Wall clock time and date at job start Mon Mar 30 2020 07:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47312 * 2 1 4 4 C 1.40732 * 120.13011 * 89.99466 * 3 2 1 5 5 C 1.41399 * 120.24142 * 0.02562 * 4 3 2 6 6 H 1.07998 * 119.99785 * 333.85184 * 5 4 3 7 7 C 1.39949 * 120.00036 * 153.85763 * 5 4 3 8 8 N 1.30830 * 119.99778 * 343.83639 * 7 5 4 9 9 Si 1.86794 * 119.99889 * 163.84392 * 7 5 4 10 10 H 1.48499 * 109.47495 * 60.00065 * 9 7 5 11 11 H 1.48506 * 109.46966 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47040 * 299.99389 * 9 7 5 13 13 C 1.40691 * 119.51405 * 179.97438 * 4 3 2 14 14 C 1.37638 * 119.74652 * 0.02562 * 13 4 3 15 15 C 1.38611 * 120.24585 * 0.02562 * 14 13 4 16 16 C 1.37596 * 120.12549 * 269.72104 * 3 2 1 17 17 C 1.50693 * 119.87811 * 0.02562 * 16 3 2 18 18 H 1.09007 * 109.47244 * 35.00071 * 17 16 3 19 19 Cl 1.80301 * 109.47507 * 155.00011 * 17 16 3 20 20 C 1.50701 * 109.47368 * 275.00155 * 17 16 3 21 21 C 1.50699 * 119.99967 * 274.99762 * 20 17 16 22 22 O 1.20754 * 120.00163 * 94.99804 * 20 17 16 23 23 H 1.09001 * 109.47018 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46819 * 300.00334 * 1 2 3 25 25 H 1.09004 * 109.46846 * 60.00418 * 1 2 3 26 26 H 1.09007 * 109.47033 * 120.00079 * 2 1 3 27 27 H 1.09005 * 109.47394 * 239.99559 * 2 1 3 28 28 H 0.96999 * 119.99380 * 179.97438 * 8 7 5 29 29 H 1.08007 * 120.13118 * 180.02562 * 13 4 3 30 30 H 1.08004 * 119.88126 * 179.97438 * 14 13 4 31 31 H 1.08007 * 119.74802 * 179.97438 * 15 14 13 32 32 H 1.09000 * 109.47215 * 89.99835 * 21 20 17 33 33 H 1.08995 * 109.47064 * 209.99831 * 21 20 17 34 34 H 1.09004 * 109.47042 * 329.99928 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2678 2.0868 1.2172 5 6 2.0351 1.4276 2.4463 6 1 1.3146 0.6250 2.5006 7 6 2.7385 1.8153 3.5924 8 7 3.8166 2.5482 3.4815 9 14 2.1383 1.2862 5.2802 10 1 2.1183 -0.1967 5.3561 11 1 3.0519 1.8223 6.3210 12 1 0.7678 1.8120 5.5055 13 6 2.7373 3.4130 1.2021 14 6 2.9607 4.0446 -0.0002 15 6 2.7244 3.3793 -1.1930 16 6 2.2681 2.0699 -1.1901 17 6 2.0223 1.3577 -2.4952 18 1 1.1622 0.6960 -2.3917 19 17 1.6958 2.5699 -3.7893 20 6 3.2386 0.5469 -2.8618 21 6 4.3828 1.1954 -3.5974 22 8 3.2963 -0.6225 -2.5661 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 4.3039 2.8172 4.2759 29 1 2.9217 3.9335 2.1303 30 1 3.3207 5.0628 -0.0144 31 1 2.9021 3.8828 -2.1319 32 1 5.0946 1.6001 -2.8779 33 1 4.8800 0.4536 -4.2223 34 1 4.0015 2.0017 -4.2241 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396051827.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:01 Heat of formation + Delta-G solvation = -58.147905 kcal Electronic energy + Delta-G solvation = -18239.212405 eV Core-core repulsion = 15354.456130 eV Total energy + Delta-G solvation = -2884.756275 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.02144 -39.56355 -37.17749 -35.65818 -34.79090 -33.04411 -31.10356 -30.26891 -27.79526 -27.17865 -24.32231 -22.58863 -21.40325 -20.46621 -18.89047 -17.40602 -17.18388 -16.98975 -16.46751 -16.14463 -15.76848 -15.19147 -14.47153 -14.27583 -14.25526 -13.92769 -13.75472 -13.30440 -13.21004 -13.07300 -12.94947 -12.82373 -12.51960 -12.33873 -12.22610 -11.94130 -11.92012 -11.55814 -11.25189 -11.04682 -10.92861 -10.71915 -9.23133 -9.12682 -8.60857 -6.30220 0.42308 0.99203 1.04402 1.20815 1.37820 1.47364 1.52868 2.20639 2.68899 2.97514 3.61601 3.74177 3.89312 4.18833 4.30448 4.35478 4.57244 4.60474 4.66789 4.71605 4.81098 4.95736 5.08007 5.12143 5.17118 5.25189 5.35165 5.44903 5.53305 5.71063 5.99009 6.12694 6.15534 6.26469 6.36575 6.70073 6.97392 7.04076 8.35725 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.025360 B = 0.006479 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.850538 B = 4320.944839 C = 4651.281799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.075 4.075 3 C -0.177 4.177 4 C 0.084 3.916 5 C -0.488 4.488 6 H 0.078 0.922 7 C 0.036 3.964 8 N -0.828 5.828 9 Si 0.973 3.027 10 H -0.262 1.262 11 H -0.270 1.270 12 H -0.261 1.261 13 C -0.177 4.177 14 C -0.116 4.116 15 C -0.204 4.204 16 C -0.083 4.083 17 C 0.006 3.994 18 H 0.124 0.876 19 Cl -0.140 7.140 20 C 0.370 3.630 21 C -0.202 4.202 22 O -0.473 6.473 23 H 0.066 0.934 24 H 0.043 0.957 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.286 0.714 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.128 0.872 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.711 -0.352 -9.106 9.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.113 4.113 3 C -0.179 4.179 4 C 0.082 3.918 5 C -0.518 4.518 6 H 0.096 0.904 7 C -0.179 4.179 8 N -0.454 5.454 9 Si 0.794 3.206 10 H -0.187 1.187 11 H -0.195 1.195 12 H -0.185 1.185 13 C -0.197 4.197 14 C -0.134 4.134 15 C -0.223 4.223 16 C -0.083 4.083 17 C -0.039 4.039 18 H 0.142 0.858 19 Cl -0.113 7.113 20 C 0.247 3.753 21 C -0.259 4.259 22 O -0.348 6.348 23 H 0.085 0.915 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.131 0.869 31 H 0.146 0.854 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.509 -0.779 -8.921 9.081 hybrid contribution -0.078 0.142 1.095 1.107 sum -1.587 -0.637 -7.826 8.011 Atomic orbital electron populations 1.21638 0.94648 1.01455 1.01319 1.20353 0.96373 0.93243 1.01294 1.19806 1.09527 0.96453 0.92109 1.17714 0.90112 0.91557 0.92454 1.19737 1.21301 1.17308 0.93435 0.90363 1.26663 0.93167 0.93421 1.04619 1.69862 1.12947 1.29620 1.32984 0.85383 0.79279 0.79517 0.76381 1.18674 1.19454 1.18521 1.21385 1.06056 0.95275 0.96959 1.20941 1.00548 0.99145 0.92769 1.20647 1.09209 0.94778 0.97620 1.18813 1.03946 0.95078 0.90488 1.23543 1.00476 0.91687 0.88175 0.85778 1.98676 1.95834 1.62093 1.54692 1.24935 0.88767 0.87389 0.74242 1.22342 0.97052 1.04145 1.02326 1.90399 1.80517 1.18887 1.45002 0.91491 0.93754 0.92773 0.93200 0.91635 0.90371 0.88243 0.86945 0.85413 0.87883 0.87675 0.87311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 9.76 71.98 0.70 -3.99 16 2 C -0.08 -3.12 4.77 29.85 0.14 -2.98 16 3 C -0.18 -8.14 5.19 -19.41 -0.10 -8.24 16 4 C 0.08 4.34 5.56 -21.29 -0.12 4.22 16 5 C -0.49 -25.54 8.12 23.46 0.19 -25.35 16 6 H 0.08 3.97 6.61 -2.91 -0.02 3.95 16 7 C 0.04 1.78 5.16 85.26 0.44 2.22 16 8 N -0.83 -42.90 10.97 21.83 0.24 -42.66 16 9 Si 0.97 38.26 29.59 68.60 2.03 40.29 16 10 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 11 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 12 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 13 C -0.18 -9.01 8.68 22.73 0.20 -8.81 16 14 C -0.12 -5.08 10.02 22.22 0.22 -4.86 16 15 C -0.20 -8.07 9.17 22.46 0.21 -7.86 16 16 C -0.08 -3.32 5.00 -19.92 -0.10 -3.42 16 17 C 0.01 0.18 2.72 29.10 0.08 0.26 16 18 H 0.12 4.01 6.06 -2.38 -0.01 3.99 16 19 Cl -0.14 -3.80 24.80 -2.72 -0.07 -3.86 16 20 C 0.37 11.76 6.27 29.10 0.18 11.94 16 21 C -0.20 -4.83 10.11 71.24 0.72 -4.11 16 22 O -0.47 -17.62 15.98 -1.43 -0.02 -17.64 16 23 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.04 1.66 7.87 -2.39 -0.02 1.65 16 25 H 0.05 1.76 7.33 -2.39 -0.02 1.74 16 26 H 0.05 2.24 6.78 -2.38 -0.02 2.23 16 27 H 0.07 2.61 4.76 -2.38 -0.01 2.60 16 28 H 0.29 13.54 8.30 -92.71 -0.77 12.77 16 29 H 0.10 5.35 6.22 -2.91 -0.02 5.33 16 30 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 31 H 0.13 4.33 6.59 -2.91 -0.02 4.31 16 32 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.11 2.24 6.30 -2.38 -0.02 2.23 16 Total: -1.00 -57.38 292.51 6.06 -51.31 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 1.12 Total: 23.53 kcal Atomic # 6 Polarization: -53.74 SS G_CDS: 2.76 Total: -50.97 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.24 Total: -42.66 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.02 Total: -17.64 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Atomic # 17 Polarization: -3.80 SS G_CDS: -0.07 Total: -3.86 kcal Total: -57.38 6.06 -51.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396051827.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.834 kcal (2) G-P(sol) polarization free energy of solvation -57.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds