Wall clock time and date at job start Mon Mar 30 2020 07:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 109.46729 * 2 1 4 4 C 1.38655 * 119.75193 * 264.99769 * 3 2 1 5 5 C 1.37601 * 120.24705 * 179.72594 * 4 3 2 6 6 C 1.40730 * 119.74820 * 0.28233 * 5 4 3 7 7 C 1.41389 * 120.24636 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00292 * 24.37990 * 7 6 5 9 9 C 1.39944 * 119.99951 * 204.38378 * 7 6 5 10 10 N 1.30823 * 120.00141 * 17.87262 * 9 7 6 11 11 Si 1.86802 * 119.99977 * 197.86920 * 9 7 6 12 12 H 1.48500 * 109.47270 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47107 * 120.00045 * 11 9 7 14 14 H 1.48504 * 109.47328 * 239.99991 * 11 9 7 15 15 C 1.40703 * 119.51107 * 359.97438 * 6 5 4 16 16 C 1.37643 * 119.74500 * 0.02562 * 15 6 5 17 17 C 1.50695 * 119.87597 * 180.02562 * 16 15 6 18 18 C 1.50700 * 109.46969 * 265.00025 * 17 16 15 19 19 O 1.20764 * 120.00388 * 359.97438 * 18 17 16 20 20 C 1.50698 * 119.99974 * 180.02562 * 18 17 16 21 21 Cl 1.80306 * 109.47308 * 179.97438 * 20 18 17 22 22 H 1.09002 * 109.46822 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47176 * 299.99594 * 1 2 3 24 24 H 1.08997 * 109.47266 * 59.99914 * 1 2 3 25 25 H 1.08998 * 109.47176 * 240.00406 * 2 1 3 26 26 H 1.08997 * 109.47266 * 120.00086 * 2 1 3 27 27 H 1.07995 * 119.87330 * 0.02562 * 4 3 2 28 28 H 1.08006 * 120.12352 * 180.29854 * 5 4 3 29 29 H 0.97005 * 119.99797 * 180.02562 * 10 9 7 30 30 H 1.07997 * 120.12667 * 180.02562 * 15 6 5 31 31 H 1.08996 * 109.47212 * 25.00088 * 17 16 15 32 32 H 1.08994 * 109.47144 * 145.00334 * 17 16 15 33 33 H 1.08997 * 109.47343 * 300.00083 * 20 18 17 34 34 H 1.09005 * 109.47394 * 59.99776 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3606 2.0346 -1.1992 5 6 2.8148 3.3334 -1.2115 6 6 2.9512 4.0370 -0.0004 7 6 3.4175 5.3718 -0.0008 8 1 3.3006 5.9844 -0.8825 9 6 4.0305 5.8992 1.1413 10 7 4.4886 5.0967 2.0675 11 14 4.1949 7.7489 1.3435 12 1 3.6019 8.4303 0.1648 13 1 3.4826 8.1777 2.5739 14 1 5.6314 8.1094 1.4521 15 6 2.6203 3.4023 1.2109 16 6 2.1678 2.1024 1.1995 17 6 1.8120 1.4200 2.4951 18 6 2.9947 0.6254 2.9856 19 8 4.0207 0.6140 2.3487 20 6 2.8969 -0.1560 4.2705 21 17 4.4620 -0.9944 4.5848 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.2548 1.4928 -2.1274 28 1 3.0653 3.8112 -2.1472 29 1 4.9132 5.4624 2.8593 30 1 2.7208 3.9331 2.1461 31 1 1.5443 2.1701 3.2392 32 1 0.9668 0.7510 2.3331 33 1 2.6770 0.5240 5.0935 34 1 2.0998 -0.8947 4.1868 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396057144.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:28 Heat of formation + Delta-G solvation = -45.994600 kcal Electronic energy + Delta-G solvation = -17881.249060 eV Core-core repulsion = 14997.019791 eV Total energy + Delta-G solvation = -2884.229269 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -39.35877 -37.60698 -35.80474 -34.41508 -32.43204 -31.79517 -29.57898 -28.81568 -26.14571 -25.29445 -22.33362 -20.82081 -19.79531 -18.93281 -17.12149 -15.79374 -15.63483 -15.29159 -14.82250 -14.42241 -14.34374 -13.58912 -13.08192 -12.92222 -12.72710 -12.65282 -12.29567 -11.86740 -11.76288 -11.37105 -11.30145 -11.08915 -10.83750 -10.73956 -10.56592 -10.42459 -10.30721 -10.20939 -9.54534 -9.45833 -9.23601 -9.03372 -7.32766 -7.23506 -6.71624 -4.30346 2.15822 2.34186 2.75166 2.99346 3.08483 3.13595 3.21088 3.95266 4.18139 4.63271 4.96103 5.09335 5.42397 5.56421 5.60003 5.67954 5.71987 5.86612 6.09134 6.12988 6.29386 6.31514 6.45973 6.53684 6.72058 6.91471 7.10926 7.30402 7.40632 7.61422 7.87973 7.90276 8.07056 8.11626 8.32122 8.64420 8.92597 8.99748 10.22098 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015943 B = 0.006822 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.855369 B = 4103.622258 C = 5446.319471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.062 4.062 3 C -0.192 4.192 4 C -0.089 4.089 5 C -0.221 4.221 6 C 0.108 3.892 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.076 3.924 10 N -0.791 5.791 11 Si 0.904 3.096 12 H -0.261 1.261 13 H -0.273 1.273 14 H -0.275 1.275 15 C -0.147 4.147 16 C -0.062 4.062 17 C -0.116 4.116 18 C 0.337 3.663 19 O -0.399 6.399 20 C -0.090 4.090 21 Cl -0.159 7.159 22 H 0.041 0.959 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.278 0.722 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.417 -7.367 5.292 11.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 C -0.193 4.193 4 C -0.107 4.107 5 C -0.240 4.240 6 C 0.106 3.894 7 C -0.494 4.494 8 H 0.095 0.905 9 C -0.142 4.142 10 N -0.416 5.416 11 Si 0.729 3.271 12 H -0.184 1.184 13 H -0.198 1.198 14 H -0.201 1.201 15 C -0.166 4.166 16 C -0.062 4.062 17 C -0.153 4.153 18 C 0.207 3.793 19 O -0.267 6.267 20 C -0.154 4.154 21 Cl -0.132 7.132 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.134 0.866 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.138 0.862 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.585 -7.432 5.185 10.645 hybrid contribution 0.198 0.816 0.320 0.899 sum -5.388 -6.616 5.505 10.154 Atomic orbital electron populations 1.21807 0.96680 0.99796 1.01826 1.20182 0.94408 0.95010 1.00343 1.18820 1.12287 0.95296 0.92903 1.20339 0.99985 0.95064 0.95336 1.20968 1.10876 0.94842 0.97347 1.17552 0.88421 0.92621 0.90828 1.19577 1.33852 0.97044 0.98891 0.90531 1.25891 0.93093 1.00048 0.95124 1.69863 1.26971 1.36667 1.08142 0.86329 0.78586 0.82915 0.79289 1.18441 1.19777 1.20059 1.21125 1.02805 0.93697 0.98978 1.18718 1.01765 0.94711 0.91009 1.20989 0.96712 0.99491 0.98144 1.24598 0.90048 0.79658 0.85021 1.90518 1.30096 1.52291 1.53821 1.25042 0.89005 0.99918 1.01408 1.98727 1.37418 1.80825 1.96263 0.94015 0.93018 0.92896 0.92986 0.93510 0.89563 0.89147 0.91068 0.86552 0.88691 0.88660 0.86164 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.72 37.16 0.36 -1.70 16 2 C -0.06 -1.07 5.37 -27.88 -0.15 -1.22 16 3 C -0.19 -4.11 5.16 -104.33 -0.54 -4.65 16 4 C -0.09 -2.02 9.65 -39.66 -0.38 -2.40 16 5 C -0.22 -5.51 9.80 -38.87 -0.38 -5.89 16 6 C 0.11 2.89 5.58 -106.83 -0.60 2.30 16 7 C -0.46 -12.41 9.05 -37.75 -0.34 -12.76 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 9 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 10 N -0.79 -20.72 10.95 55.55 0.61 -20.11 16 11 Si 0.90 18.79 29.59 -169.99 -5.03 13.76 16 12 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 13 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 14 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 15 C -0.15 -3.72 8.32 -38.87 -0.32 -4.04 16 16 C -0.06 -1.35 4.37 -104.70 -0.46 -1.81 16 17 C -0.12 -1.91 5.09 -29.04 -0.15 -2.06 16 18 C 0.34 5.64 6.40 -29.04 -0.19 5.46 16 19 O -0.40 -8.73 15.69 6.00 0.09 -8.64 16 20 C -0.09 -1.07 7.07 36.00 0.25 -0.82 16 21 Cl -0.16 -2.31 28.37 -51.86 -1.47 -3.78 16 22 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.71 6.82 -51.93 -0.35 0.36 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.88 8.05 -51.93 -0.42 0.46 16 26 H 0.05 0.78 6.38 -51.93 -0.33 0.45 16 27 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 28 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 29 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 30 H 0.12 3.03 6.16 -52.49 -0.32 2.71 16 31 H 0.09 1.41 8.05 -51.93 -0.42 0.99 16 32 H 0.10 1.30 5.59 -51.93 -0.29 1.01 16 33 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 302.56 15.07 4.56 4.56 Total: -1.00 -30.27 302.56 -8.44 -38.70 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -4.22 Total: 3.26 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: -2.98 Total: -27.76 kcal Atomic # 7 Polarization: -20.72 SS G_CDS: 0.61 Total: -20.11 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -1.47 Total: -3.78 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.27 -8.44 -38.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396057144.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.290 kcal (2) G-P(sol) polarization free energy of solvation -30.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds