Wall clock time and date at job start Mon Mar 30 2020 07:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46799 * 2 1 4 4 C 1.37643 * 119.87535 * 266.56991 * 3 2 1 5 5 C 1.40704 * 119.74183 * 180.02562 * 4 3 2 6 6 C 1.41401 * 120.23863 * 179.97438 * 5 4 3 7 7 H 1.07990 * 119.99946 * 29.12056 * 6 5 4 8 8 C 1.39945 * 119.99634 * 209.11107 * 6 5 4 9 9 N 1.30826 * 119.99966 * 12.95043 * 8 6 5 10 10 Si 1.86801 * 119.99796 * 192.94660 * 8 6 5 11 11 H 1.48501 * 109.46926 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47152 * 120.00705 * 10 8 6 13 13 H 1.48500 * 109.46865 * 240.00226 * 10 8 6 14 14 C 1.40732 * 119.51398 * 0.02562 * 5 4 3 15 15 C 1.37602 * 119.74324 * 359.76506 * 14 5 4 16 16 C 1.38609 * 119.87754 * 86.59888 * 3 2 1 17 17 C 1.50703 * 119.74711 * 359.97082 * 16 3 2 18 18 H 1.08992 * 109.47168 * 326.82934 * 17 16 3 19 19 Cl 1.80302 * 109.46809 * 86.82943 * 17 16 3 20 20 C 1.50703 * 109.47045 * 206.82489 * 17 16 3 21 21 C 1.50697 * 120.00516 * 273.53535 * 20 17 16 22 22 O 1.20765 * 119.99588 * 93.53943 * 20 17 16 23 23 H 1.08997 * 109.47181 * 185.27107 * 1 2 3 24 24 H 1.09003 * 109.47152 * 305.27120 * 1 2 3 25 25 H 1.09001 * 109.46972 * 65.27123 * 1 2 3 26 26 H 1.09000 * 109.47169 * 240.00177 * 2 1 3 27 27 H 1.08995 * 109.47406 * 119.99948 * 2 1 3 28 28 H 1.07996 * 120.13069 * 359.97438 * 4 3 2 29 29 H 0.96997 * 119.99755 * 179.97438 * 9 8 6 30 30 H 1.07996 * 120.12859 * 180.02562 * 14 5 4 31 31 H 1.07997 * 119.87370 * 180.22716 * 15 14 5 32 32 H 1.09002 * 109.46649 * 0.02562 * 21 20 17 33 33 H 1.09000 * 109.47269 * 119.99642 * 21 20 17 34 34 H 1.09000 * 109.47418 * 240.00231 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3281 2.0435 -1.1914 5 6 2.7974 3.3700 -1.1881 6 6 3.1050 4.0195 -2.4058 7 1 2.5824 3.7464 -3.3105 8 6 4.0865 5.0165 -2.4385 9 7 4.8918 5.1753 -1.4197 10 14 4.2470 6.1204 -3.9368 11 1 3.2246 5.7393 -4.9442 12 1 4.0412 7.5348 -3.5339 13 1 5.6025 5.9650 -4.5232 14 6 2.9593 4.0450 0.0361 15 6 2.6532 3.4043 1.2147 16 6 2.1952 2.0956 1.1997 17 6 1.8678 1.4031 2.4976 18 1 1.0367 0.7152 2.3428 19 17 3.3101 0.4841 3.0687 20 6 1.4844 2.4297 3.5320 21 6 2.5503 3.0985 4.3613 22 8 0.3229 2.7165 3.6965 23 1 -0.3633 -1.0233 0.0944 24 1 -0.3633 0.5934 0.8390 25 1 -0.3633 0.4299 -0.9334 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.2013 1.5157 -2.1250 29 1 5.5723 5.8661 -1.4425 30 1 3.3184 5.0634 0.0502 31 1 2.7732 3.9215 2.1551 32 1 3.5289 2.7149 4.0728 33 1 2.5187 4.1751 4.1939 34 1 2.3742 2.8894 5.4165 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396052758.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:10 Heat of formation + Delta-G solvation = -51.086595 kcal Electronic energy + Delta-G solvation = -17950.460077 eV Core-core repulsion = 15066.010003 eV Total energy + Delta-G solvation = -2884.450074 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.51679 -37.95138 -35.55074 -34.46058 -32.78304 -31.68115 -29.58888 -28.42704 -27.54738 -24.46287 -22.91145 -21.11736 -19.93567 -19.04043 -17.04183 -15.94009 -15.69997 -15.48121 -15.05055 -14.32490 -13.96240 -13.74305 -13.32678 -13.01081 -12.79501 -12.38097 -12.15437 -11.97921 -11.92626 -11.75074 -11.37984 -11.25904 -11.06965 -10.84567 -10.75780 -10.45799 -10.34659 -10.11154 -9.63672 -9.53135 -9.32142 -9.15693 -7.59125 -7.36332 -6.88390 -4.52974 1.85517 2.34627 2.85333 2.88963 3.00827 3.05783 3.23432 3.83360 4.20559 4.52167 5.06524 5.33407 5.46350 5.49318 5.55769 5.55952 5.68136 5.81864 5.94145 6.05387 6.16071 6.26693 6.27521 6.39882 6.66265 6.78647 6.91796 7.06272 7.19510 7.44364 7.57342 7.63685 7.85716 7.89848 8.11177 8.46855 8.72610 8.78308 10.05703 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022383 B = 0.006140 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.633834 B = 4559.135446 C = 5098.059301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.027 4.027 4 C -0.216 4.216 5 C 0.123 3.877 6 C -0.455 4.455 7 H 0.081 0.919 8 C 0.074 3.926 9 N -0.789 5.789 10 Si 0.911 3.089 11 H -0.260 1.260 12 H -0.271 1.271 13 H -0.273 1.273 14 C -0.160 4.160 15 C -0.086 4.086 16 C -0.223 4.223 17 C 0.021 3.979 18 H 0.116 0.884 19 Cl -0.191 7.191 20 C 0.373 3.627 21 C -0.209 4.209 22 O -0.456 6.456 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.282 0.718 30 H 0.119 0.881 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.148 -4.142 5.204 6.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 C -0.027 4.027 4 C -0.236 4.236 5 C 0.120 3.880 6 C -0.484 4.484 7 H 0.099 0.901 8 C -0.145 4.145 9 N -0.414 5.414 10 Si 0.735 3.265 11 H -0.183 1.183 12 H -0.196 1.196 13 H -0.198 1.198 14 C -0.179 4.179 15 C -0.105 4.105 16 C -0.225 4.225 17 C -0.022 4.022 18 H 0.133 0.867 19 Cl -0.165 7.165 20 C 0.249 3.751 21 C -0.265 4.265 22 O -0.330 6.330 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.093 0.907 30 H 0.137 0.863 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.452 -3.923 5.415 7.122 hybrid contribution 0.489 0.488 -0.651 0.949 sum -1.963 -3.435 4.764 6.193 Atomic orbital electron populations 1.21749 0.95687 1.00533 1.02200 1.20559 0.95363 0.94736 1.01920 1.19053 0.97186 0.93801 0.92664 1.20874 1.11968 0.95481 0.95261 1.17688 0.87067 0.89979 0.93281 1.19705 1.17228 1.15779 0.95673 0.90114 1.25951 0.94288 0.96534 0.97716 1.69801 1.13199 1.28013 1.30382 0.86206 0.79089 0.79796 0.81368 1.18330 1.19626 1.19839 1.21242 1.04959 1.00311 0.91394 1.20600 0.98838 0.93594 0.97468 1.18227 1.18353 0.96219 0.89668 1.23437 0.89162 0.94784 0.94827 0.86664 1.98704 1.49162 1.77753 1.90852 1.24556 0.89796 0.80262 0.80509 1.22390 1.00720 1.02635 1.00799 1.90401 1.22094 1.58291 1.62189 0.93306 0.92824 0.92555 0.91763 0.91763 0.88483 0.90681 0.86289 0.89042 0.88785 0.88816 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.67 37.16 0.36 -1.83 16 2 C -0.09 -1.50 5.36 -27.88 -0.15 -1.65 16 3 C -0.03 -0.55 5.13 -104.70 -0.54 -1.09 16 4 C -0.22 -5.00 9.42 -38.87 -0.37 -5.37 16 5 C 0.12 3.10 5.54 -106.82 -0.59 2.51 16 6 C -0.45 -11.48 9.05 -37.74 -0.34 -11.82 16 7 H 0.08 1.96 7.88 -52.49 -0.41 1.55 16 8 C 0.07 1.76 5.21 -17.34 -0.09 1.67 16 9 N -0.79 -19.50 10.99 55.55 0.61 -18.89 16 10 Si 0.91 17.92 29.58 -169.99 -5.03 12.90 16 11 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 12 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 13 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 14 C -0.16 -3.94 8.66 -38.87 -0.34 -4.27 16 15 C -0.09 -1.90 9.09 -39.66 -0.36 -2.26 16 16 C -0.22 -4.59 5.11 -104.33 -0.53 -5.12 16 17 C 0.02 0.37 2.60 -29.03 -0.08 0.30 16 18 H 0.12 1.94 5.71 -51.93 -0.30 1.64 16 19 Cl -0.19 -3.11 26.27 -51.86 -1.36 -4.47 16 20 C 0.37 6.33 5.35 -29.04 -0.16 6.18 16 21 C -0.21 -2.87 8.62 36.00 0.31 -2.56 16 22 O -0.46 -8.79 17.84 5.99 0.11 -8.69 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.85 7.11 -51.93 -0.37 0.48 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 1.04 8.06 -51.93 -0.42 0.63 16 27 H 0.06 1.04 6.46 -51.93 -0.34 0.71 16 28 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 29 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 30 H 0.12 3.03 6.33 -52.49 -0.33 2.70 16 31 H 0.09 1.81 5.29 -52.49 -0.28 1.53 16 32 H 0.09 1.30 6.53 -51.93 -0.34 0.96 16 33 H 0.09 1.23 7.63 -51.93 -0.40 0.83 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 296.59 15.07 4.47 4.47 Total: -1.00 -26.39 296.59 -8.07 -34.47 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -4.00 Total: 5.54 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: -2.87 Total: -25.32 kcal Atomic # 7 Polarization: -19.50 SS G_CDS: 0.61 Total: -18.89 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.11 Total: -8.69 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.90 kcal Atomic # 17 Polarization: -3.11 SS G_CDS: -1.36 Total: -4.47 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -26.39 -8.07 -34.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396052758.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.619 kcal (2) G-P(sol) polarization free energy of solvation -26.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds