Wall clock time and date at job start Mon Mar 30 2020 07:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 109.46729 * 2 1 4 4 C 1.38655 * 119.75193 * 264.99769 * 3 2 1 5 5 C 1.37601 * 120.24705 * 179.72594 * 4 3 2 6 6 C 1.40730 * 119.74820 * 0.28233 * 5 4 3 7 7 C 1.41389 * 120.24636 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00292 * 24.37990 * 7 6 5 9 9 C 1.39944 * 119.99951 * 204.38378 * 7 6 5 10 10 N 1.30823 * 120.00141 * 17.87262 * 9 7 6 11 11 Si 1.86802 * 119.99977 * 197.86920 * 9 7 6 12 12 H 1.48500 * 109.47270 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47107 * 120.00045 * 11 9 7 14 14 H 1.48504 * 109.47328 * 239.99991 * 11 9 7 15 15 C 1.40703 * 119.51107 * 359.97438 * 6 5 4 16 16 C 1.37643 * 119.74500 * 0.02562 * 15 6 5 17 17 C 1.50695 * 119.87597 * 180.02562 * 16 15 6 18 18 C 1.50700 * 109.46969 * 265.00025 * 17 16 15 19 19 O 1.20764 * 120.00388 * 359.97438 * 18 17 16 20 20 C 1.50698 * 119.99974 * 180.02562 * 18 17 16 21 21 Cl 1.80306 * 109.47308 * 179.97438 * 20 18 17 22 22 H 1.09002 * 109.46822 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47176 * 299.99594 * 1 2 3 24 24 H 1.08997 * 109.47266 * 59.99914 * 1 2 3 25 25 H 1.08998 * 109.47176 * 240.00406 * 2 1 3 26 26 H 1.08997 * 109.47266 * 120.00086 * 2 1 3 27 27 H 1.07995 * 119.87330 * 0.02562 * 4 3 2 28 28 H 1.08006 * 120.12352 * 180.29854 * 5 4 3 29 29 H 0.97005 * 119.99797 * 180.02562 * 10 9 7 30 30 H 1.07997 * 120.12667 * 180.02562 * 15 6 5 31 31 H 1.08996 * 109.47212 * 25.00088 * 17 16 15 32 32 H 1.08994 * 109.47144 * 145.00334 * 17 16 15 33 33 H 1.08997 * 109.47343 * 300.00083 * 20 18 17 34 34 H 1.09005 * 109.47394 * 59.99776 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3606 2.0346 -1.1992 5 6 2.8148 3.3334 -1.2115 6 6 2.9512 4.0370 -0.0004 7 6 3.4175 5.3718 -0.0008 8 1 3.3006 5.9844 -0.8825 9 6 4.0305 5.8992 1.1413 10 7 4.4886 5.0967 2.0675 11 14 4.1949 7.7489 1.3435 12 1 3.6019 8.4303 0.1648 13 1 3.4826 8.1777 2.5739 14 1 5.6314 8.1094 1.4521 15 6 2.6203 3.4023 1.2109 16 6 2.1678 2.1024 1.1995 17 6 1.8120 1.4200 2.4951 18 6 2.9947 0.6254 2.9856 19 8 4.0207 0.6140 2.3487 20 6 2.8969 -0.1560 4.2705 21 17 4.4620 -0.9944 4.5848 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.2548 1.4928 -2.1274 28 1 3.0653 3.8112 -2.1472 29 1 4.9132 5.4624 2.8593 30 1 2.7208 3.9331 2.1461 31 1 1.5443 2.1701 3.2392 32 1 0.9668 0.7510 2.3331 33 1 2.6770 0.5240 5.0935 34 1 2.0998 -0.8947 4.1868 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396057144.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:26 Heat of formation + Delta-G solvation = -62.156023 kcal Electronic energy + Delta-G solvation = -17881.949872 eV Core-core repulsion = 14997.019791 eV Total energy + Delta-G solvation = -2884.930081 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.84263 -39.27977 -36.86492 -36.16935 -34.13464 -33.28614 -30.87627 -30.55734 -27.63415 -27.00640 -23.89400 -22.53013 -21.34781 -20.45592 -18.98381 -17.19891 -17.06462 -16.81310 -16.28258 -16.03107 -15.74241 -15.21962 -14.45221 -14.31424 -14.18033 -13.99506 -13.77484 -13.49512 -13.45820 -12.87924 -12.81754 -12.71084 -12.49422 -12.15819 -11.90089 -11.87125 -11.75827 -11.43895 -11.28871 -11.13608 -10.98927 -10.55732 -9.15321 -9.09493 -8.59247 -6.28948 0.93710 1.06467 1.10563 1.27208 1.36279 1.49487 1.52203 2.21123 2.68047 3.04253 3.75181 3.98044 4.14552 4.25903 4.30788 4.37465 4.41592 4.57093 4.65164 4.74135 4.76273 4.97118 5.06779 5.09647 5.19580 5.22892 5.44489 5.52623 5.58242 5.76076 6.05095 6.14950 6.29054 6.45050 6.63234 6.74219 6.98265 7.09213 8.36230 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015943 B = 0.006822 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.855369 B = 4103.622258 C = 5446.319471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.061 4.061 3 C -0.187 4.187 4 C -0.101 4.101 5 C -0.246 4.246 6 C 0.070 3.930 7 C -0.506 4.506 8 H 0.068 0.932 9 C 0.036 3.964 10 N -0.826 5.826 11 Si 0.979 3.021 12 H -0.260 1.260 13 H -0.259 1.259 14 H -0.269 1.269 15 C -0.171 4.171 16 C -0.063 4.063 17 C -0.119 4.119 18 C 0.341 3.659 19 O -0.463 6.463 20 C -0.080 4.080 21 Cl -0.183 7.183 22 H 0.073 0.927 23 H 0.059 0.941 24 H 0.044 0.956 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.285 0.715 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.135 0.865 33 H 0.153 0.847 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.276 -8.850 6.810 13.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.099 4.099 3 C -0.188 4.188 4 C -0.119 4.119 5 C -0.266 4.266 6 C 0.068 3.932 7 C -0.536 4.536 8 H 0.086 0.914 9 C -0.178 4.178 10 N -0.453 5.453 11 Si 0.800 3.200 12 H -0.184 1.184 13 H -0.184 1.184 14 H -0.195 1.195 15 C -0.190 4.190 16 C -0.064 4.064 17 C -0.156 4.156 18 C 0.215 3.785 19 O -0.335 6.335 20 C -0.142 4.142 21 Cl -0.157 7.157 22 H 0.092 0.908 23 H 0.078 0.922 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.127 0.873 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.119 0.881 31 H 0.132 0.868 32 H 0.153 0.847 33 H 0.171 0.829 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -7.473 -8.933 6.709 13.441 hybrid contribution 0.690 1.129 -0.209 1.340 sum -6.783 -7.804 6.500 12.213 Atomic orbital electron populations 1.21746 0.93884 1.01964 1.01914 1.20248 0.96667 0.91793 1.01143 1.19439 1.09850 0.97352 0.92157 1.20706 0.99567 0.94411 0.97241 1.21139 1.12306 0.96198 0.96927 1.17956 0.89626 0.93424 0.92163 1.19779 1.36144 0.97797 0.99832 0.91374 1.26698 0.92055 1.04811 0.94252 1.69927 1.27797 1.38705 1.08823 0.85217 0.78719 0.76615 0.79463 1.18396 1.18382 1.19450 1.21141 1.04614 0.95470 0.97808 1.19220 0.99565 0.93644 0.93941 1.21131 0.98117 1.00486 0.95825 1.25112 0.88651 0.78713 0.86017 1.90526 1.32085 1.54717 1.56199 1.25196 0.88668 1.01016 0.99326 1.98735 1.39546 1.81194 1.96185 0.90800 0.92183 0.93684 0.92624 0.92386 0.87258 0.89449 0.90464 0.88078 0.86821 0.84741 0.82893 0.81711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.72 71.98 0.70 -2.67 16 2 C -0.06 -1.92 5.37 29.85 0.16 -1.76 16 3 C -0.19 -7.82 5.16 -19.67 -0.10 -7.92 16 4 C -0.10 -4.64 9.65 22.22 0.21 -4.42 16 5 C -0.25 -12.88 9.80 22.73 0.22 -12.65 16 6 C 0.07 3.97 5.58 -21.29 -0.12 3.85 16 7 C -0.51 -28.62 9.05 23.46 0.21 -28.41 16 8 H 0.07 3.78 7.91 -2.91 -0.02 3.75 16 9 C 0.04 1.88 5.14 85.26 0.44 2.32 16 10 N -0.83 -44.89 10.95 21.83 0.24 -44.65 16 11 Si 0.98 39.61 29.59 68.60 2.03 41.64 16 12 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 13 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 14 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 15 C -0.17 -8.95 8.32 22.73 0.19 -8.76 16 16 C -0.06 -2.75 4.37 -19.91 -0.09 -2.83 16 17 C -0.12 -3.58 5.09 29.10 0.15 -3.44 16 18 C 0.34 10.58 6.40 29.10 0.19 10.77 16 19 O -0.46 -20.04 15.69 -1.46 -0.02 -20.06 16 20 C -0.08 -1.57 7.07 71.24 0.50 -1.06 16 21 Cl -0.18 -4.94 28.37 -2.72 -0.08 -5.01 16 22 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.06 1.37 6.82 -2.39 -0.02 1.35 16 24 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.06 1.72 8.05 -2.39 -0.02 1.70 16 26 H 0.06 1.71 6.38 -2.39 -0.02 1.69 16 27 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 28 H 0.09 4.42 8.06 -2.91 -0.02 4.39 16 29 H 0.28 14.00 8.30 -92.70 -0.77 13.23 16 30 H 0.10 5.50 6.16 -2.91 -0.02 5.48 16 31 H 0.11 3.05 8.05 -2.39 -0.02 3.03 16 32 H 0.13 2.99 5.59 -2.39 -0.01 2.98 16 33 H 0.15 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.17 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -71.34 302.56 5.94 -65.40 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 1.10 Total: 19.68 kcal Atomic # 6 Polarization: -59.66 SS G_CDS: 2.67 Total: -56.99 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.24 Total: -44.65 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.02 Total: -20.06 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Atomic # 17 Polarization: -4.94 SS G_CDS: -0.08 Total: -5.01 kcal Total: -71.34 5.94 -65.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396057144.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.240 kcal (2) G-P(sol) polarization free energy of solvation -71.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds