Wall clock time and date at job start Mon Mar 30 2020 07:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47474 * 2 1 4 4 C 1.40734 * 120.12869 * 82.56648 * 3 2 1 5 5 C 1.41392 * 120.24275 * 0.02562 * 4 3 2 6 6 H 1.07998 * 120.00464 * 326.06550 * 5 4 3 7 7 C 1.39951 * 120.00052 * 146.06343 * 5 4 3 8 8 N 1.30823 * 119.99661 * 1.67077 * 7 5 4 9 9 Si 1.86796 * 120.00264 * 181.66820 * 7 5 4 10 10 H 1.48496 * 109.47051 * 60.00151 * 9 7 5 11 11 H 1.48498 * 109.47111 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47017 * 300.00288 * 9 7 5 13 13 C 1.40699 * 119.50885 * 179.77692 * 4 3 2 14 14 C 1.37639 * 119.74532 * 0.50259 * 13 4 3 15 15 C 1.38607 * 120.24878 * 359.74929 * 14 13 4 16 16 C 1.37599 * 120.12632 * 262.85252 * 3 2 1 17 17 C 1.50702 * 119.87629 * 359.94613 * 16 3 2 18 18 H 1.08992 * 109.47382 * 163.20488 * 17 16 3 19 19 Cl 1.80303 * 109.46714 * 43.20673 * 17 16 3 20 20 C 1.50704 * 109.47193 * 283.20941 * 17 16 3 21 21 C 1.50697 * 119.99834 * 276.38148 * 20 17 16 22 22 O 1.20753 * 120.00038 * 96.38316 * 20 17 16 23 23 H 1.09008 * 109.46958 * 49.31228 * 1 2 3 24 24 H 1.09000 * 109.47358 * 169.30822 * 1 2 3 25 25 H 1.09002 * 109.47526 * 289.31392 * 1 2 3 26 26 H 1.09009 * 109.47002 * 120.00054 * 2 1 3 27 27 H 1.09005 * 109.46869 * 239.99229 * 2 1 3 28 28 H 0.97003 * 120.00281 * 179.97438 * 8 7 5 29 29 H 1.08006 * 120.12423 * 180.25340 * 13 4 3 30 30 H 1.07998 * 119.87049 * 179.72821 * 14 13 4 31 31 H 1.07994 * 119.74955 * 180.02562 * 15 14 13 32 32 H 1.09003 * 109.47383 * 90.00011 * 21 20 17 33 33 H 1.08997 * 109.47183 * 210.00366 * 21 20 17 34 34 H 1.09008 * 109.47305 * 329.99884 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.1194 2.1392 1.2070 5 6 1.7370 1.5330 2.4258 6 1 0.9248 0.8214 2.4435 7 6 2.4109 1.8552 3.6093 8 7 3.3731 2.7414 3.5936 9 14 1.9366 1.0198 5.2113 10 1 2.1250 -0.4473 5.0792 11 1 2.7943 1.5325 6.3097 12 1 0.5131 1.3104 5.5185 13 6 2.5948 3.4634 1.1925 14 6 2.9593 4.0451 -0.0005 15 6 2.8644 3.3297 -1.1839 16 6 2.4022 2.0225 -1.1809 17 6 2.3053 1.2576 -2.4757 18 1 2.3454 1.9541 -3.3131 19 17 0.7478 0.3505 -2.5226 20 6 3.4546 0.2877 -2.5735 21 6 4.7936 0.7551 -3.0830 22 8 3.3026 -0.8639 -2.2437 23 1 -0.3633 0.6700 -0.7793 24 1 -0.3634 -1.0098 -0.1907 25 1 -0.3634 0.3399 0.9698 26 1 1.8933 -0.5139 0.8901 27 1 1.8933 -0.5140 -0.8900 28 1 3.8400 2.9650 4.4139 29 1 2.6695 4.0226 2.1135 30 1 3.3203 5.0629 -0.0145 31 1 3.1530 3.7939 -2.1153 32 1 5.3986 1.1053 -2.2466 33 1 5.3026 -0.0717 -3.5785 34 1 4.6483 1.5698 -3.7925 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396051824.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:58 Heat of formation + Delta-G solvation = -41.037649 kcal Electronic energy + Delta-G solvation = -18466.244063 eV Core-core repulsion = 15582.229744 eV Total energy + Delta-G solvation = -2884.014319 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.99227 -39.48406 -36.97058 -35.61837 -34.58668 -33.23396 -31.03512 -30.23514 -27.56271 -27.15347 -24.32503 -22.55584 -21.39869 -20.35602 -18.88431 -17.54857 -17.22412 -16.67505 -16.39196 -16.02764 -15.76110 -15.14407 -14.85062 -14.39341 -14.04302 -13.85926 -13.65698 -13.17486 -13.14001 -12.96915 -12.86123 -12.79682 -12.54116 -12.28370 -12.20630 -12.10323 -11.71189 -11.28357 -11.17762 -10.95265 -10.50144 -10.37600 -9.10218 -9.08422 -8.48828 -6.33032 0.55357 1.00270 1.08135 1.35105 1.38884 1.44776 1.51708 2.21791 2.75935 3.09680 3.71560 3.79110 4.03243 4.11227 4.38186 4.47725 4.63626 4.66281 4.69498 4.81048 4.83904 5.11104 5.14401 5.20177 5.21512 5.29834 5.40333 5.51398 5.62746 5.78410 6.02159 6.14778 6.20051 6.40988 6.45185 6.74833 7.02423 7.07325 8.43599 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022219 B = 0.007429 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.870601 B = 3768.223607 C = 4211.049112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.083 4.083 3 C -0.156 4.156 4 C 0.072 3.928 5 C -0.488 4.488 6 H 0.069 0.931 7 C 0.029 3.971 8 N -0.842 5.842 9 Si 0.973 3.027 10 H -0.268 1.268 11 H -0.268 1.268 12 H -0.261 1.261 13 C -0.167 4.167 14 C -0.123 4.123 15 C -0.190 4.190 16 C -0.093 4.093 17 C -0.005 4.005 18 H 0.161 0.839 19 Cl -0.156 7.156 20 C 0.355 3.645 21 C -0.189 4.189 22 O -0.472 6.472 23 H 0.067 0.933 24 H 0.049 0.951 25 H 0.030 0.970 26 H 0.026 0.974 27 H 0.093 0.907 28 H 0.282 0.718 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.141 0.859 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.328 0.128 -10.982 11.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.119 4.119 3 C -0.158 4.158 4 C 0.070 3.930 5 C -0.519 4.519 6 H 0.088 0.912 7 C -0.182 4.182 8 N -0.470 5.470 9 Si 0.795 3.205 10 H -0.193 1.193 11 H -0.192 1.192 12 H -0.186 1.186 13 C -0.187 4.187 14 C -0.141 4.141 15 C -0.209 4.209 16 C -0.094 4.094 17 C -0.049 4.049 18 H 0.179 0.821 19 Cl -0.128 7.128 20 C 0.232 3.768 21 C -0.246 4.246 22 O -0.346 6.346 23 H 0.086 0.914 24 H 0.068 0.932 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.124 0.876 30 H 0.135 0.865 31 H 0.158 0.842 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.291 -0.447 -10.655 10.742 hybrid contribution -0.287 -0.218 1.359 1.406 sum 1.004 -0.665 -9.297 9.374 Atomic orbital electron populations 1.21958 0.95470 1.00788 1.00607 1.20727 0.96063 0.93696 1.01460 1.20032 1.06617 0.95950 0.93158 1.17802 0.91281 0.91485 0.92457 1.19683 1.16650 1.22966 0.92589 0.91241 1.26586 0.93679 0.94630 1.03326 1.69807 1.19010 1.27950 1.30252 0.85377 0.79284 0.79015 0.76803 1.19304 1.19212 1.18593 1.21616 1.04313 0.95324 0.97431 1.21004 1.00903 0.99375 0.92820 1.20656 1.08496 0.93574 0.98137 1.18927 1.04435 0.94932 0.91099 1.23765 0.84584 0.96041 1.00508 0.82142 1.98706 1.36881 1.78706 1.98549 1.25201 0.91956 0.87588 0.72067 1.22250 0.92749 1.05437 1.04146 1.90375 1.84895 1.21818 1.37533 0.91435 0.93209 0.95110 0.95515 0.88950 0.90789 0.87612 0.86459 0.84162 0.88230 0.88051 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.39 8.48 71.98 0.61 -4.78 16 2 C -0.08 -3.72 4.55 29.85 0.14 -3.59 16 3 C -0.16 -7.32 5.02 -19.41 -0.10 -7.42 16 4 C 0.07 3.79 5.55 -21.29 -0.12 3.68 16 5 C -0.49 -26.66 7.95 23.46 0.19 -26.48 16 6 H 0.07 3.77 5.96 -2.91 -0.02 3.75 16 7 C 0.03 1.52 5.40 85.26 0.46 1.98 16 8 N -0.84 -44.67 10.62 21.83 0.23 -44.44 16 9 Si 0.97 40.44 29.56 68.60 2.03 42.47 16 10 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 11 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 12 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 13 C -0.17 -8.49 8.66 22.73 0.20 -8.29 16 14 C -0.12 -5.13 10.02 22.22 0.22 -4.91 16 15 C -0.19 -6.83 9.67 22.46 0.22 -6.61 16 16 C -0.09 -3.60 4.85 -19.92 -0.10 -3.69 16 17 C -0.01 -0.15 3.09 29.10 0.09 -0.06 16 18 H 0.16 3.38 7.93 -2.39 -0.02 3.36 16 19 Cl -0.16 -5.17 20.88 -2.72 -0.06 -5.23 16 20 C 0.36 10.52 6.16 29.10 0.18 10.70 16 21 C -0.19 -3.67 10.25 71.23 0.73 -2.94 16 22 O -0.47 -17.47 14.87 -1.43 -0.02 -17.49 16 23 H 0.07 2.66 5.55 -2.38 -0.01 2.65 16 24 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.03 1.32 6.80 -2.39 -0.02 1.30 16 26 H 0.03 1.32 7.32 -2.38 -0.02 1.30 16 27 H 0.09 3.96 2.86 -2.38 -0.01 3.96 16 28 H 0.28 13.74 8.30 -92.71 -0.77 12.97 16 29 H 0.11 5.77 6.15 -2.91 -0.02 5.75 16 30 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 31 H 0.14 3.71 8.00 -2.91 -0.02 3.68 16 32 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.12 1.46 8.10 -2.38 -0.02 1.44 16 Total: -1.00 -63.24 286.38 6.02 -57.23 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 1.12 Total: 19.89 kcal Atomic # 6 Polarization: -55.14 SS G_CDS: 2.72 Total: -52.42 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.23 Total: -44.44 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.02 Total: -17.49 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Atomic # 17 Polarization: -5.17 SS G_CDS: -0.06 Total: -5.23 kcal Total: -63.24 6.02 -57.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396051824.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.188 kcal (2) G-P(sol) polarization free energy of solvation -63.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds