Wall clock time and date at job start Mon Mar 30 2020 07:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50697 * 109.47035 * 2 1 4 4 C 1.38725 * 119.38494 * 90.00183 * 3 2 1 5 5 C 1.38010 * 121.30504 * 180.27919 * 4 3 2 6 6 C 1.39691 * 120.02218 * 359.48396 * 5 4 3 7 7 C 1.46603 * 120.59361 * 180.24949 * 6 5 4 8 8 O 1.21337 * 120.00198 * 174.68312 * 7 6 5 9 9 C 1.50697 * 119.99706 * 354.68428 * 7 6 5 10 10 H 1.09002 * 109.47270 * 35.00094 * 9 7 6 11 11 C 1.52999 * 109.47240 * 274.99448 * 9 7 6 12 12 Cl 1.80305 * 109.47287 * 154.99841 * 9 7 6 13 13 C 1.46631 * 118.81852 * 0.50211 * 6 5 4 14 14 C 1.40724 * 120.61895 * 179.77064 * 13 6 5 15 15 H 1.07993 * 120.00319 * 324.71250 * 14 13 6 16 16 C 1.40400 * 119.99663 * 144.70952 * 14 13 6 17 17 N 1.30561 * 119.99720 * 168.62810 * 16 14 13 18 18 Si 1.86798 * 120.00070 * 348.62415 * 16 14 13 19 19 H 1.48501 * 109.47144 * 86.50854 * 18 16 14 20 20 H 1.48507 * 109.47158 * 206.50653 * 18 16 14 21 21 H 1.48503 * 109.47081 * 326.50595 * 18 16 14 22 22 C 1.37504 * 119.38388 * 270.02084 * 3 2 1 23 23 H 1.09004 * 109.46883 * 60.00114 * 1 2 3 24 24 H 1.08994 * 109.46911 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46680 * 300.00094 * 1 2 3 26 26 H 1.08998 * 109.46733 * 239.99476 * 2 1 3 27 27 H 1.09004 * 109.46883 * 119.99886 * 2 1 3 28 28 H 1.07992 * 119.34589 * 359.97438 * 4 3 2 29 29 H 1.07996 * 119.99098 * 179.74137 * 5 4 3 30 30 H 1.09008 * 109.47068 * 60.00585 * 11 9 7 31 31 H 1.09001 * 109.47237 * 179.97438 * 11 9 7 32 32 H 1.09002 * 109.47516 * 300.00495 * 11 9 7 33 33 H 0.97005 * 119.99987 * 180.02562 * 17 16 14 34 34 H 1.08000 * 120.07241 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2593 2.0625 1.2088 5 6 2.7136 3.3649 1.2550 6 6 2.9646 4.0601 0.0697 7 6 3.4526 5.4421 0.1042 8 8 3.7588 6.0033 -0.9271 9 6 3.5740 6.1655 1.4206 10 1 3.8716 5.4604 2.1967 11 6 2.2251 6.7879 1.7868 12 17 4.8167 7.4644 1.2802 13 6 2.7259 3.3849 -1.2098 14 6 2.9614 4.0511 -2.4268 15 1 2.7625 5.1093 -2.5104 16 6 3.4551 3.3401 -3.5322 17 7 3.4651 3.8953 -4.7139 18 14 4.0977 1.6000 -3.3123 19 1 2.9705 0.6390 -3.4182 20 1 5.1001 1.3054 -4.3676 21 1 4.7333 1.4722 -1.9762 22 6 2.2568 2.0570 -1.1981 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 2.0721 1.5342 2.1318 29 1 2.8792 3.8454 2.2079 30 1 1.4738 6.0026 1.8717 31 1 2.3128 7.3108 2.7391 32 1 1.9275 7.4930 1.0107 33 1 3.8059 3.4039 -5.4777 34 1 2.0740 1.5395 -2.1283 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396051820.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:28 Heat of formation + Delta-G solvation = -46.200608 kcal Electronic energy + Delta-G solvation = -17978.935250 eV Core-core repulsion = 15094.697049 eV Total energy + Delta-G solvation = -2884.238202 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.86658 -37.31664 -35.50433 -34.13237 -33.25360 -32.08383 -30.47695 -28.73673 -25.84651 -24.32208 -23.17480 -21.46055 -20.38258 -18.57191 -17.53015 -16.21780 -15.36767 -15.05486 -14.47983 -14.21930 -14.15984 -13.75655 -13.22736 -13.03265 -12.67079 -12.54292 -12.22315 -12.02228 -11.97689 -11.74985 -11.38209 -11.25747 -10.96132 -10.78239 -10.56644 -10.42524 -10.36396 -10.09612 -9.99766 -9.84802 -9.31703 -8.41157 -7.84810 -7.55236 -7.11264 -4.66343 1.75382 2.48647 2.56026 2.98852 3.06910 3.18480 3.50129 3.82291 4.35661 4.69609 5.07339 5.21341 5.27679 5.39092 5.43557 5.72672 5.76105 5.79665 5.85444 6.05506 6.08286 6.17780 6.21979 6.23626 6.43973 6.51511 6.55186 6.67301 7.01291 7.19607 7.33432 7.54048 7.69145 7.89806 8.21053 8.48971 8.61211 8.74789 9.84730 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016246 B = 0.008201 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.052163 B = 3413.306026 C = 4720.868564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 C -0.021 4.021 4 C -0.254 4.254 5 C -0.028 4.028 6 C -0.286 4.286 7 C 0.380 3.620 8 O -0.439 6.439 9 C -0.046 4.046 10 H 0.112 0.888 11 C -0.146 4.146 12 Cl -0.174 7.174 13 C 0.119 3.881 14 C -0.384 4.384 15 H 0.116 0.884 16 C 0.078 3.922 17 N -0.778 5.778 18 Si 0.914 3.086 19 H -0.263 1.263 20 H -0.287 1.287 21 H -0.244 1.244 22 C -0.233 4.233 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.291 0.709 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.561 -3.254 9.314 10.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 C -0.022 4.022 4 C -0.273 4.273 5 C -0.047 4.047 6 C -0.289 4.289 7 C 0.260 3.740 8 O -0.316 6.316 9 C -0.090 4.090 10 H 0.130 0.870 11 C -0.204 4.204 12 Cl -0.147 7.147 13 C 0.114 3.886 14 C -0.410 4.410 15 H 0.134 0.866 16 C -0.145 4.145 17 N -0.400 5.400 18 Si 0.739 3.261 19 H -0.189 1.189 20 H -0.214 1.214 21 H -0.167 1.167 22 C -0.252 4.252 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.254 -2.783 8.461 9.188 hybrid contribution 0.341 -0.703 0.120 0.790 sum -1.913 -3.486 8.581 9.457 Atomic orbital electron populations 1.21700 0.95253 1.00665 1.02288 1.20589 0.95921 0.94449 1.01626 1.19476 0.95227 0.93975 0.93501 1.20051 1.15263 0.96187 0.95777 1.20905 0.94199 0.93992 0.95563 1.20691 1.18924 0.95882 0.93399 1.21653 0.76874 0.87384 0.88040 1.90560 1.39137 1.67138 1.34782 1.24736 0.91268 0.90788 1.02238 0.86979 1.21954 0.94118 1.01878 1.02422 1.98699 1.60277 1.56884 1.98863 1.18594 0.87989 0.90280 0.91707 1.20051 1.30102 0.99676 0.91148 0.86628 1.26454 0.93597 1.00513 0.93924 1.69529 1.31086 1.39183 1.00245 0.86321 0.79071 0.80692 0.79976 1.18921 1.21412 1.16674 1.21088 1.10567 0.97190 0.96326 0.92503 0.93285 0.92657 0.92021 0.91792 0.88592 0.88241 0.90187 0.91275 0.91139 0.89770 0.87415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.90 37.16 0.37 -1.62 16 2 C -0.09 -1.42 6.03 -27.88 -0.17 -1.58 16 3 C -0.02 -0.42 5.12 -104.71 -0.54 -0.96 16 4 C -0.25 -4.76 9.61 -39.48 -0.38 -5.14 16 5 C -0.03 -0.54 9.39 -39.12 -0.37 -0.90 16 6 C -0.29 -6.40 6.06 -102.60 -0.62 -7.02 16 7 C 0.38 8.25 6.24 -30.94 -0.19 8.05 16 8 O -0.44 -11.21 13.75 5.51 0.08 -11.13 16 9 C -0.05 -0.76 3.16 -27.88 -0.09 -0.85 16 10 H 0.11 1.62 6.56 -51.93 -0.34 1.28 16 11 C -0.15 -2.04 9.30 37.16 0.35 -1.69 16 12 Cl -0.17 -3.03 28.00 -51.86 -1.45 -4.49 16 13 C 0.12 2.94 5.20 -104.59 -0.54 2.39 16 14 C -0.38 -10.34 8.31 -37.83 -0.31 -10.66 16 15 H 0.12 3.42 6.33 -52.49 -0.33 3.09 16 16 C 0.08 2.00 5.47 -17.28 -0.09 1.91 16 17 N -0.78 -20.30 13.91 55.57 0.77 -19.53 16 18 Si 0.91 20.20 24.57 -169.99 -4.18 16.02 16 19 H -0.26 -5.49 6.43 56.52 0.36 -5.12 16 20 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.24 -5.57 7.03 56.52 0.40 -5.17 16 22 C -0.23 -5.27 6.82 -38.87 -0.27 -5.54 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.98 8.07 -51.93 -0.42 0.56 16 27 H 0.06 0.91 8.07 -51.93 -0.42 0.49 16 28 H 0.10 1.56 8.06 -52.49 -0.42 1.13 16 29 H 0.10 1.54 6.39 -52.49 -0.34 1.20 16 30 H 0.08 1.06 8.14 -51.92 -0.42 0.63 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.29 6.80 8.29 -40.82 -0.34 6.46 16 34 H 0.11 2.43 4.77 -52.49 -0.25 2.18 16 LS Contribution 296.80 15.07 4.47 4.47 Total: -1.00 -27.95 296.80 -7.40 -35.35 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -4.23 Total: 2.91 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -2.86 Total: -23.61 kcal Atomic # 7 Polarization: -20.30 SS G_CDS: 0.77 Total: -19.53 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.08 Total: -11.13 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.18 Total: 16.02 kcal Atomic # 17 Polarization: -3.03 SS G_CDS: -1.45 Total: -4.49 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.95 -7.40 -35.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396051820.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.853 kcal (2) G-P(sol) polarization free energy of solvation -27.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds