 16 14 13 19 19 H 1.48500 * 109.47237 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46995 * 120.00476 * 18 16 14 21 21 H 1.48500 * 109.47180 * 240.00581 * 18 16 14 22 22 C 1.37512 * 119.38568 * 270.23921 * 3 2 1 23 23 H 1.09000 * 109.47472 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46784 * 300.00670 * 1 2 3 25 25 H 1.09001 * 109.46869 * 60.00024 * 1 2 3 26 26 H 1.09006 * 109.47120 * 239.99798 * 2 1 3 27 27 H 1.09001 * 109.46869 * 119.99976 * 2 1 3 28 28 H 1.08003 * 119.34142 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.99061 * 180.27727 * 5 4 3 30 30 H 1.08995 * 109.47393 * 60.00182 * 11 9 7 31 31 H 1.09007 * 109.46756 * 180.02562 * 11 9 7 32 32 H 1.09001 * 109.47367 * 299.99965 * 11 9 7 33 33 H 0.97001 * 119.99329 * 179.97438 * 17 16 14 34 34 H 1.07999 * 120.06617 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2594 2.0625 1.2087 5 6 2.7246 3.3611 1.2549 6 6 2.9715 4.0576 0.0696 7 6 3.4652 5.4376 0.1041 8 8 2.7012 6.3495 0.3429 9 6 4.9217 5.7235 -0.1569 10 1 5.0273 6.7294 -0.5633 11 6 5.7049 5.6178 1.1532 12 17 5.5664 4.5263 -1.3409 13 6 2.7270 3.3845 -1.2099 14 6 2.9635 4.0503 -2.4269 15 1 2.8698 5.1249 -2.4816 16 6 3.3214 3.3178 -3.5699 17 7 3.7389 2.0864 -3.4518 18 14 3.2002 4.1051 -5.2596 19 1 2.7041 5.4980 -5.1222 20 1 4.5415 4.1184 -5.8968 21 1 2.2592 3.3249 -6.1028 22 6 2.2526 2.0586 -1.1982 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.0721 1.5341 2.1318 29 1 2.8982 3.8387 2.2079 30 1 5.5993 4.6120 1.5595 31 1 6.7583 5.8251 0.9644 32 1 5.3151 6.3416 1.8689 33 1 3.9858 1.5803 -4.2416 34 1 2.0656 1.5425 -2.1283 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396051818.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:21 Heat of formation + Delta-G solvation = -58.837055 kcal Electronic energy + Delta-G solvation = -18230.608634 eV Core-core repulsion = 15345.822475 eV Total energy + Delta-G solvation = -2884.786159 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.61050 -38.90094 -36.78524 -35.84563 -34.40488 -33.22556 -31.50169 -30.14027 -27.41298 -26.07400 -24.33767 -22.79399 -21.98065 -20.23623 -18.84371 -17.59329 -16.98791 -16.84584 -16.17070 -15.80625 -15.33224 -15.10235 -14.54825 -14.40692 -14.05017 -13.89253 -13.57786 -13.41521 -13.24174 -13.20782 -12.84630 -12.58189 -12.52717 -12.22576 -12.11269 -11.79756 -11.65583 -11.43873 -11.30108 -11.18821 -10.87617 -10.27084 -9.24429 -9.00001 -8.62898 -6.26322 0.65022 0.95918 1.14138 1.37475 1.48016 1.51667 1.60627 2.19376 2.75446 3.14019 3.68007 3.86871 3.89359 4.21582 4.29330 4.47914 4.56759 4.66955 4.73207 4.76106 4.86934 4.96866 5.09031 5.10515 5.11745 5.15610 5.33622 5.43628 5.49045 5.71149 5.98365 6.06378 6.28271 6.33770 6.46440 6.69712 6.90139 7.04777 8.31224 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.013115 B = 0.011294 C = 0.007137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.492784 B = 2478.561384 C = 3922.331249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.079 4.079 3 C -0.055 4.055 4 C -0.248 4.248 5 C -0.056 4.056 6 C -0.310 4.310 7 C 0.445 3.555 8 O -0.499 6.499 9 C -0.057 4.057 10 H 0.123 0.877 11 C -0.140 4.140 12 Cl -0.137 7.137 13 C 0.141 3.859 14 C -0.452 4.452 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.794 5.794 18 Si 0.950 3.050 19 H -0.264 1.264 20 H -0.265 1.265 21 H -0.262 1.262 22 C -0.188 4.188 23 H 0.074 0.926 24 H 0.053 0.947 25 H 0.039 0.961 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.289 0.711 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.557 -0.160 3.621 4.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.116 4.116 3 C -0.056 4.056 4 C -0.267 4.267 5 C -0.074 4.074 6 C -0.312 4.312 7 C 0.325 3.675 8 O -0.377 6.377 9 C -0.102 4.102 10 H 0.141 0.859 11 C -0.197 4.197 12 Cl -0.111 7.111 13 C 0.138 3.862 14 C -0.480 4.480 15 H 0.077 0.923 16 C -0.158 4.158 17 N -0.419 5.419 18 Si 0.772 3.228 19 H -0.188 1.188 20 H -0.189 1.189 21 H -0.187 1.187 22 C -0.207 4.207 23 H 0.093 0.907 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.132 0.868 29 H 0.127 0.873 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.312 0.013 3.521 4.212 hybrid contribution 0.099 0.298 -1.023 1.070 sum 2.410 0.311 2.498 3.485 Atomic orbital electron populations 1.21650 0.94255 1.01974 1.01330 1.20512 0.96616 0.92559 1.01900 1.19868 0.96710 0.95903 0.93095 1.20286 1.13846 0.95948 0.96598 1.20677 0.97119 0.94637 0.95012 1.20994 1.18635 0.96649 0.94953 1.22494 0.89250 0.88560 0.67216 1.90455 1.59356 1.49001 1.38852 1.24628 0.94061 0.96154 0.95314 0.85881 1.21971 1.01094 1.03955 0.92671 1.98790 1.87668 1.62470 1.62129 1.18501 0.86229 0.91357 0.90159 1.19352 1.40744 0.94115 0.93827 0.92292 1.26335 0.91500 0.94722 1.03264 1.69723 1.28518 1.10432 1.33178 0.85615 0.79230 0.79831 0.78110 1.18784 1.18937 1.18678 1.20996 1.06913 0.96546 0.96241 0.90686 0.92762 0.94225 0.92465 0.90596 0.86751 0.87280 0.91389 0.88244 0.89627 0.90004 0.88142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 9.90 71.98 0.71 -3.36 16 2 C -0.08 -2.74 6.03 29.85 0.18 -2.56 16 3 C -0.06 -2.41 5.12 -19.92 -0.10 -2.51 16 4 C -0.25 -10.36 9.61 22.33 0.21 -10.14 16 5 C -0.06 -2.44 9.80 22.57 0.22 -2.22 16 6 C -0.31 -14.70 5.09 -18.55 -0.09 -14.80 16 7 C 0.45 19.51 4.83 27.87 0.13 19.64 16 8 O -0.50 -23.75 17.86 -3.21 -0.06 -23.81 16 9 C -0.06 -2.02 3.75 29.85 0.11 -1.91 16 10 H 0.12 3.94 8.14 -2.39 -0.02 3.92 16 11 C -0.14 -3.79 9.30 71.98 0.67 -3.12 16 12 Cl -0.14 -5.58 24.50 -2.72 -0.07 -5.65 16 13 C 0.14 7.18 5.03 -19.85 -0.10 7.08 16 14 C -0.45 -22.98 5.98 23.40 0.14 -22.84 16 15 H 0.06 3.10 7.48 -2.91 -0.02 3.07 16 16 C 0.06 2.89 5.14 85.41 0.44 3.33 16 17 N -0.79 -38.53 11.16 21.90 0.24 -38.29 16 18 Si 0.95 37.36 29.59 68.60 2.03 39.39 16 19 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 20 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 21 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 22 C -0.19 -9.32 8.29 22.73 0.19 -9.14 16 23 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.06 2.04 8.07 -2.38 -0.02 2.02 16 27 H 0.08 2.33 8.07 -2.39 -0.02 2.31 16 28 H 0.11 4.11 8.06 -2.91 -0.02 4.09 16 29 H 0.11 4.15 8.06 -2.91 -0.02 4.12 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 31 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 32 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.29 12.77 8.29 -92.71 -0.77 12.00 16 34 H 0.10 5.21 6.46 -2.91 -0.02 5.19 16 Total: -1.00 -57.71 303.78 5.96 -51.75 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 1.09 Total: 19.15 kcal Atomic # 6 Polarization: -45.26 SS G_CDS: 2.71 Total: -42.55 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.24 Total: -38.29 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.06 Total: -23.81 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Atomic # 17 Polarization: -5.58 SS G_CDS: -0.07 Total: -5.65 kcal Total: -57.71 5.96 -51.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396051818.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.086 kcal (2) G-P(sol) polarization free energy of solvation -57.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds