Wall clock time and date at job start Mon Mar 30 2020 07:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47585 * 2 1 4 4 C 1.37634 * 120.12416 * 265.00270 * 3 2 1 5 5 C 1.38625 * 120.24968 * 179.97438 * 4 3 2 6 6 C 1.38661 * 120.49484 * 0.02562 * 5 4 3 7 7 C 1.37594 * 120.24902 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.12679 * 179.97438 * 7 6 5 9 9 H 1.08993 * 109.47311 * 213.67596 * 8 7 6 10 10 Cl 1.80305 * 109.46882 * 333.67433 * 8 7 6 11 11 C 1.50697 * 109.47085 * 93.67144 * 8 7 6 12 12 C 1.50700 * 120.00280 * 275.17893 * 11 8 7 13 13 O 1.20762 * 119.99842 * 95.17814 * 11 8 7 14 14 C 1.40692 * 120.12971 * 84.72382 * 3 2 1 15 15 C 1.41400 * 120.24304 * 359.97438 * 14 3 2 16 16 H 1.08001 * 120.00064 * 235.66582 * 15 14 3 17 17 C 1.39941 * 119.99603 * 55.67147 * 15 14 3 18 18 N 1.30821 * 120.00324 * 17.32348 * 17 15 14 19 19 Si 1.86810 * 119.99944 * 197.32359 * 17 15 14 20 20 H 1.48494 * 109.46926 * 59.99512 * 19 17 15 21 21 H 1.48493 * 109.47200 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46707 * 299.99820 * 19 17 15 23 23 H 1.09001 * 109.47437 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47319 * 300.00582 * 1 2 3 25 25 H 1.09003 * 109.47047 * 59.99508 * 1 2 3 26 26 H 1.08998 * 109.47103 * 239.99919 * 2 1 3 27 27 H 1.09001 * 109.47048 * 119.99536 * 2 1 3 28 28 H 1.08001 * 119.88022 * 359.97438 * 4 3 2 29 29 H 1.07989 * 119.75044 * 180.02562 * 5 4 3 30 30 H 1.08002 * 119.86889 * 180.02562 * 6 5 4 31 31 H 1.09001 * 109.47227 * 90.00148 * 12 11 8 32 32 H 1.09001 * 109.47263 * 210.00200 * 12 11 8 33 33 H 1.08998 * 109.46897 * 329.99741 * 12 11 8 34 34 H 0.97000 * 120.00438 * 174.96625 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3605 2.0374 -1.1859 5 6 2.8224 3.3445 -1.1890 6 6 2.9599 4.0450 -0.0003 7 6 2.6388 3.4480 1.1971 8 6 2.7899 4.2118 2.4875 9 1 3.0811 3.5264 3.2834 10 17 4.0579 5.4785 2.2913 11 6 1.4784 4.8644 2.8414 12 6 1.1210 6.2051 2.2534 13 8 0.7139 4.3130 3.5962 14 6 2.1624 2.1239 1.2117 15 6 1.8222 1.5027 2.4356 16 1 1.0978 1.9625 3.0915 17 6 2.4245 0.2923 2.7969 18 7 3.5225 -0.0956 2.2008 19 14 1.6605 -0.7695 4.1305 20 1 0.2859 -1.1593 3.7260 21 1 2.4839 -1.9900 4.3239 22 1 1.6039 -0.0034 5.4014 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.2577 1.5011 -2.1177 29 1 3.0771 3.8206 -2.1242 30 1 3.3203 5.0630 -0.0145 31 1 0.5864 6.0593 1.3148 32 1 0.4866 6.7508 2.9519 33 1 2.0315 6.7750 2.0682 34 1 3.9799 -0.8968 2.5004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396053651.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:29 Heat of formation + Delta-G solvation = -51.770741 kcal Electronic energy + Delta-G solvation = -18499.270410 eV Core-core repulsion = 15614.790669 eV Total energy + Delta-G solvation = -2884.479741 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.79637 -39.60336 -37.09043 -35.68102 -34.48573 -32.78396 -31.32570 -30.14657 -28.10658 -26.76752 -24.33352 -22.45644 -21.38523 -20.20121 -19.02410 -17.27316 -16.93160 -16.73102 -16.66761 -15.94461 -15.85121 -15.21872 -14.46304 -14.41346 -14.23256 -13.86458 -13.57254 -13.26630 -13.17231 -13.06245 -12.90079 -12.87969 -12.60507 -12.37621 -12.15113 -11.89603 -11.77512 -11.58397 -11.34222 -11.10701 -10.63614 -10.46924 -9.14440 -8.83898 -8.47461 -6.34101 0.50965 1.01176 1.05414 1.33258 1.37366 1.42434 1.44633 2.26540 2.80507 3.04857 3.51545 3.94064 4.05674 4.34885 4.37254 4.44348 4.56505 4.62574 4.67445 4.80865 4.83342 4.91625 5.05417 5.10629 5.22783 5.28588 5.44362 5.47644 5.58568 5.87977 5.94743 6.02265 6.24906 6.36778 6.42456 6.67701 6.99808 7.08799 8.52862 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016850 B = 0.009415 C = 0.007608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.337366 B = 2973.143021 C = 3679.349719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.077 4.077 3 C -0.129 4.129 4 C -0.113 4.113 5 C -0.200 4.200 6 C -0.091 4.091 7 C -0.188 4.188 8 C 0.030 3.970 9 H 0.101 0.899 10 Cl -0.158 7.158 11 C 0.367 3.633 12 C -0.197 4.197 13 O -0.478 6.478 14 C 0.120 3.880 15 C -0.519 4.519 16 H 0.068 0.932 17 C 0.064 3.936 18 N -0.841 5.841 19 Si 0.935 3.065 20 H -0.262 1.262 21 H -0.270 1.270 22 H -0.273 1.273 23 H 0.057 0.943 24 H 0.038 0.962 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.116 0.884 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.742 6.883 -3.235 7.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.115 4.115 3 C -0.130 4.130 4 C -0.131 4.131 5 C -0.218 4.218 6 C -0.109 4.109 7 C -0.190 4.190 8 C -0.015 4.015 9 H 0.119 0.881 10 Cl -0.131 7.131 11 C 0.244 3.756 12 C -0.254 4.254 13 O -0.353 6.353 14 C 0.118 3.882 15 C -0.551 4.551 16 H 0.086 0.914 17 C -0.147 4.147 18 N -0.471 5.471 19 Si 0.758 3.242 20 H -0.186 1.186 21 H -0.195 1.195 22 H -0.198 1.198 23 H 0.076 0.924 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.092 0.908 28 H 0.134 0.866 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.912 6.480 -2.884 7.346 hybrid contribution 0.110 -0.769 0.782 1.102 sum -1.802 5.711 -2.102 6.347 Atomic orbital electron populations 1.21577 0.95403 1.00807 1.00918 1.20457 0.95481 0.93845 1.01709 1.20302 1.03227 0.96848 0.92626 1.21029 0.99507 0.95647 0.96890 1.20964 1.07819 0.95257 0.97772 1.20906 0.98780 0.99643 0.91549 1.19707 1.10358 0.97030 0.91879 1.23229 0.88215 0.90129 0.99917 0.88086 1.98646 1.58110 1.58115 1.98209 1.25062 0.85623 0.88302 0.76642 1.22323 1.05562 0.93634 1.03869 1.90400 1.50269 1.64217 1.30438 1.17445 0.87715 0.89871 0.93178 1.19220 1.25145 1.05880 1.04895 0.91381 1.25922 0.94066 0.96841 0.97849 1.69808 1.14187 1.23744 1.39352 0.85971 0.79968 0.78550 0.79668 1.18619 1.19479 1.19760 0.92368 0.94284 0.92828 0.93430 0.90796 0.86637 0.85245 0.85265 0.87330 0.87977 0.87471 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.97 9.89 71.98 0.71 -4.25 16 2 C -0.08 -3.38 5.44 29.85 0.16 -3.22 16 3 C -0.13 -5.97 4.90 -19.41 -0.10 -6.07 16 4 C -0.11 -4.58 9.66 22.22 0.21 -4.37 16 5 C -0.20 -7.46 10.05 22.46 0.23 -7.24 16 6 C -0.09 -3.49 9.14 22.22 0.20 -3.28 16 7 C -0.19 -8.24 5.05 -19.40 -0.10 -8.34 16 8 C 0.03 1.18 2.91 29.10 0.08 1.26 16 9 H 0.10 4.65 7.27 -2.39 -0.02 4.64 16 10 Cl -0.16 -5.10 24.88 -2.72 -0.07 -5.16 16 11 C 0.37 13.59 6.37 29.10 0.19 13.77 16 12 C -0.20 -5.12 10.11 71.24 0.72 -4.40 16 13 O -0.48 -21.10 16.66 -1.46 -0.02 -21.12 16 14 C 0.12 5.91 5.07 -21.29 -0.11 5.81 16 15 C -0.52 -26.99 6.80 23.46 0.16 -26.83 16 16 H 0.07 3.74 6.69 -2.91 -0.02 3.72 16 17 C 0.06 3.24 3.47 85.26 0.30 3.53 16 18 N -0.84 -43.58 11.73 21.83 0.26 -43.33 16 19 Si 0.93 40.11 29.60 68.60 2.03 42.14 16 20 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 21 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 23 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.04 1.63 7.94 -2.39 -0.02 1.61 16 25 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.05 1.91 8.05 -2.39 -0.02 1.89 16 27 H 0.07 3.57 4.28 -2.39 -0.01 3.56 16 28 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 29 H 0.13 3.94 8.06 -2.92 -0.02 3.92 16 30 H 0.13 4.24 6.67 -2.91 -0.02 4.22 16 31 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.11 2.43 6.31 -2.39 -0.02 2.42 16 34 H 0.28 13.60 8.30 -92.71 -0.77 12.83 16 Total: -1.00 -57.35 297.25 5.96 -51.39 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 1.11 Total: 19.70 kcal Atomic # 6 Polarization: -46.28 SS G_CDS: 2.66 Total: -43.62 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.26 Total: -43.33 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.02 Total: -21.12 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Atomic # 17 Polarization: -5.10 SS G_CDS: -0.07 Total: -5.16 kcal Total: -57.35 5.96 -51.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396053651.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.383 kcal (2) G-P(sol) polarization free energy of solvation -57.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds