Wall clock time and date at job start Mon Mar 30 2020 07:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50699 * 109.47375 * 2 1 4 4 C 1.37637 * 119.87271 * 352.56413 * 3 2 1 5 5 C 1.40700 * 119.74587 * 179.97438 * 4 3 2 6 6 C 1.41390 * 120.24365 * 179.97438 * 5 4 3 7 7 H 1.07995 * 120.00673 * 326.01128 * 6 5 4 8 8 C 1.39952 * 119.99826 * 146.00783 * 6 5 4 9 9 N 1.30828 * 119.99594 * 356.25628 * 8 6 5 10 10 Si 1.86794 * 120.00297 * 176.25680 * 8 6 5 11 11 H 1.48507 * 109.46918 * 59.99925 * 10 8 6 12 12 H 1.48501 * 109.47396 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47414 * 300.00088 * 10 8 6 14 14 C 1.40733 * 119.50866 * 0.02562 * 5 4 3 15 15 C 1.37599 * 119.74663 * 359.97438 * 14 5 4 16 16 C 1.38606 * 119.87798 * 172.29850 * 3 2 1 17 17 C 1.50701 * 119.75108 * 359.97438 * 16 3 2 18 18 H 1.09003 * 109.47129 * 160.60270 * 17 16 3 19 19 Cl 1.80299 * 109.47162 * 40.60251 * 17 16 3 20 20 C 1.50698 * 109.47062 * 280.60357 * 17 16 3 21 21 C 1.50705 * 120.00115 * 277.12920 * 20 17 16 22 22 O 1.20758 * 120.00137 * 97.12968 * 20 17 16 23 23 H 1.08996 * 109.47208 * 59.03024 * 1 2 3 24 24 H 1.09006 * 109.47621 * 179.02558 * 1 2 3 25 25 H 1.08997 * 109.47719 * 299.02583 * 1 2 3 26 26 H 1.09006 * 109.47078 * 119.99281 * 2 1 3 27 27 H 1.08998 * 109.47238 * 239.99334 * 2 1 3 28 28 H 1.08003 * 120.13123 * 359.97438 * 4 3 2 29 29 H 0.97006 * 119.99804 * 179.97438 * 9 8 6 30 30 H 1.08005 * 120.12354 * 180.02562 * 14 5 4 31 31 H 1.08003 * 119.87413 * 180.02562 * 15 14 5 32 32 H 1.08999 * 109.46905 * 60.00177 * 21 20 17 33 33 H 1.09005 * 109.46865 * 180.02562 * 21 20 17 34 34 H 1.08997 * 109.46794 * 299.99553 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 1.1451 2.4616 -0.1545 5 6 1.6170 3.7871 -0.1535 6 6 0.7149 4.8643 -0.3119 7 1 -0.1549 4.7522 -0.9420 8 6 0.9493 6.0761 0.3480 9 7 1.9620 6.1888 1.1685 10 14 -0.1838 7.5323 0.0573 11 1 -1.5681 7.1694 0.4543 12 1 0.2766 8.6876 0.8688 13 1 -0.1614 7.8975 -1.3820 14 6 2.9936 4.0327 0.0052 15 6 3.8623 2.9767 0.1580 16 6 3.3853 1.6747 0.1611 17 6 4.3460 0.5268 0.3359 18 1 5.3575 0.8612 0.1053 19 17 3.8881 -0.8151 -0.7778 20 6 4.2910 0.0382 1.7604 21 6 5.0892 0.7398 2.8290 22 8 3.6073 -0.9154 2.0457 23 1 -0.3633 0.5288 -0.8811 24 1 -0.3634 -1.0275 -0.0175 25 1 -0.3634 0.4986 0.8985 26 1 1.8932 -0.5137 0.8901 27 1 1.8932 -0.5139 -0.8899 28 1 0.0907 2.2618 -0.2759 29 1 2.1247 7.0288 1.6256 30 1 3.3666 5.0463 0.0078 31 1 4.9191 3.1628 0.2804 32 1 4.7719 1.7805 2.8952 33 1 4.9243 0.2476 3.7876 34 1 6.1488 0.6981 2.5772 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396052756.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:06 Heat of formation + Delta-G solvation = -48.838056 kcal Electronic energy + Delta-G solvation = -18081.866737 eV Core-core repulsion = 15197.514167 eV Total energy + Delta-G solvation = -2884.352570 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.88552 -39.48745 -36.96705 -35.91258 -34.53623 -33.22215 -31.12846 -29.73629 -28.74217 -26.21282 -24.83774 -22.29892 -21.43960 -20.50096 -18.84619 -17.40363 -16.99988 -16.93201 -16.55902 -15.71816 -15.56460 -15.39335 -14.95180 -14.48019 -14.15784 -13.79168 -13.49162 -13.28284 -13.19301 -13.06593 -12.97587 -12.82505 -12.54631 -12.33645 -12.28034 -11.90155 -11.80772 -11.48972 -11.23213 -11.11207 -10.56351 -10.38506 -9.28440 -8.97830 -8.56548 -6.39950 0.56002 1.03711 1.11928 1.33706 1.39071 1.49366 1.53851 2.22015 2.70767 3.14619 3.68653 3.87753 4.07598 4.13202 4.22500 4.38643 4.46816 4.60629 4.63672 4.67466 4.90023 5.02927 5.10652 5.15232 5.18561 5.25147 5.29164 5.41600 5.48254 5.75874 5.92937 6.11005 6.13259 6.39453 6.45746 6.69279 6.95025 7.00637 8.38606 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026245 B = 0.006007 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.628076 B = 4659.841990 C = 5138.566095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C -0.039 4.039 4 C -0.234 4.234 5 C 0.089 3.911 6 C -0.502 4.502 7 H 0.070 0.930 8 C 0.035 3.965 9 N -0.833 5.833 10 Si 0.981 3.019 11 H -0.265 1.265 12 H -0.267 1.267 13 H -0.261 1.261 14 C -0.180 4.180 15 C -0.078 4.078 16 C -0.220 4.220 17 C 0.019 3.981 18 H 0.151 0.849 19 Cl -0.169 7.169 20 C 0.357 3.643 21 C -0.193 4.193 22 O -0.473 6.473 23 H 0.050 0.950 24 H 0.065 0.935 25 H 0.040 0.960 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.286 0.714 30 H 0.107 0.893 31 H 0.130 0.870 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.298 -5.638 0.888 8.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.141 4.141 3 C -0.039 4.039 4 C -0.253 4.253 5 C 0.087 3.913 6 C -0.532 4.532 7 H 0.088 0.912 8 C -0.179 4.179 9 N -0.459 5.459 10 Si 0.802 3.198 11 H -0.190 1.190 12 H -0.191 1.191 13 H -0.185 1.185 14 C -0.199 4.199 15 C -0.096 4.096 16 C -0.222 4.222 17 C -0.024 4.024 18 H 0.168 0.832 19 Cl -0.142 7.142 20 C 0.233 3.767 21 C -0.249 4.249 22 O -0.348 6.348 23 H 0.069 0.931 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.092 0.908 27 H 0.111 0.889 28 H 0.118 0.882 29 H 0.097 0.903 30 H 0.125 0.875 31 H 0.148 0.852 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.020 -6.088 1.122 8.635 hybrid contribution -0.745 0.895 -0.187 1.179 sum 5.275 -5.194 0.935 7.462 Atomic orbital electron populations 1.21801 0.96139 1.01264 1.01018 1.21285 0.95747 0.93362 1.03725 1.19627 0.92884 0.94910 0.96504 1.21250 0.98225 0.92572 1.13262 1.18049 0.93132 0.92367 0.87719 1.19790 1.08864 0.97324 1.27204 0.91167 1.26636 0.96846 1.01717 0.92677 1.69801 1.27091 1.27749 1.21304 0.85262 0.78567 0.76489 0.79450 1.18988 1.19096 1.18519 1.21304 0.93088 0.98092 1.07434 1.20775 0.99133 0.91111 0.98584 1.18699 0.92506 0.92133 1.18850 1.23437 1.01874 0.87392 0.89746 0.83185 1.98659 1.93627 1.54123 1.67818 1.25182 0.78309 0.81795 0.91402 1.22278 1.02670 1.02620 0.97369 1.90365 1.34377 1.25900 1.84156 0.93052 0.91593 0.94119 0.90811 0.88872 0.88212 0.90298 0.87530 0.85170 0.88436 0.89200 0.85328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.12 8.60 71.98 0.62 -4.50 16 2 C -0.10 -4.01 4.33 29.84 0.13 -3.88 16 3 C -0.04 -1.68 5.71 -19.92 -0.11 -1.80 16 4 C -0.23 -11.38 8.75 22.73 0.20 -11.18 16 5 C 0.09 4.70 5.52 -21.29 -0.12 4.58 16 6 C -0.50 -26.72 9.05 23.46 0.21 -26.51 16 7 H 0.07 3.66 7.85 -2.91 -0.02 3.63 16 8 C 0.03 1.72 5.34 85.26 0.46 2.17 16 9 N -0.83 -42.12 10.86 21.83 0.24 -41.88 16 10 Si 0.98 37.94 29.56 68.60 2.03 39.97 16 11 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 12 H -0.27 -9.70 7.11 99.48 0.71 -9.00 16 13 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 14 C -0.18 -8.79 8.64 22.73 0.20 -8.59 16 15 C -0.08 -3.12 9.64 22.22 0.21 -2.91 16 16 C -0.22 -8.52 4.89 -19.68 -0.10 -8.62 16 17 C 0.02 0.59 3.09 29.10 0.09 0.68 16 18 H 0.15 3.45 7.98 -2.39 -0.02 3.43 16 19 Cl -0.17 -5.43 23.13 -2.72 -0.06 -5.50 16 20 C 0.36 10.53 6.17 29.10 0.18 10.71 16 21 C -0.19 -4.04 10.26 71.24 0.73 -3.31 16 22 O -0.47 -16.85 14.74 -1.45 -0.02 -16.88 16 23 H 0.05 1.81 7.09 -2.39 -0.02 1.79 16 24 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 25 H 0.04 1.49 7.90 -2.39 -0.02 1.47 16 26 H 0.07 2.92 5.11 -2.38 -0.01 2.91 16 27 H 0.09 3.45 5.32 -2.39 -0.01 3.44 16 28 H 0.10 4.76 5.89 -2.91 -0.02 4.74 16 29 H 0.29 13.18 8.30 -92.70 -0.77 12.41 16 30 H 0.11 5.48 6.38 -2.91 -0.02 5.46 16 31 H 0.13 4.16 8.02 -2.91 -0.02 4.14 16 32 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.09 1.79 8.12 -2.38 -0.02 1.77 16 34 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -59.92 291.97 5.99 -53.93 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 1.11 Total: 23.50 kcal Atomic # 6 Polarization: -55.84 SS G_CDS: 2.70 Total: -53.14 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.24 Total: -41.88 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.02 Total: -16.88 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Atomic # 17 Polarization: -5.43 SS G_CDS: -0.06 Total: -5.50 kcal Total: -59.92 5.99 -53.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396052756.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.091 kcal (2) G-P(sol) polarization free energy of solvation -59.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds