Wall clock time and date at job start Mon Mar 30 2020 07:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46799 * 2 1 4 4 C 1.37643 * 119.87535 * 266.56991 * 3 2 1 5 5 C 1.40704 * 119.74183 * 180.02562 * 4 3 2 6 6 C 1.41401 * 120.23863 * 179.97438 * 5 4 3 7 7 H 1.07990 * 119.99946 * 29.12056 * 6 5 4 8 8 C 1.39945 * 119.99634 * 209.11107 * 6 5 4 9 9 N 1.30826 * 119.99966 * 12.95043 * 8 6 5 10 10 Si 1.86801 * 119.99796 * 192.94660 * 8 6 5 11 11 H 1.48501 * 109.46926 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47152 * 120.00705 * 10 8 6 13 13 H 1.48500 * 109.46865 * 240.00226 * 10 8 6 14 14 C 1.40732 * 119.51398 * 0.02562 * 5 4 3 15 15 C 1.37602 * 119.74324 * 359.76506 * 14 5 4 16 16 C 1.38609 * 119.87754 * 86.59888 * 3 2 1 17 17 C 1.50703 * 119.74711 * 359.97082 * 16 3 2 18 18 H 1.08992 * 109.47168 * 326.82934 * 17 16 3 19 19 Cl 1.80302 * 109.46809 * 86.82943 * 17 16 3 20 20 C 1.50703 * 109.47045 * 206.82489 * 17 16 3 21 21 C 1.50697 * 120.00516 * 273.53535 * 20 17 16 22 22 O 1.20765 * 119.99588 * 93.53943 * 20 17 16 23 23 H 1.08997 * 109.47181 * 185.27107 * 1 2 3 24 24 H 1.09003 * 109.47152 * 305.27120 * 1 2 3 25 25 H 1.09001 * 109.46972 * 65.27123 * 1 2 3 26 26 H 1.09000 * 109.47169 * 240.00177 * 2 1 3 27 27 H 1.08995 * 109.47406 * 119.99948 * 2 1 3 28 28 H 1.07996 * 120.13069 * 359.97438 * 4 3 2 29 29 H 0.96997 * 119.99755 * 179.97438 * 9 8 6 30 30 H 1.07996 * 120.12859 * 180.02562 * 14 5 4 31 31 H 1.07997 * 119.87370 * 180.22716 * 15 14 5 32 32 H 1.09002 * 109.46649 * 0.02562 * 21 20 17 33 33 H 1.09000 * 109.47269 * 119.99642 * 21 20 17 34 34 H 1.09000 * 109.47418 * 240.00231 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3281 2.0435 -1.1914 5 6 2.7974 3.3700 -1.1881 6 6 3.1050 4.0195 -2.4058 7 1 2.5824 3.7464 -3.3105 8 6 4.0865 5.0165 -2.4385 9 7 4.8918 5.1753 -1.4197 10 14 4.2470 6.1204 -3.9368 11 1 3.2246 5.7393 -4.9442 12 1 4.0412 7.5348 -3.5339 13 1 5.6025 5.9650 -4.5232 14 6 2.9593 4.0450 0.0361 15 6 2.6532 3.4043 1.2147 16 6 2.1952 2.0956 1.1997 17 6 1.8678 1.4031 2.4976 18 1 1.0367 0.7152 2.3428 19 17 3.3101 0.4841 3.0687 20 6 1.4844 2.4297 3.5320 21 6 2.5503 3.0985 4.3613 22 8 0.3229 2.7165 3.6965 23 1 -0.3633 -1.0233 0.0944 24 1 -0.3633 0.5934 0.8390 25 1 -0.3633 0.4299 -0.9334 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.2013 1.5157 -2.1250 29 1 5.5723 5.8661 -1.4425 30 1 3.3184 5.0634 0.0502 31 1 2.7732 3.9215 2.1551 32 1 3.5289 2.7149 4.0728 33 1 2.5187 4.1751 4.1939 34 1 2.3742 2.8894 5.4165 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396052758.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:09 Heat of formation + Delta-G solvation = -62.856799 kcal Electronic energy + Delta-G solvation = -17950.970472 eV Core-core repulsion = 15066.010003 eV Total energy + Delta-G solvation = -2884.960468 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.98929 -39.58206 -37.01914 -36.11232 -34.34683 -33.27610 -30.99339 -30.00952 -29.12666 -26.14942 -24.39343 -22.76467 -21.59536 -20.49873 -18.82510 -17.51696 -17.21493 -16.84223 -16.65713 -15.85008 -15.44448 -15.27720 -14.78777 -14.53442 -14.30584 -13.96302 -13.63175 -13.41678 -13.19577 -13.16167 -12.94265 -12.85618 -12.62436 -12.38522 -12.13609 -12.05988 -11.81420 -11.58149 -11.29645 -11.13282 -11.04471 -10.58808 -9.38084 -9.12443 -8.65593 -6.40853 0.39938 0.82515 1.08679 1.33107 1.38757 1.52621 1.65051 2.19420 2.67849 2.94874 3.65455 3.74597 3.85669 4.16266 4.20966 4.26459 4.42589 4.55312 4.58600 4.61918 4.86560 4.95257 4.99303 5.04152 5.07913 5.13660 5.28938 5.39542 5.46360 5.67407 5.86618 6.05913 6.06851 6.25058 6.32726 6.63941 6.89229 6.95862 8.31104 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022383 B = 0.006140 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.633834 B = 4559.135446 C = 5098.059301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 C -0.029 4.029 4 C -0.234 4.234 5 C 0.093 3.907 6 C -0.494 4.494 7 H 0.077 0.923 8 C 0.035 3.965 9 N -0.822 5.822 10 Si 0.982 3.018 11 H -0.259 1.259 12 H -0.265 1.265 13 H -0.266 1.266 14 C -0.186 4.186 15 C -0.090 4.090 16 C -0.217 4.217 17 C 0.020 3.980 18 H 0.126 0.874 19 Cl -0.170 7.170 20 C 0.373 3.627 21 C -0.207 4.207 22 O -0.481 6.481 23 H 0.080 0.920 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.289 0.711 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.346 -5.077 6.171 8.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.123 4.123 3 C -0.029 4.029 4 C -0.253 4.253 5 C 0.091 3.909 6 C -0.523 4.523 7 H 0.095 0.905 8 C -0.180 4.180 9 N -0.448 5.448 10 Si 0.803 3.197 11 H -0.182 1.182 12 H -0.189 1.189 13 H -0.190 1.190 14 C -0.205 4.205 15 C -0.108 4.108 16 C -0.219 4.219 17 C -0.023 4.023 18 H 0.143 0.857 19 Cl -0.143 7.143 20 C 0.251 3.749 21 C -0.263 4.263 22 O -0.356 6.356 23 H 0.099 0.901 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.118 0.882 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.644 -4.876 6.394 8.464 hybrid contribution 0.529 0.629 -0.793 1.142 sum -2.116 -4.247 5.601 7.341 Atomic orbital electron populations 1.21711 0.94010 1.02394 1.01569 1.20613 0.96706 0.92125 1.02902 1.19488 0.95843 0.95720 0.91891 1.21045 1.12655 0.95121 0.96491 1.18017 0.88058 0.91127 0.93740 1.19910 1.18768 1.17866 0.95760 0.90530 1.26735 0.93398 0.97284 1.00610 1.69851 1.13864 1.28876 1.32219 0.85157 0.79131 0.77800 0.77650 1.18237 1.18941 1.19048 1.21192 1.06906 1.00000 0.92423 1.20857 0.98130 0.94369 0.97446 1.18542 1.16298 0.95751 0.91268 1.23364 0.89931 0.95344 0.93682 0.85652 1.98706 1.48055 1.77083 1.90459 1.24883 0.90085 0.79681 0.80289 1.22431 0.99275 1.02683 1.01919 1.90403 1.23247 1.58896 1.63079 0.90139 0.93591 0.93152 0.90974 0.90564 0.88226 0.90050 0.88063 0.87048 0.88776 0.88002 0.86229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.67 71.98 0.70 -3.20 16 2 C -0.09 -2.76 5.36 29.85 0.16 -2.60 16 3 C -0.03 -1.19 5.13 -19.92 -0.10 -1.29 16 4 C -0.23 -11.03 9.42 22.73 0.21 -10.81 16 5 C 0.09 4.88 5.54 -21.29 -0.12 4.77 16 6 C -0.49 -26.00 9.05 23.46 0.21 -25.79 16 7 H 0.08 3.91 7.88 -2.92 -0.02 3.88 16 8 C 0.03 1.72 5.21 85.26 0.44 2.16 16 9 N -0.82 -41.93 10.99 21.83 0.24 -41.69 16 10 Si 0.98 37.45 29.58 68.60 2.03 39.48 16 11 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 12 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 13 H -0.27 -9.72 7.11 99.48 0.71 -9.02 16 14 C -0.19 -9.47 8.66 22.73 0.20 -9.27 16 15 C -0.09 -3.95 9.09 22.22 0.20 -3.74 16 16 C -0.22 -8.72 5.11 -19.67 -0.10 -8.82 16 17 C 0.02 0.67 2.60 29.10 0.08 0.74 16 18 H 0.13 3.89 5.71 -2.39 -0.01 3.87 16 19 Cl -0.17 -5.07 26.27 -2.72 -0.07 -5.14 16 20 C 0.37 11.85 5.35 29.10 0.16 12.00 16 21 C -0.21 -5.10 8.62 71.23 0.61 -4.49 16 22 O -0.48 -17.68 17.84 -1.46 -0.03 -17.71 16 23 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.04 1.35 7.11 -2.39 -0.02 1.33 16 25 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.07 2.20 8.06 -2.39 -0.02 2.18 16 27 H 0.08 2.25 6.46 -2.39 -0.02 2.24 16 28 H 0.10 4.49 8.06 -2.91 -0.02 4.47 16 29 H 0.29 13.28 8.30 -92.71 -0.77 12.51 16 30 H 0.10 5.42 6.33 -2.91 -0.02 5.41 16 31 H 0.11 4.33 5.29 -2.91 -0.02 4.31 16 32 H 0.09 2.34 6.53 -2.39 -0.02 2.32 16 33 H 0.10 2.41 7.63 -2.39 -0.02 2.40 16 34 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -57.99 296.59 5.94 -52.06 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 1.11 Total: 23.35 kcal Atomic # 6 Polarization: -53.00 SS G_CDS: 2.65 Total: -50.35 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.24 Total: -41.69 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.03 Total: -17.71 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Atomic # 17 Polarization: -5.07 SS G_CDS: -0.07 Total: -5.14 kcal Total: -57.99 5.94 -52.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396052758.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.798 kcal (2) G-P(sol) polarization free energy of solvation -57.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds