Wall clock time and date at job start Mon Mar 30 2020 07:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47312 * 2 1 4 4 C 1.40732 * 120.13011 * 89.99466 * 3 2 1 5 5 C 1.41399 * 120.24142 * 0.02562 * 4 3 2 6 6 H 1.07998 * 119.99785 * 333.85184 * 5 4 3 7 7 C 1.39949 * 120.00036 * 153.85763 * 5 4 3 8 8 N 1.30830 * 119.99778 * 343.83639 * 7 5 4 9 9 Si 1.86794 * 119.99889 * 163.84392 * 7 5 4 10 10 H 1.48499 * 109.47495 * 60.00065 * 9 7 5 11 11 H 1.48506 * 109.46966 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47040 * 299.99389 * 9 7 5 13 13 C 1.40691 * 119.51405 * 179.97438 * 4 3 2 14 14 C 1.37638 * 119.74652 * 0.02562 * 13 4 3 15 15 C 1.38611 * 120.24585 * 0.02562 * 14 13 4 16 16 C 1.37596 * 120.12549 * 269.72104 * 3 2 1 17 17 C 1.50693 * 119.87811 * 0.02562 * 16 3 2 18 18 H 1.09007 * 109.47244 * 35.00071 * 17 16 3 19 19 Cl 1.80301 * 109.47507 * 155.00011 * 17 16 3 20 20 C 1.50701 * 109.47368 * 275.00155 * 17 16 3 21 21 C 1.50699 * 119.99967 * 274.99762 * 20 17 16 22 22 O 1.20754 * 120.00163 * 94.99804 * 20 17 16 23 23 H 1.09001 * 109.47018 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46819 * 300.00334 * 1 2 3 25 25 H 1.09004 * 109.46846 * 60.00418 * 1 2 3 26 26 H 1.09007 * 109.47033 * 120.00079 * 2 1 3 27 27 H 1.09005 * 109.47394 * 239.99559 * 2 1 3 28 28 H 0.96999 * 119.99380 * 179.97438 * 8 7 5 29 29 H 1.08007 * 120.13118 * 180.02562 * 13 4 3 30 30 H 1.08004 * 119.88126 * 179.97438 * 14 13 4 31 31 H 1.08007 * 119.74802 * 179.97438 * 15 14 13 32 32 H 1.09000 * 109.47215 * 89.99835 * 21 20 17 33 33 H 1.08995 * 109.47064 * 209.99831 * 21 20 17 34 34 H 1.09004 * 109.47042 * 329.99928 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2678 2.0868 1.2172 5 6 2.0351 1.4276 2.4463 6 1 1.3146 0.6250 2.5006 7 6 2.7385 1.8153 3.5924 8 7 3.8166 2.5482 3.4815 9 14 2.1383 1.2862 5.2802 10 1 2.1183 -0.1967 5.3561 11 1 3.0519 1.8223 6.3210 12 1 0.7678 1.8120 5.5055 13 6 2.7373 3.4130 1.2021 14 6 2.9607 4.0446 -0.0002 15 6 2.7244 3.3793 -1.1930 16 6 2.2681 2.0699 -1.1901 17 6 2.0223 1.3577 -2.4952 18 1 1.1622 0.6960 -2.3917 19 17 1.6958 2.5699 -3.7893 20 6 3.2386 0.5469 -2.8618 21 6 4.3828 1.1954 -3.5974 22 8 3.2963 -0.6225 -2.5661 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 4.3039 2.8172 4.2759 29 1 2.9217 3.9335 2.1303 30 1 3.3207 5.0628 -0.0144 31 1 2.9021 3.8828 -2.1319 32 1 5.0946 1.6001 -2.8779 33 1 4.8800 0.4536 -4.2223 34 1 4.0015 2.0017 -4.2241 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396051827.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:02 Heat of formation + Delta-G solvation = -46.534505 kcal Electronic energy + Delta-G solvation = -18238.708810 eV Core-core repulsion = 15354.456130 eV Total energy + Delta-G solvation = -2884.252681 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -39.55679 -37.91830 -35.81563 -33.90596 -33.12503 -31.49474 -29.67803 -28.67637 -26.27880 -25.37722 -22.68977 -20.89505 -19.81209 -18.92647 -17.13436 -15.81595 -15.79634 -15.41512 -14.94690 -14.53592 -14.20834 -13.64103 -12.84539 -12.72974 -12.68650 -12.43716 -12.17882 -12.05569 -11.86596 -11.52853 -11.32650 -11.19002 -10.99024 -10.76989 -10.62971 -10.42966 -10.30761 -10.08624 -9.54673 -9.41321 -9.26737 -9.16163 -7.42937 -7.39109 -6.80950 -4.42018 1.81526 2.55884 2.72752 2.76903 3.03640 3.06264 3.16489 3.89184 4.20271 4.55925 5.09022 5.23386 5.42505 5.56389 5.65573 5.72555 5.88734 5.94332 6.12490 6.26622 6.32935 6.43263 6.55095 6.72179 6.86280 6.96936 7.09520 7.13435 7.28197 7.47259 7.57032 7.76065 7.92849 7.96441 8.16575 8.53414 8.81687 8.86769 10.13875 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.025360 B = 0.006479 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.850538 B = 4320.944839 C = 4651.281799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.079 4.079 3 C -0.164 4.164 4 C 0.114 3.886 5 C -0.458 4.458 6 H 0.081 0.919 7 C 0.076 3.924 8 N -0.795 5.795 9 Si 0.907 3.093 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.264 1.264 13 C -0.149 4.149 14 C -0.111 4.111 15 C -0.212 4.212 16 C -0.084 4.084 17 C 0.007 3.993 18 H 0.122 0.878 19 Cl -0.166 7.166 20 C 0.371 3.629 21 C -0.206 4.206 22 O -0.445 6.445 23 H 0.041 0.959 24 H 0.057 0.943 25 H 0.042 0.958 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.281 0.719 29 H 0.119 0.881 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.414 -0.354 -7.584 7.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 C -0.166 4.166 4 C 0.112 3.888 5 C -0.487 4.487 6 H 0.099 0.901 7 C -0.142 4.142 8 N -0.420 5.420 9 Si 0.731 3.269 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.188 1.188 13 C -0.169 4.169 14 C -0.129 4.129 15 C -0.231 4.231 16 C -0.084 4.084 17 C -0.037 4.037 18 H 0.140 0.860 19 Cl -0.139 7.139 20 C 0.246 3.754 21 C -0.263 4.263 22 O -0.319 6.319 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.137 0.863 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.102 0.898 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.210 -0.795 -7.379 7.520 hybrid contribution -0.173 0.087 0.803 0.826 sum -1.383 -0.707 -6.576 6.757 Atomic orbital electron populations 1.21712 0.96737 0.99859 1.01504 1.20385 0.94569 0.94561 1.02141 1.19488 1.09745 0.95443 0.91938 1.17379 0.89132 0.90989 0.91343 1.19537 1.20380 1.16485 0.92293 0.90067 1.25903 0.93394 0.93515 1.01373 1.69800 1.11969 1.28344 1.31908 0.86386 0.79792 0.79966 0.80747 1.18975 1.20354 1.18808 1.21420 1.03937 0.94903 0.96609 1.20663 1.01104 0.98080 0.93096 1.20326 1.10835 0.94816 0.97143 1.18563 1.05418 0.94953 0.89500 1.23688 0.99712 0.91352 0.88966 0.85985 1.98672 1.95929 1.63097 1.56230 1.24527 0.88340 0.87798 0.74725 1.22302 0.98415 1.03323 1.02290 1.90402 1.80147 1.17630 1.43685 0.93954 0.92360 0.93890 0.91107 0.92220 0.90798 0.86314 0.89081 0.88100 0.88023 0.89776 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.76 37.16 0.36 -2.17 16 2 C -0.08 -1.64 4.77 -27.89 -0.13 -1.77 16 3 C -0.16 -3.75 5.19 -103.92 -0.54 -4.29 16 4 C 0.11 2.87 5.56 -106.83 -0.59 2.28 16 5 C -0.46 -11.55 8.12 -37.74 -0.31 -11.85 16 6 H 0.08 1.98 6.61 -52.49 -0.35 1.63 16 7 C 0.08 1.84 5.16 -17.34 -0.09 1.75 16 8 N -0.79 -19.93 10.97 55.55 0.61 -19.32 16 9 Si 0.91 18.30 29.59 -169.99 -5.03 13.27 16 10 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 11 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 12 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 13 C -0.15 -3.70 8.68 -38.88 -0.34 -4.03 16 14 C -0.11 -2.46 10.02 -39.66 -0.40 -2.86 16 15 C -0.21 -4.39 9.17 -39.29 -0.36 -4.75 16 16 C -0.08 -1.74 5.00 -104.70 -0.52 -2.26 16 17 C 0.01 0.12 2.72 -29.04 -0.08 0.04 16 18 H 0.12 2.10 6.06 -51.92 -0.31 1.78 16 19 Cl -0.17 -2.52 24.80 -51.86 -1.29 -3.81 16 20 C 0.37 6.29 6.27 -29.03 -0.18 6.11 16 21 C -0.21 -2.78 10.11 36.01 0.36 -2.42 16 22 O -0.45 -8.60 15.98 6.00 0.10 -8.50 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 1.10 7.87 -51.93 -0.41 0.69 16 25 H 0.04 0.73 7.33 -51.93 -0.38 0.35 16 26 H 0.07 1.55 6.78 -51.93 -0.35 1.20 16 27 H 0.06 1.20 4.76 -51.93 -0.25 0.95 16 28 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 29 H 0.12 3.05 6.22 -52.48 -0.33 2.72 16 30 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 31 H 0.10 1.88 6.59 -52.48 -0.35 1.53 16 32 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 1.14 6.30 -51.93 -0.33 0.81 16 LS Contribution 292.51 15.07 4.41 4.41 Total: -1.00 -26.26 292.51 -7.89 -34.15 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -3.88 Total: 6.04 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: -2.82 Total: -26.24 kcal Atomic # 7 Polarization: -19.93 SS G_CDS: 0.61 Total: -19.32 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.10 Total: -8.50 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Atomic # 17 Polarization: -2.52 SS G_CDS: -1.29 Total: -3.81 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -26.26 -7.89 -34.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396051827.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.382 kcal (2) G-P(sol) polarization free energy of solvation -26.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds