Wall clock time and date at job start Mon Mar 30 2020 07:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50708 * 109.47316 * 2 1 4 4 C 1.37788 * 119.77881 * 269.98298 * 3 2 1 5 5 C 1.40779 * 120.09952 * 180.02562 * 4 3 2 6 6 C 1.41447 * 120.16751 * 179.97438 * 5 4 3 7 7 H 1.07999 * 119.99558 * 204.53709 * 6 5 4 8 8 C 1.39930 * 119.99659 * 24.54399 * 6 5 4 9 9 N 1.30825 * 120.00475 * 17.89673 * 8 6 5 10 10 Si 1.86802 * 119.99604 * 197.90122 * 8 6 5 11 11 H 1.48500 * 109.47355 * 89.99876 * 10 8 6 12 12 H 1.48499 * 109.47033 * 210.00105 * 10 8 6 13 13 H 1.48508 * 109.46977 * 329.99826 * 10 8 6 14 14 C 1.40463 * 119.66370 * 359.66558 * 5 4 3 15 15 C 1.39289 * 119.56520 * 0.62130 * 14 5 4 16 16 C 1.47211 * 120.05373 * 179.68427 * 15 14 5 17 17 O 1.21252 * 120.00232 * 179.73544 * 16 15 14 18 18 C 1.50702 * 120.00009 * 359.73586 * 16 15 14 19 19 H 1.08999 * 109.47314 * 34.99777 * 18 16 15 20 20 C 1.52997 * 109.46978 * 274.99463 * 18 16 15 21 21 Cl 1.80302 * 109.47104 * 154.99972 * 18 16 15 22 22 C 1.38251 * 119.77618 * 90.00456 * 3 2 1 23 23 H 1.08997 * 109.47378 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46466 * 299.99838 * 1 2 3 25 25 H 1.09000 * 109.47251 * 59.99155 * 1 2 3 26 26 H 1.09007 * 109.46947 * 240.00370 * 2 1 3 27 27 H 1.09000 * 109.47745 * 120.00658 * 2 1 3 28 28 H 1.08004 * 119.95204 * 359.97438 * 4 3 2 29 29 H 0.96999 * 120.00065 * 179.97438 * 9 8 6 30 30 H 1.08003 * 120.22106 * 180.34260 * 14 5 4 31 31 H 1.08999 * 109.47657 * 299.99569 * 20 18 16 32 32 H 1.09002 * 109.47161 * 60.00207 * 20 18 16 33 33 H 1.09006 * 109.47277 * 179.97438 * 20 18 16 34 34 H 1.08005 * 119.83027 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2609 2.0659 -1.1959 5 6 2.7307 3.3930 -1.2038 6 6 2.9662 4.0564 -2.4307 7 1 3.6684 4.8758 -2.4753 8 6 2.2893 3.6511 -3.5863 9 7 1.2078 2.9214 -3.4891 10 14 2.9301 4.1518 -5.2681 11 1 3.8794 3.1225 -5.7627 12 1 1.7929 4.2723 -6.2153 13 1 3.6275 5.4587 -5.1630 14 6 2.9581 4.0571 0.0128 15 6 2.7283 3.3897 1.2136 16 6 2.9698 4.0732 2.4949 17 8 2.7648 3.4929 3.5396 18 6 3.4718 5.4941 2.5081 19 1 3.0395 6.0400 1.6695 20 6 4.9969 5.4973 2.3869 21 17 2.9901 6.2873 4.0539 22 6 2.2614 2.0681 1.2000 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8901 25 1 -0.3634 0.5140 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.0800 1.5524 -2.1287 29 1 0.7385 2.6408 -4.2903 30 1 3.3133 5.0771 0.0172 31 1 5.4293 4.9515 3.2256 32 1 5.2882 5.0177 1.4524 33 1 5.3600 6.5250 2.3960 34 1 2.0789 1.5531 2.1316 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396054212.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:59 Heat of formation + Delta-G solvation = -64.637439 kcal Electronic energy + Delta-G solvation = -17639.353537 eV Core-core repulsion = 14754.315854 eV Total energy + Delta-G solvation = -2885.037683 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.88481 -39.15800 -37.05544 -35.87383 -34.84956 -33.43259 -31.60619 -30.10077 -27.24273 -26.21050 -24.56666 -23.42063 -21.89991 -20.11338 -18.96385 -17.57398 -17.09415 -16.61535 -16.35227 -15.91860 -15.54632 -15.45914 -14.71130 -14.50371 -14.23567 -13.95836 -13.66331 -13.31017 -13.28722 -12.86407 -12.79770 -12.70373 -12.59190 -12.24610 -12.24390 -12.00754 -11.85862 -11.76304 -11.51648 -11.24358 -11.01371 -10.53715 -9.43301 -9.29648 -8.63775 -6.35402 -0.00946 0.92090 1.00181 1.42506 1.47312 1.54591 1.74990 2.22405 2.72351 2.86879 3.61857 3.81806 3.93490 4.13181 4.16368 4.29289 4.54856 4.60916 4.67956 4.68714 4.80182 4.90577 4.96220 5.03923 5.08249 5.10969 5.27116 5.37805 5.40367 5.55800 5.77185 6.00086 6.08960 6.21916 6.48745 6.61443 6.90712 6.94741 8.33092 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016599 B = 0.006348 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.451872 B = 4409.454720 C = 5767.935093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 C -0.085 4.085 4 C -0.147 4.147 5 C 0.070 3.930 6 C -0.492 4.492 7 H 0.085 0.915 8 C 0.039 3.961 9 N -0.823 5.823 10 Si 0.977 3.023 11 H -0.265 1.265 12 H -0.273 1.273 13 H -0.256 1.256 14 C -0.179 4.179 15 C -0.152 4.152 16 C 0.401 3.599 17 O -0.476 6.476 18 C -0.043 4.043 19 H 0.140 0.860 20 C -0.145 4.145 21 Cl -0.168 7.168 22 C -0.181 4.181 23 H 0.076 0.924 24 H 0.046 0.954 25 H 0.040 0.960 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.288 0.712 30 H 0.125 0.875 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.593 1.866 2.848 4.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 C -0.085 4.085 4 C -0.166 4.166 5 C 0.067 3.933 6 C -0.521 4.521 7 H 0.103 0.897 8 C -0.177 4.177 9 N -0.449 5.449 10 Si 0.798 3.202 11 H -0.190 1.190 12 H -0.198 1.198 13 H -0.179 1.179 14 C -0.198 4.198 15 C -0.153 4.153 16 C 0.280 3.720 17 O -0.352 6.352 18 C -0.088 4.088 19 H 0.158 0.842 20 C -0.202 4.202 21 Cl -0.142 7.142 22 C -0.200 4.200 23 H 0.095 0.905 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.126 0.874 29 H 0.099 0.901 30 H 0.143 0.857 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.122 0.878 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.254 1.529 3.384 4.937 hybrid contribution -0.131 0.194 -0.763 0.798 sum 3.123 1.723 2.621 4.426 Atomic orbital electron populations 1.21645 0.94561 1.01973 1.01100 1.20470 0.96507 0.92187 1.02138 1.19800 0.99322 0.96700 0.92690 1.21467 1.03872 0.94907 0.96401 1.17913 0.90371 0.91808 0.93176 1.19820 1.22831 1.16537 0.92929 0.89672 1.26671 0.93005 0.93214 1.04789 1.69849 1.13140 1.28913 1.32966 0.85265 0.78757 0.79907 0.76237 1.18956 1.19820 1.17912 1.21482 1.08343 0.99217 0.90803 1.19943 1.06410 0.95886 0.93084 1.22758 0.72345 0.88620 0.88231 1.90463 1.41260 1.67997 1.35521 1.24677 1.01484 0.93589 0.89016 0.84243 1.22035 0.88380 1.05698 1.04088 1.98713 1.93558 1.82021 1.39859 1.20651 1.07762 0.94895 0.96691 0.90482 0.93490 0.94126 0.91596 0.90750 0.87366 0.90129 0.85732 0.91355 0.89447 0.87834 0.87777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 9.89 71.98 0.71 -3.71 16 2 C -0.08 -2.69 6.05 29.85 0.18 -2.51 16 3 C -0.08 -3.70 5.12 -19.97 -0.10 -3.80 16 4 C -0.15 -7.13 8.33 22.78 0.19 -6.94 16 5 C 0.07 3.40 5.57 -21.33 -0.12 3.28 16 6 C -0.49 -23.88 9.05 23.47 0.21 -23.67 16 7 H 0.09 3.89 7.91 -2.91 -0.02 3.87 16 8 C 0.04 1.79 5.13 85.25 0.44 2.23 16 9 N -0.82 -40.11 10.96 21.82 0.24 -39.87 16 10 Si 0.98 35.35 29.59 68.60 2.03 37.38 16 11 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 12 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 13 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 14 C -0.18 -7.68 9.11 23.07 0.21 -7.47 16 15 C -0.15 -6.39 5.86 -20.20 -0.12 -6.51 16 16 C 0.40 15.02 6.28 28.05 0.18 15.19 16 17 O -0.48 -19.90 16.25 -2.94 -0.05 -19.94 16 18 C -0.04 -1.27 3.04 29.85 0.09 -1.18 16 19 H 0.14 3.75 6.72 -2.39 -0.02 3.73 16 20 C -0.15 -3.41 9.30 71.98 0.67 -2.74 16 21 Cl -0.17 -4.99 28.00 -2.72 -0.08 -5.07 16 22 C -0.18 -7.88 9.24 22.74 0.21 -7.67 16 23 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 24 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 25 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.07 2.25 8.08 -2.38 -0.02 2.23 16 27 H 0.07 2.36 8.08 -2.39 -0.02 2.34 16 28 H 0.11 5.51 6.15 -2.91 -0.02 5.49 16 29 H 0.29 12.79 8.30 -92.71 -0.77 12.02 16 30 H 0.12 4.62 6.45 -2.91 -0.02 4.60 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.10 4.41 7.63 -2.91 -0.02 4.39 16 Total: -1.00 -55.60 306.27 5.99 -49.60 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 1.10 Total: 23.38 kcal Atomic # 6 Polarization: -48.23 SS G_CDS: 2.75 Total: -45.48 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.24 Total: -39.87 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.05 Total: -19.94 kcal Atomic # 14 Polarization: 35.35 SS G_CDS: 2.03 Total: 37.38 kcal Atomic # 17 Polarization: -4.99 SS G_CDS: -0.08 Total: -5.07 kcal Total: -55.60 5.99 -49.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396054212.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.036 kcal (2) G-P(sol) polarization free energy of solvation -55.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds