Wall clock time and date at job start Mon Mar 30 2020 07:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50699 * 109.47375 * 2 1 4 4 C 1.37637 * 119.87271 * 352.56413 * 3 2 1 5 5 C 1.40700 * 119.74587 * 179.97438 * 4 3 2 6 6 C 1.41390 * 120.24365 * 179.97438 * 5 4 3 7 7 H 1.07995 * 120.00673 * 326.01128 * 6 5 4 8 8 C 1.39952 * 119.99826 * 146.00783 * 6 5 4 9 9 N 1.30828 * 119.99594 * 356.25628 * 8 6 5 10 10 Si 1.86794 * 120.00297 * 176.25680 * 8 6 5 11 11 H 1.48507 * 109.46918 * 59.99925 * 10 8 6 12 12 H 1.48501 * 109.47396 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47414 * 300.00088 * 10 8 6 14 14 C 1.40733 * 119.50866 * 0.02562 * 5 4 3 15 15 C 1.37599 * 119.74663 * 359.97438 * 14 5 4 16 16 C 1.38606 * 119.87798 * 172.29850 * 3 2 1 17 17 C 1.50701 * 119.75108 * 359.97438 * 16 3 2 18 18 H 1.09003 * 109.47129 * 160.60270 * 17 16 3 19 19 Cl 1.80299 * 109.47162 * 40.60251 * 17 16 3 20 20 C 1.50698 * 109.47062 * 280.60357 * 17 16 3 21 21 C 1.50705 * 120.00115 * 277.12920 * 20 17 16 22 22 O 1.20758 * 120.00137 * 97.12968 * 20 17 16 23 23 H 1.08996 * 109.47208 * 59.03024 * 1 2 3 24 24 H 1.09006 * 109.47621 * 179.02558 * 1 2 3 25 25 H 1.08997 * 109.47719 * 299.02583 * 1 2 3 26 26 H 1.09006 * 109.47078 * 119.99281 * 2 1 3 27 27 H 1.08998 * 109.47238 * 239.99334 * 2 1 3 28 28 H 1.08003 * 120.13123 * 359.97438 * 4 3 2 29 29 H 0.97006 * 119.99804 * 179.97438 * 9 8 6 30 30 H 1.08005 * 120.12354 * 180.02562 * 14 5 4 31 31 H 1.08003 * 119.87413 * 180.02562 * 15 14 5 32 32 H 1.08999 * 109.46905 * 60.00177 * 21 20 17 33 33 H 1.09005 * 109.46865 * 180.02562 * 21 20 17 34 34 H 1.08997 * 109.46794 * 299.99553 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 1.1451 2.4616 -0.1545 5 6 1.6170 3.7871 -0.1535 6 6 0.7149 4.8643 -0.3119 7 1 -0.1549 4.7522 -0.9420 8 6 0.9493 6.0761 0.3480 9 7 1.9620 6.1888 1.1685 10 14 -0.1838 7.5323 0.0573 11 1 -1.5681 7.1694 0.4543 12 1 0.2766 8.6876 0.8688 13 1 -0.1614 7.8975 -1.3820 14 6 2.9936 4.0327 0.0052 15 6 3.8623 2.9767 0.1580 16 6 3.3853 1.6747 0.1611 17 6 4.3460 0.5268 0.3359 18 1 5.3575 0.8612 0.1053 19 17 3.8881 -0.8151 -0.7778 20 6 4.2910 0.0382 1.7604 21 6 5.0892 0.7398 2.8290 22 8 3.6073 -0.9154 2.0457 23 1 -0.3633 0.5288 -0.8811 24 1 -0.3634 -1.0275 -0.0175 25 1 -0.3634 0.4986 0.8985 26 1 1.8932 -0.5137 0.8901 27 1 1.8932 -0.5139 -0.8899 28 1 0.0907 2.2618 -0.2759 29 1 2.1247 7.0288 1.6256 30 1 3.3666 5.0463 0.0078 31 1 4.9191 3.1628 0.2804 32 1 4.7719 1.7805 2.8952 33 1 4.9243 0.2476 3.7876 34 1 6.1488 0.6981 2.5772 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396052756.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:07 Heat of formation + Delta-G solvation = -36.399303 kcal Electronic energy + Delta-G solvation = -18081.327352 eV Core-core repulsion = 15197.514167 eV Total energy + Delta-G solvation = -2883.813185 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.45868 -37.87294 -35.53842 -34.21009 -32.93325 -31.63460 -29.77061 -28.13375 -27.17084 -24.56874 -23.18979 -20.65245 -19.78048 -19.11046 -17.03351 -15.91879 -15.50983 -15.43820 -15.12482 -14.20890 -14.03578 -13.80494 -13.43216 -12.86998 -12.55544 -12.32309 -12.21427 -11.96473 -11.74222 -11.69649 -11.36448 -11.21285 -10.95459 -10.74185 -10.68009 -10.39499 -10.27571 -9.80604 -9.54779 -9.38374 -9.11359 -8.89996 -7.51949 -7.21608 -6.77987 -4.51085 1.97697 2.48728 2.77344 2.94851 3.02339 3.05194 3.11592 3.88007 4.29239 4.63192 5.16321 5.25720 5.44960 5.49045 5.57713 5.67946 5.79515 5.94563 6.00101 6.09952 6.22935 6.46349 6.60515 6.81481 6.84733 6.88582 6.99182 7.13335 7.24694 7.52490 7.69181 7.70472 7.90671 7.96330 8.18533 8.52294 8.79170 8.83568 10.15452 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026245 B = 0.006007 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.628076 B = 4659.841990 C = 5138.566095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.027 4.027 4 C -0.217 4.217 5 C 0.121 3.879 6 C -0.461 4.461 7 H 0.078 0.922 8 C 0.073 3.927 9 N -0.804 5.804 10 Si 0.914 3.086 11 H -0.265 1.265 12 H -0.278 1.278 13 H -0.264 1.264 14 C -0.158 4.158 15 C -0.084 4.084 16 C -0.233 4.233 17 C 0.024 3.976 18 H 0.112 0.888 19 Cl -0.167 7.167 20 C 0.357 3.643 21 C -0.198 4.198 22 O -0.444 6.444 23 H 0.053 0.947 24 H 0.041 0.959 25 H 0.050 0.950 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.281 0.719 30 H 0.122 0.878 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.922 -5.125 0.543 7.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.027 4.027 4 C -0.236 4.236 5 C 0.119 3.881 6 C -0.491 4.491 7 H 0.096 0.904 8 C -0.144 4.144 9 N -0.430 5.430 10 Si 0.739 3.261 11 H -0.190 1.190 12 H -0.203 1.203 13 H -0.189 1.189 14 C -0.177 4.177 15 C -0.103 4.103 16 C -0.235 4.235 17 C -0.020 4.020 18 H 0.130 0.870 19 Cl -0.140 7.140 20 C 0.232 3.768 21 C -0.255 4.255 22 O -0.317 6.317 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.121 0.879 29 H 0.091 0.909 30 H 0.140 0.860 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.631 -5.565 0.779 7.282 hybrid contribution -0.415 0.904 -0.072 0.998 sum 4.216 -4.660 0.707 6.324 Atomic orbital electron populations 1.21835 0.97132 0.99889 1.01625 1.21299 0.94767 0.94844 1.03726 1.19268 0.92134 0.94294 0.96984 1.21140 0.97818 0.92338 1.12351 1.17731 0.92212 0.91654 0.86516 1.19589 1.08235 0.95739 1.25507 0.90435 1.25893 0.95440 0.99676 0.93370 1.69749 1.25776 1.26870 1.20621 0.86268 0.80751 0.79677 0.79442 1.19010 1.20307 1.18881 1.21329 0.92974 0.97758 1.05656 1.20452 0.97645 0.91761 1.00456 1.18363 0.92365 0.90955 1.21809 1.23209 1.01138 0.88671 0.88959 0.86987 1.98657 1.93488 1.54236 1.67650 1.24739 0.78723 0.82162 0.91170 1.22241 1.01134 1.03682 0.98483 1.90364 1.33041 1.24317 1.83929 0.92798 0.94003 0.93109 0.90407 0.89544 0.87867 0.90851 0.85982 0.88965 0.88084 0.89928 0.89164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.60 37.15 0.32 -2.32 16 2 C -0.11 -2.15 4.33 -27.89 -0.12 -2.27 16 3 C -0.03 -0.58 5.71 -104.71 -0.60 -1.17 16 4 C -0.22 -5.15 8.75 -38.87 -0.34 -5.49 16 5 C 0.12 3.08 5.52 -106.83 -0.59 2.49 16 6 C -0.46 -11.78 9.05 -37.74 -0.34 -12.12 16 7 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 8 C 0.07 1.76 5.34 -17.34 -0.09 1.67 16 9 N -0.80 -19.92 10.86 55.55 0.60 -19.32 16 10 Si 0.91 18.24 29.56 -169.99 -5.03 13.21 16 11 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 12 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 13 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 14 C -0.16 -3.81 8.64 -38.87 -0.34 -4.14 16 15 C -0.08 -1.76 9.64 -39.66 -0.38 -2.15 16 16 C -0.23 -4.72 4.89 -104.33 -0.51 -5.23 16 17 C 0.02 0.41 3.09 -29.04 -0.09 0.32 16 18 H 0.11 1.56 7.98 -51.93 -0.41 1.14 16 19 Cl -0.17 -2.88 23.13 -51.86 -1.20 -4.08 16 20 C 0.36 5.79 6.17 -29.03 -0.18 5.61 16 21 C -0.20 -2.45 10.26 36.01 0.37 -2.08 16 22 O -0.44 -8.34 14.74 6.00 0.09 -8.25 16 23 H 0.05 0.95 7.09 -51.93 -0.37 0.58 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.93 7.90 -51.93 -0.41 0.52 16 26 H 0.08 1.59 5.11 -51.93 -0.27 1.32 16 27 H 0.09 1.66 5.32 -51.93 -0.28 1.38 16 28 H 0.10 2.36 5.89 -52.48 -0.31 2.05 16 29 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 30 H 0.12 3.06 6.38 -52.48 -0.33 2.72 16 31 H 0.09 1.64 8.02 -52.48 -0.42 1.21 16 32 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 291.97 15.07 4.40 4.40 Total: -1.00 -27.01 291.97 -8.06 -35.07 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -4.04 Total: 5.85 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -2.89 Total: -26.88 kcal Atomic # 7 Polarization: -19.92 SS G_CDS: 0.60 Total: -19.32 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.09 Total: -8.25 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Atomic # 17 Polarization: -2.88 SS G_CDS: -1.20 Total: -4.08 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.01 -8.06 -35.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396052756.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.333 kcal (2) G-P(sol) polarization free energy of solvation -27.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds