Wall clock time and date at job start Mon Mar 30 2020 07:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50705 * 109.46975 * 2 1 4 4 C 1.38653 * 119.87537 * 264.97698 * 3 2 1 5 5 C 1.38613 * 120.50469 * 180.02562 * 4 3 2 6 6 C 1.37643 * 120.24514 * 359.73534 * 5 4 3 7 7 C 1.40697 * 119.74373 * 0.52287 * 6 5 4 8 8 C 1.41391 * 120.24218 * 179.76443 * 7 6 5 9 9 H 1.08003 * 120.00051 * 149.80220 * 8 7 6 10 10 C 1.39944 * 120.00137 * 329.52471 * 8 7 6 11 11 N 1.30826 * 120.00325 * 162.13566 * 10 8 7 12 12 Si 1.86800 * 119.99824 * 342.13220 * 10 8 7 13 13 H 1.48498 * 109.47162 * 95.36181 * 12 10 8 14 14 H 1.48499 * 109.47100 * 215.36156 * 12 10 8 15 15 H 1.48498 * 109.47221 * 335.35870 * 12 10 8 16 16 C 1.37596 * 119.87690 * 85.00355 * 3 2 1 17 17 C 1.50701 * 120.12611 * 359.97438 * 16 3 2 18 18 C 1.50705 * 109.46762 * 269.97784 * 17 16 3 19 19 O 1.20749 * 120.00559 * 0.02562 * 18 17 16 20 20 C 1.50698 * 119.99665 * 179.97438 * 18 17 16 21 21 Cl 1.80296 * 109.47310 * 180.02562 * 20 18 17 22 22 H 1.09003 * 109.47223 * 300.00033 * 1 2 3 23 23 H 1.09003 * 109.47289 * 60.00086 * 1 2 3 24 24 H 1.09002 * 109.47338 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47371 * 240.00100 * 2 1 3 26 26 H 1.08998 * 109.47718 * 119.99775 * 2 1 3 27 27 H 1.08005 * 119.74810 * 359.97438 * 4 3 2 28 28 H 1.08005 * 119.87663 * 180.02562 * 5 4 3 29 29 H 1.07994 * 120.12603 * 180.25486 * 6 5 4 30 30 H 0.96996 * 120.00154 * 179.97438 * 11 10 8 31 31 H 1.08997 * 109.47020 * 29.98292 * 17 16 3 32 32 H 1.08999 * 109.46738 * 149.98243 * 17 16 3 33 33 H 1.09006 * 109.47641 * 300.00777 * 20 18 17 34 34 H 1.09005 * 109.47433 * 60.00213 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3617 2.0369 -1.1977 5 6 2.8254 3.3431 -1.2128 6 6 2.9587 4.0452 -0.0364 7 6 2.6326 3.4283 1.1854 8 6 2.7702 4.1380 2.4005 9 1 2.1175 3.9168 3.2320 10 6 3.7560 5.1232 2.5277 11 7 3.6750 6.0098 3.4863 12 14 5.1877 5.1720 1.3288 13 1 4.8846 6.1292 0.2346 14 1 6.4155 5.6076 2.0415 15 1 5.4012 3.8182 0.7572 16 6 2.1627 2.1017 1.1886 17 6 1.8039 1.4295 2.4887 18 6 0.3501 1.6782 2.7982 19 8 -0.3250 2.3332 2.0411 20 6 -0.2614 1.1084 4.0522 21 17 -2.0007 1.5754 4.1385 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8899 27 1 2.2570 1.4947 -2.1258 28 1 3.0787 3.8133 -2.1516 29 1 3.3163 5.0641 -0.0508 30 1 4.3585 6.6924 3.5746 31 1 1.9791 0.3570 2.4036 32 1 2.4207 1.8359 3.2902 33 1 -0.1777 0.0216 4.0360 34 1 0.2640 1.5002 4.9232 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396057518.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:33 Heat of formation + Delta-G solvation = -58.322628 kcal Electronic energy + Delta-G solvation = -18297.148958 eV Core-core repulsion = 15412.385106 eV Total energy + Delta-G solvation = -2884.763852 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.95897 -39.33444 -36.84696 -35.94852 -34.61599 -33.42556 -31.29717 -30.36300 -28.00928 -26.53008 -24.56199 -22.13164 -21.78766 -20.28048 -18.86756 -17.53910 -17.17081 -16.96999 -16.45402 -15.90586 -15.70070 -15.31302 -14.81798 -14.33944 -14.18196 -14.07854 -13.94516 -13.70847 -13.33879 -13.21824 -12.89175 -12.67506 -12.59077 -12.16110 -11.85915 -11.80386 -11.63327 -11.46113 -11.40499 -11.21257 -10.90060 -10.54064 -9.31554 -9.13217 -8.85958 -6.44050 0.79600 0.88975 1.12571 1.22717 1.27258 1.40239 1.48424 2.13476 2.62231 3.03963 3.58093 4.03219 4.14569 4.16912 4.29926 4.32600 4.47211 4.48819 4.59090 4.66452 4.78388 4.82512 4.95857 5.04187 5.11123 5.13568 5.24539 5.44484 5.49416 5.74397 5.91895 5.97718 6.10648 6.30904 6.47691 6.69369 6.81009 6.93827 8.21307 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.008220 C = 0.006054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.970980 B = 3405.533162 C = 4623.826601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 C -0.045 4.045 4 C -0.230 4.230 5 C -0.091 4.091 6 C -0.263 4.263 7 C 0.082 3.918 8 C -0.471 4.471 9 H 0.064 0.936 10 C 0.051 3.949 11 N -0.851 5.851 12 Si 0.960 3.040 13 H -0.273 1.273 14 H -0.279 1.279 15 H -0.252 1.252 16 C -0.171 4.171 17 C -0.108 4.108 18 C 0.345 3.655 19 O -0.458 6.458 20 C -0.084 4.084 21 Cl -0.181 7.181 22 H 0.046 0.954 23 H 0.038 0.962 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.290 0.710 31 H 0.131 0.869 32 H 0.103 0.897 33 H 0.165 0.835 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.992 -13.204 -0.384 13.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.045 4.045 4 C -0.249 4.249 5 C -0.109 4.109 6 C -0.282 4.282 7 C 0.079 3.921 8 C -0.501 4.501 9 H 0.082 0.918 10 C -0.164 4.164 11 N -0.477 5.477 12 Si 0.785 3.215 13 H -0.199 1.199 14 H -0.206 1.206 15 H -0.175 1.175 16 C -0.172 4.172 17 C -0.144 4.144 18 C 0.219 3.781 19 O -0.331 6.331 20 C -0.146 4.146 21 Cl -0.155 7.155 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.105 0.895 27 H 0.139 0.861 28 H 0.134 0.866 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.148 0.852 32 H 0.121 0.879 33 H 0.182 0.818 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.428 -12.601 -0.587 12.847 hybrid contribution 0.522 1.089 -0.208 1.226 sum -1.906 -11.512 -0.794 11.696 Atomic orbital electron populations 1.21791 0.94977 1.01865 1.01671 1.20593 0.95838 0.91741 1.03439 1.19755 0.95962 0.96517 0.92299 1.20734 1.10817 0.95883 0.97437 1.20926 0.98094 0.95208 0.96708 1.21113 1.13876 0.99295 0.93897 1.17749 0.90262 0.91771 0.92274 1.19335 1.15899 1.15858 0.99007 0.91784 1.26697 1.01050 0.92142 0.96474 1.69732 1.34068 1.12100 1.31838 0.85567 0.77378 0.80435 0.78163 1.19936 1.20552 1.17535 1.19420 1.10101 0.93572 0.94150 1.20864 0.93399 1.03058 0.97111 1.25078 0.90874 0.76600 0.85513 1.90448 1.63875 1.30246 1.48517 1.25215 0.82064 1.06563 1.00782 1.98724 1.23478 1.94447 1.98802 0.93548 0.94315 0.90414 0.90283 0.89533 0.86089 0.86638 0.89533 0.89934 0.85151 0.87911 0.81758 0.83951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 9.89 71.98 0.71 -3.28 16 2 C -0.08 -2.18 5.55 29.85 0.17 -2.02 16 3 C -0.05 -1.72 5.13 -19.92 -0.10 -1.82 16 4 C -0.23 -9.01 9.68 22.46 0.22 -8.79 16 5 C -0.09 -3.93 10.02 22.22 0.22 -3.70 16 6 C -0.26 -12.94 7.17 22.73 0.16 -12.78 16 7 C 0.08 4.11 5.09 -21.29 -0.11 4.00 16 8 C -0.47 -25.46 8.54 23.46 0.20 -25.26 16 9 H 0.06 3.63 7.19 -2.91 -0.02 3.61 16 10 C 0.05 2.69 5.41 85.26 0.46 3.15 16 11 N -0.85 -46.44 13.93 21.83 0.30 -46.14 16 12 Si 0.96 43.51 24.53 68.60 1.68 45.19 16 13 H -0.27 -12.26 6.72 99.48 0.67 -11.59 16 14 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 15 H -0.25 -11.54 6.86 99.48 0.68 -10.86 16 16 C -0.17 -7.24 4.43 -19.41 -0.09 -7.33 16 17 C -0.11 -3.54 4.75 29.10 0.14 -3.40 16 18 C 0.34 11.32 5.66 29.10 0.16 11.49 16 19 O -0.46 -19.43 14.18 -1.42 -0.02 -19.45 16 20 C -0.08 -1.91 7.07 71.24 0.50 -1.41 16 21 Cl -0.18 -5.18 28.37 -2.72 -0.08 -5.25 16 22 H 0.05 1.43 4.59 -2.39 -0.01 1.42 16 23 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.08 1.91 8.05 -2.39 -0.02 1.89 16 26 H 0.09 1.98 6.15 -2.39 -0.01 1.97 16 27 H 0.12 4.00 8.06 -2.91 -0.02 3.98 16 28 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 29 H 0.09 4.36 4.79 -2.91 -0.01 4.35 16 30 H 0.29 14.40 8.30 -92.71 -0.77 13.63 16 31 H 0.13 3.10 6.01 -2.39 -0.01 3.08 16 32 H 0.10 3.53 6.86 -2.39 -0.02 3.52 16 33 H 0.16 2.24 8.14 -2.38 -0.02 2.22 16 34 H 0.14 2.73 8.14 -2.38 -0.02 2.72 16 Total: -1.00 -66.58 290.71 5.60 -60.98 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 1.05 Total: 15.82 kcal Atomic # 6 Polarization: -53.81 SS G_CDS: 2.65 Total: -51.15 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.30 Total: -46.14 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.02 Total: -19.45 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.68 Total: 45.19 kcal Atomic # 17 Polarization: -5.18 SS G_CDS: -0.08 Total: -5.25 kcal Total: -66.58 5.60 -60.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396057518.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.659 kcal (2) G-P(sol) polarization free energy of solvation -66.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds