Wall clock time and date at job start Mon Mar 30 2020 07:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50707 * 109.47084 * 2 1 4 4 C 1.37633 * 120.12710 * 264.99819 * 3 2 1 5 5 C 1.38609 * 120.24765 * 179.97438 * 4 3 2 6 6 C 1.38647 * 120.50340 * 0.02562 * 5 4 3 7 7 C 1.37598 * 120.24851 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.12909 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47129 * 340.96140 * 8 7 6 10 10 Cl 1.80300 * 109.47470 * 220.96272 * 8 7 6 11 11 C 1.50704 * 109.47295 * 100.96608 * 8 7 6 12 12 C 1.50706 * 119.99289 * 275.80646 * 11 8 7 13 13 O 1.20752 * 120.00146 * 95.80253 * 11 8 7 14 14 C 1.40691 * 120.12813 * 85.25173 * 3 2 1 15 15 C 1.41401 * 120.24310 * 0.02571 * 14 3 2 16 16 H 1.07999 * 120.00126 * 233.69465 * 15 14 3 17 17 C 1.39949 * 120.00057 * 53.70140 * 15 14 3 18 18 N 1.30820 * 119.99900 * 19.79549 * 17 15 14 19 19 Si 1.86803 * 119.99795 * 199.80170 * 17 15 14 20 20 H 1.48498 * 109.47075 * 89.99618 * 19 17 15 21 21 H 1.48497 * 109.46680 * 209.99857 * 19 17 15 22 22 H 1.48497 * 109.46902 * 329.99547 * 19 17 15 23 23 H 1.09007 * 109.47046 * 60.00263 * 1 2 3 24 24 H 1.09003 * 109.47329 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47278 * 299.99950 * 1 2 3 26 26 H 1.09002 * 109.47278 * 240.00050 * 2 1 3 27 27 H 1.08995 * 109.47321 * 120.00093 * 2 1 3 28 28 H 1.08006 * 119.87891 * 359.97438 * 4 3 2 29 29 H 1.08008 * 119.74726 * 180.02562 * 5 4 3 30 30 H 1.08002 * 119.88098 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.46919 * 59.99982 * 12 11 8 32 32 H 1.09000 * 109.46509 * 179.97438 * 12 11 8 33 33 H 1.08998 * 109.47077 * 299.99263 * 12 11 8 34 34 H 0.97000 * 119.99729 * 183.21015 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3604 2.0376 -1.1859 5 6 2.8222 3.3445 -1.1888 6 6 2.9595 4.0451 -0.0003 7 6 2.6374 3.4485 1.1971 8 6 2.7883 4.2123 2.4874 9 1 3.4588 5.0576 2.3330 10 17 3.4730 3.1255 3.7527 11 6 1.4398 4.7156 2.9339 12 6 0.8970 6.0079 2.3803 13 8 0.7943 4.0835 3.7350 14 6 2.1727 2.1203 1.2127 15 6 1.8443 1.4949 2.4376 16 1 1.1495 1.9676 3.1160 17 6 2.4196 0.2635 2.7710 18 7 3.5185 -0.1270 2.1781 19 14 1.6183 -0.8227 4.0623 20 1 0.6465 -1.7351 3.4079 21 1 2.6616 -1.6231 4.7523 22 1 0.9100 0.0267 5.0533 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.2577 1.5012 -2.1177 29 1 3.0769 3.8208 -2.1242 30 1 3.3198 5.0631 -0.0143 31 1 0.8030 5.9282 1.2973 32 1 -0.0822 6.2068 2.8160 33 1 1.5772 6.8231 2.6271 34 1 3.8917 -1.0004 2.3750 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396053648.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:27 Heat of formation + Delta-G solvation = -42.867542 kcal Electronic energy + Delta-G solvation = -18747.887940 eV Core-core repulsion = 15863.794271 eV Total energy + Delta-G solvation = -2884.093669 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.63325 -39.45633 -36.39669 -35.69798 -34.32607 -32.70864 -31.25661 -30.08535 -27.93670 -26.54810 -24.28475 -22.35717 -21.28107 -20.14731 -18.90701 -17.22699 -16.59422 -16.58160 -16.47536 -15.85702 -15.75776 -15.13725 -14.35262 -14.32592 -14.15962 -13.67486 -13.34041 -13.21027 -13.13346 -12.94481 -12.87600 -12.77515 -12.52106 -12.31028 -12.09085 -11.69960 -11.52896 -11.44570 -11.23011 -10.85092 -10.42494 -10.11440 -9.05733 -8.72376 -8.35794 -6.00672 0.73015 1.07968 1.22727 1.36324 1.41441 1.46377 1.78497 2.34555 2.93221 3.24205 3.68060 4.07276 4.17582 4.25765 4.41225 4.48651 4.59448 4.68952 4.72846 4.82637 4.86409 4.95377 5.09425 5.19522 5.26638 5.38578 5.49695 5.57700 5.64363 5.94306 6.02825 6.11127 6.38134 6.49041 6.64820 6.86213 7.14030 7.26100 8.64832 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015307 B = 0.012165 C = 0.008636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.735059 B = 2301.073611 C = 3241.603826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.080 4.080 3 C -0.137 4.137 4 C -0.113 4.113 5 C -0.209 4.209 6 C -0.088 4.088 7 C -0.198 4.198 8 C 0.012 3.988 9 H 0.139 0.861 10 Cl -0.162 7.162 11 C 0.349 3.651 12 C -0.187 4.187 13 O -0.476 6.476 14 C 0.122 3.878 15 C -0.466 4.466 16 H 0.069 0.931 17 C 0.078 3.922 18 N -0.832 5.832 19 Si 0.903 3.097 20 H -0.261 1.261 21 H -0.280 1.280 22 H -0.276 1.276 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.039 0.961 26 H 0.042 0.958 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.127 0.873 30 H 0.137 0.863 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.769 8.775 -3.930 9.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.117 4.117 3 C -0.138 4.138 4 C -0.132 4.132 5 C -0.228 4.228 6 C -0.107 4.107 7 C -0.200 4.200 8 C -0.032 4.032 9 H 0.157 0.843 10 Cl -0.135 7.135 11 C 0.225 3.775 12 C -0.243 4.243 13 O -0.350 6.350 14 C 0.120 3.880 15 C -0.498 4.498 16 H 0.087 0.913 17 C -0.132 4.132 18 N -0.462 5.462 19 Si 0.728 3.272 20 H -0.186 1.186 21 H -0.206 1.206 22 H -0.201 1.201 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.126 0.874 29 H 0.145 0.855 30 H 0.154 0.846 31 H 0.125 0.875 32 H 0.104 0.896 33 H 0.143 0.857 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.876 8.187 -3.349 9.042 hybrid contribution -0.036 -1.075 0.826 1.356 sum -1.912 7.112 -2.523 7.785 Atomic orbital electron populations 1.21564 0.95600 1.00555 1.00878 1.20488 0.95353 0.94275 1.01586 1.20261 1.03901 0.96744 0.92866 1.20964 0.99736 0.95843 0.96619 1.20864 1.08903 0.95204 0.97831 1.20801 0.99016 0.99582 0.91252 1.19698 1.10610 0.97676 0.92000 1.23258 0.96695 0.94050 0.89194 0.84303 1.98714 1.85893 1.71343 1.57581 1.25294 0.86814 0.87183 0.78170 1.22259 1.03601 0.94371 1.04118 1.90398 1.58797 1.56707 1.29098 1.17487 0.87058 0.90588 0.92892 1.19138 1.24126 1.03662 1.02898 0.91345 1.25488 0.93464 0.97622 0.96636 1.69894 1.15683 1.19504 1.41108 0.86410 0.79787 0.79965 0.81045 1.18554 1.20574 1.20136 0.92885 0.92745 0.94211 0.93888 0.90717 0.87368 0.85521 0.84571 0.87525 0.89638 0.85651 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.02 9.89 71.98 0.71 -4.30 16 2 C -0.08 -3.52 5.44 29.85 0.16 -3.36 16 3 C -0.14 -6.31 4.90 -19.41 -0.10 -6.40 16 4 C -0.11 -4.59 9.66 22.22 0.21 -4.38 16 5 C -0.21 -7.52 10.05 22.46 0.23 -7.30 16 6 C -0.09 -3.12 9.65 22.22 0.21 -2.90 16 7 C -0.20 -8.25 4.91 -19.41 -0.10 -8.35 16 8 C 0.01 0.45 3.10 29.10 0.09 0.54 16 9 H 0.14 3.94 7.99 -2.39 -0.02 3.92 16 10 Cl -0.16 -7.32 24.30 -2.72 -0.07 -7.38 16 11 C 0.35 12.28 6.24 29.10 0.18 12.46 16 12 C -0.19 -4.16 10.26 71.24 0.73 -3.43 16 13 O -0.48 -21.07 15.03 -1.42 -0.02 -21.09 16 14 C 0.12 5.92 5.00 -21.29 -0.11 5.81 16 15 C -0.47 -24.15 4.67 23.46 0.11 -24.04 16 16 H 0.07 3.84 5.67 -2.91 -0.02 3.82 16 17 C 0.08 4.02 3.06 85.26 0.26 4.28 16 18 N -0.83 -43.85 11.74 21.83 0.26 -43.59 16 19 Si 0.90 41.92 29.60 68.60 2.03 43.95 16 20 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 23 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 24 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.04 1.68 8.01 -2.39 -0.02 1.66 16 26 H 0.04 1.77 8.05 -2.39 -0.02 1.75 16 27 H 0.07 3.67 4.15 -2.39 -0.01 3.66 16 28 H 0.11 3.91 8.06 -2.91 -0.02 3.89 16 29 H 0.13 3.70 8.06 -2.91 -0.02 3.67 16 30 H 0.14 3.60 8.02 -2.91 -0.02 3.58 16 31 H 0.11 2.16 8.14 -2.39 -0.02 2.15 16 32 H 0.08 1.85 8.12 -2.39 -0.02 1.83 16 33 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.27 13.67 8.30 -92.71 -0.77 12.91 16 Total: -1.00 -62.62 295.82 5.91 -56.71 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 1.10 Total: 12.77 kcal Atomic # 6 Polarization: -43.97 SS G_CDS: 2.61 Total: -41.37 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.26 Total: -43.59 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.02 Total: -21.09 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 17 Polarization: -7.32 SS G_CDS: -0.07 Total: -7.38 kcal Total: -62.62 5.91 -56.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396053648.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.847 kcal (2) G-P(sol) polarization free energy of solvation -62.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds